Mycolicibacterium farcinogenes strain BKK/CU-MFGFA-001 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Complete Genome Sequences of Mycobacterium farcinogenes Isolated from Clinical Specimens from Patients in Thailand
Submitted (30-JUL-2021) Microbiology, Chulalongkorn University, RamaIV, Bangkok 10330, Thailand
REFSEQ INFORMATION: The reference sequence is identical to\nCP081674.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2020\nAssembly Method :: Flye v. 2.8.3\nAssembly Name :: CU_Mfar_001\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 77x\nSequencing Technology :: Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 05:02:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,342\nCDSs (total) :: 6,283\nGenes (coding) :: 6,214\nCDSs (with protein) :: 6,214\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 28 of 69\nPseudo Genes (incomplete) :: 40 of 69\nPseudo Genes (internal stop) :: 7 of 69\nPseudo Genes (multiple problems) :: 5 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011600428.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011600104.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_016888813.1
COORDINATES: similar to AA sequence:RefSeq:WP_016888812.1
COORDINATES: similar to AA sequence:RefSeq:WP_007237519.1
COORDINATES: protein motif:HMM:NF015400.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF024109.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: similar to AA sequence:RefSeq:WP_005137185.1
COORDINATES: similar to AA sequence:RefSeq:WP_014353349.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011767932.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005438226.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003878491.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014151569.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611663.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007172172.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014805481.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805866.1
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011905269.1
translation initiation factor IF-2 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005276242.1
GO:0009975 - cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO:0032555 - purine ribonucleotide binding [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:TIGR03923.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014805871.1
GO:0003674 - molecular_function [Evidence IEA]
type VII secretion integral membrane protein EccD
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_014805495.1
COORDINATES: protein motif:HMM:NF013021.2
COORDINATES: similar to AA sequence:RefSeq:WP_014805877.1
COORDINATES: protein motif:HMM:NF012576.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012552894.1
COORDINATES: similar to AA sequence:RefSeq:WP_005147680.1
COORDINATES: protein motif:HMM:NF014616.2
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_014805888.1
COORDINATES: protein motif:HMM:NF022280.2
COORDINATES: protein motif:HMM:NF022231.2
COORDINATES: similar to AA sequence:RefSeq:WP_018680778.1
COORDINATES: protein motif:HMM:NF020265.2
COORDINATES: similar to AA sequence:RefSeq:WP_007172374.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246606.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386131.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF020305.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006246364.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_017206310.1
COORDINATES: similar to AA sequence:RefSeq:WP_005100489.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014805913.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805529.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017589429.1
COORDINATES: similar to AA sequence:RefSeq:WP_008256167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014711467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011782997.1
COORDINATES: protein motif:HMM:NF017897.2
COORDINATES: similar to AA sequence:RefSeq:WP_005106763.1
COORDINATES: similar to AA sequence:RefSeq:WP_005100828.1
COORDINATES: similar to AA sequence:RefSeq:WP_005101385.1
COORDINATES: similar to AA sequence:RefSeq:WP_016895227.1
COORDINATES: similar to AA sequence:RefSeq:WP_016895228.1
COORDINATES: similar to AA sequence:RefSeq:WP_005103111.1
COORDINATES: protein motif:HMM:NF033942.0
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005056379.1
COORDINATES: similar to AA sequence:RefSeq:WP_014213086.1
COORDINATES: similar to AA sequence:RefSeq:WP_007323353.1
COORDINATES: similar to AA sequence:RefSeq:WP_005112863.1
COORDINATES: similar to AA sequence:RefSeq:WP_003882776.1
COORDINATES: similar to AA sequence:RefSeq:WP_013226072.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: similar to AA sequence:RefSeq:WP_014349767.1
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612120.1
COORDINATES: similar to AA sequence:RefSeq:WP_010455367.1
COORDINATES: similar to AA sequence:RefSeq:WP_003924068.1
COORDINATES: similar to AA sequence:RefSeq:WP_003885929.1
COORDINATES: protein motif:HMM:NF012965.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_005148595.1
COORDINATES: similar to AA sequence:RefSeq:WP_019548606.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003881237.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172305.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_014805470.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013798144.1