Mycolicibacterium farcinogenes strain BKK/CU-MFGFA-001 plasmid unnamed3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Complete Genome Sequences of Mycobacterium farcinogenes Isolated from Clinical Specimens from Patients in Thailand
Submitted (30-JUL-2021) Microbiology, Chulalongkorn University, RamaIV, Bangkok 10330, Thailand
REFSEQ INFORMATION: The reference sequence is identical to\nCP081676.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2020\nAssembly Method :: Flye v. 2.8.3\nAssembly Name :: CU_Mfar_001\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 77x\nSequencing Technology :: Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 05:02:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,342\nCDSs (total) :: 6,283\nGenes (coding) :: 6,214\nCDSs (with protein) :: 6,214\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 28 of 69\nPseudo Genes (incomplete) :: 40 of 69\nPseudo Genes (internal stop) :: 7 of 69\nPseudo Genes (multiple problems) :: 5 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005149396.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014805429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805892.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011896304.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296247.1
COORDINATES: similar to AA sequence:RefSeq:WP_017555459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264008.1
COORDINATES: similar to AA sequence:RefSeq:WP_007170759.1
COORDINATES: similar to AA sequence:RefSeq:WP_005149407.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005147288.1