Mycolicibacterium farcinogenes strain BKK/CU-MFGFA-001 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Complete Genome Sequences of Mycobacterium farcinogenes Isolated from Clinical Specimens from Patients in Thailand
Submitted (30-JUL-2021) Microbiology, Chulalongkorn University, RamaIV, Bangkok 10330, Thailand
REFSEQ INFORMATION: The reference sequence is identical to\nCP081675.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2020\nAssembly Method :: Flye v. 2.8.3\nAssembly Name :: CU_Mfar_001\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 77x\nSequencing Technology :: Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 05:02:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,342\nCDSs (total) :: 6,283\nGenes (coding) :: 6,214\nCDSs (with protein) :: 6,214\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 28 of 69\nPseudo Genes (incomplete) :: 40 of 69\nPseudo Genes (internal stop) :: 7 of 69\nPseudo Genes (multiple problems) :: 5 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF018381.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005067380.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005114908.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014805376.1
COORDINATES: similar to AA sequence:RefSeq:WP_014942736.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148583.1
COORDINATES: similar to AA sequence:RefSeq:WP_005144166.1
COORDINATES: similar to AA sequence:RefSeq:WP_013470229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243427.1
COORDINATES: protein motif:HMM:NF027788.2
COORDINATES: similar to AA sequence:RefSeq:WP_006243434.1
COORDINATES: similar to AA sequence:RefSeq:WP_006898598.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006247570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172412.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011724501.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005148545.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005148546.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_014805894.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006244103.1
COORDINATES: protein motif:HMM:NF022231.2
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF016964.2
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03924.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558251.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013021.2
COORDINATES: protein motif:HMM:NF025377.2
COORDINATES: protein motif:HMM:TIGR03920.1
type VII secretion integral membrane protein EccD
COORDINATES: similar to AA sequence:RefSeq:WP_006246383.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03923.1
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: protein motif:HMM:NF023742.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014058534.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF025407.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172545.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172546.1