Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence.
Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Oscillatoria.
Finished plasmid 1 of genome of Oscillatoria sp. PCC 7112
Submitted (31-MAY-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003615.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087498\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Oscillatoria sp. PCC 7112\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Missing\nnum_replicons :: 6\nref_biomaterial :: PCC 7112\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04314\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: soil in orchid house\nIsolation Comments :: isolated by A Neilson in 1970\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/12/2022 03:36:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,049\nCDSs (total) :: 6,964\nGenes (coding) :: 6,715\nCDSs (with protein) :: 6,715\nGenes (RNA) :: 85\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 249\nCDSs (without protein) :: 249\nPseudo Genes (ambiguous residues) :: 0 of 249\nPseudo Genes (frameshifted) :: 118 of 249\nPseudo Genes (incomplete) :: 150 of 249\nPseudo Genes (internal stop) :: 50 of 249\nPseudo Genes (multiple problems) :: 62 of 249\nCRISPR Arrays :: 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Oscillatoria nigro-viridis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008188155.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_015211815.1
COORDINATES: similar to AA sequence:RefSeq:WP_015177560.1
COORDINATES: similar to AA sequence:RefSeq:WP_015177564.1
COORDINATES: similar to AA sequence:RefSeq:WP_006101221.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168367.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006633827.1
arsenate reductase, glutathione/glutaredoxin type
COORDINATES: similar to AA sequence:RefSeq:WP_006633828.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015161072.1
GO:0016311 - dephosphorylation [Evidence IEA]
dual specificity protein phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006633829.1
COORDINATES: similar to AA sequence:RefSeq:WP_002752758.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015175075.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010476513.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015195742.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307611.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655374.1
COORDINATES: similar to AA sequence:RefSeq:WP_012305554.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007352785.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007352784.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488088.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019488087.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352782.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019488086.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352778.1
COORDINATES: protein motif:HMM:NF027613.2
COORDINATES: similar to AA sequence:RefSeq:WP_015186450.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186451.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011153874.1
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017299806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153872.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153889.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015183060.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015137985.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015137986.1
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
type I restriction-modification system subunit M/S
COORDINATES: similar to AA sequence:RefSeq:WP_006276853.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488082.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186146.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186147.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948741.1
bifunctional 3'-5' exonuclease/DNA polymerase
COORDINATES: similar to AA sequence:RefSeq:WP_007352766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352765.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612130.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_007354285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354283.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354282.1
COORDINATES: similar to AA sequence:RefSeq:WP_017744554.1
IS200/IS605 family accessory protein TnpB-related protein
COORDINATES: protein motif:HMM:NF013921.2
COORDINATES: similar to AA sequence:RefSeq:WP_019488134.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201537.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019488133.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211697.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179838.1
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_015211667.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179842.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179851.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179855.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179856.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179859.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179860.1
COORDINATES: protein motif:HMM:NF019493.2
COORDINATES: similar to AA sequence:RefSeq:WP_015179861.1
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020289.2
COORDINATES: similar to AA sequence:RefSeq:WP_007354615.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179795.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211663.1
COORDINATES: protein motif:HMM:NF019227.2
polymorphic toxin-type HINT domain-containing protein
COORDINATES: protein motif:HMM:NF025779.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025769.2
COORDINATES: similar to AA sequence:RefSeq:WP_017745595.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007354274.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007354273.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488131.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354269.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211712.1
element excision factor XisH family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007354267.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354266.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354264.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019488130.1
COORDINATES: similar to AA sequence:RefSeq:WP_008185522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179664.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355623.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355626.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217696.1
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599347.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF023605.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007355630.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488113.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488112.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355635.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355636.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355637.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488110.1
COORDINATES: similar to AA sequence:RefSeq:WP_004161320.1
COORDINATES: similar to AA sequence:RefSeq:WP_016949023.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211746.1
COORDINATES: similar to AA sequence:RefSeq:WP_016867902.1
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413242.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352815.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352814.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211752.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488097.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352812.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352811.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352810.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352808.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352807.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352806.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352800.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007352797.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488094.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488093.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999030.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150595.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150596.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015083207.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150602.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015150604.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006633103.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019497158.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993966.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010993965.1
COORDINATES: similar to AA sequence:RefSeq:WP_015176497.1
COORDINATES: similar to AA sequence:RefSeq:WP_016866868.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876663.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408342.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211786.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015162981.1
COORDINATES: similar to AA sequence:RefSeq:WP_015183678.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292274.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015175880.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_008703253.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017741022.1
COORDINATES: similar to AA sequence:RefSeq:WP_006634326.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015177545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015177547.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016877602.1
COORDINATES: similar to AA sequence:RefSeq:WP_015328600.1
COORDINATES: similar to AA sequence:RefSeq:WP_015204269.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015205215.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352874.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006633656.1
COORDINATES: similar to AA sequence:RefSeq:WP_017720504.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017292237.1
COORDINATES: similar to AA sequence:RefSeq:WP_015176933.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497111.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656196.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307563.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015211608.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741048.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117900.1