Halococcus dombrowskii strain H4 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
Sequencing and genomic assembly of Halococcus dombrowskii
Submitted (04-APR-2022) Research, Binomica Labs, 4301 22nd St 3FL Studio 342, Long Island City, NY 11101, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP095009.1.\nBacteria and source DNA available from MacLea Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-JAN-2022\nAssembly Method :: Trycycler v. v0.5.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 1529.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 06:11:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,056\nCDSs (total) :: 3,990\nGenes (coding) :: 3,871\nCDSs (with protein) :: 3,871\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 2\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 46 of 119\nPseudo Genes (incomplete) :: 91 of 119\nPseudo Genes (internal stop) :: 21 of 119\nPseudo Genes (multiple problems) :: 33 of 119\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007741505.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008426096.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183375.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066072.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007690604.1
6-pyruvoyl tetrahydropterin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007690603.1
COORDINATES: protein motif:HMM:NF018242.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611805.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005040972.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737325.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737232.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007741705.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018259127.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737238.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737241.1
GO:0016829 - lyase activity [Evidence IEA]
CbiX/SirB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015762813.1
cobalt-precorrin-7 (C(5))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007737245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737249.1
GO:0051116 - cobaltochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008383969.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008574626.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737264.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007743431.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737266.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594120.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077743.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737271.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018259140.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737274.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018259142.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737284.1
cobalt-factor II C(20)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007737285.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT
COORDINATES: similar to AA sequence:RefSeq:WP_007737287.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007737289.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257288.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042763.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042761.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042760.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005042759.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006075811.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689600.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014766.2
COORDINATES: similar to AA sequence:RefSeq:WP_005043721.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611936.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004051867.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737788.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258865.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004052676.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076846.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006826328.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004055388.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_020222083.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592455.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005040612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109542.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051524.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741446.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004053039.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008414108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430864.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054244.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078526.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040665.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424821.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040673.1
COORDINATES: similar to AA sequence:RefSeq:WP_008091676.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415328.1
GO:0016853 - isomerase activity [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_005040675.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007737582.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004054140.1
GO:0009267 - cellular response to starvation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020650.2
COORDINATES: similar to AA sequence:RefSeq:WP_010903955.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: similar to AA sequence:RefSeq:WP_011322414.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008415507.1
TrkA C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006673261.1
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: protein motif:HMM:NF027245.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF024966.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008415513.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005041122.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611232.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415516.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008310449.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199655.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430345.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557942.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007691076.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024108.2
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007740908.1
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: similar to AA sequence:RefSeq:WP_007737554.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051321.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051322.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660313.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738646.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180949.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043629.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004051329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051330.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008444995.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051332.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004052511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738360.1
non-histone chromosomal MC1 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004052730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051338.1
COORDINATES: similar to AA sequence:RefSeq:WP_008576747.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737110.1
Replication protein A protects and stabilize the intermediate ssDNA that is generated by the unwinding action of a DNA helicase at the replication fork. In addition, SSBs prevent the formation of secondary structures by single-stranded template DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004051335.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738362.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051333.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005043489.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736519.1
COORDINATES: similar to AA sequence:RefSeq:WP_005045332.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004967099.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738052.1
COORDINATES: similar to AA sequence:RefSeq:WP_004052550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422292.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004055783.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050806.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005046984.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_007737336.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011572604.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078498.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737331.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006825236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004050983.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004050982.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020221128.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006111346.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:TIGR03174.1
GO:0003674 - molecular_function [Evidence IEA]
type I-D CRISPR-associated protein Cas10d/Csc3
COORDINATES: similar to AA sequence:RefSeq:WP_006111345.1
type I-D CRISPR-associated protein Cas7/Csc2
COORDINATES: similar to AA sequence:RefSeq:WP_007274331.1
type I-D CRISPR-associated protein Cas5/Csc1
COORDINATES: similar to AA sequence:RefSeq:WP_006111342.1
GO:0004386 - helicase activity [Evidence IEA]
type I-D CRISPR-associated helicase Cas3'
COORDINATES: similar to AA sequence:RefSeq:WP_006111341.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274333.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274334.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037531.2
COORDINATES: similar to AA sequence:RefSeq:WP_007738205.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007110228.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012942729.1
COORDINATES: similar to AA sequence:RefSeq:WP_015761623.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006882667.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741039.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007345926.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143391.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594708.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046440.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046592.1
TrmB family transcriptional regulator sugar-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008573285.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046587.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015763220.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015763221.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004055259.1
COORDINATES: similar to AA sequence:RefSeq:WP_004052679.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006647887.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054744.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737833.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005047121.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_005040768.1
COORDINATES: protein motif:HMM:NF014044.2
helix-hairpin-helix domain-containing protein
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005040622.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040616.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881011.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740313.1
COORDINATES: protein motif:HMM:NF012600.2
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007738090.1
FaeA/PapI family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007738096.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738092.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738097.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736414.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737321.1
COORDINATES: protein motif:HMM:NF020897.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005040548.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051834.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038857.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737546.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737563.1
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: similar to AA sequence:RefSeq:WP_004515932.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422294.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041051.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054211.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741134.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076776.1
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004598925.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: protein motif:HMM:NF036688.2
COORDINATES: similar to AA sequence:RefSeq:WP_007736962.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035025.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007737000.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556492.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738505.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736609.1
COORDINATES: similar to AA sequence:RefSeq:WP_008389241.1
COORDINATES: similar to AA sequence:RefSeq:WP_004053509.1
COORDINATES: similar to AA sequence:RefSeq:WP_004053507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051752.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367635.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736356.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004051436.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736366.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736368.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736369.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736995.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275282.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016581.2
COORDINATES: similar to AA sequence:RefSeq:WP_007737225.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007737224.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007695454.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012996429.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274461.1