Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.05, complete sequence.
type: Entry
definition: Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.05, complete sequence.
sequence version: NC_019732.1
sequence date: 2022-10-12
sequence: sequence
division: CON
label: NC_019732.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02261335
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Oscillatoria nigro-viridis PCC 7112
organism: Oscillatoria nigro-viridis PCC 7112
taxonomy: Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Oscillatoria.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003619.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087498\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Oscillatoria sp. PCC 7112\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Missing\nnum_replicons :: 6\nref_biomaterial :: PCC 7112\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04314\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: soil in orchid house\nIsolation Comments :: isolated by A Neilson in 1970\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology ::…

sequence
subclass of: SO_0000155
sequence length: 7645
topology: circular
so has quality: SO_0000988
location: 1..7645
location: region:1-7645:1
RO_0002162: 179408

NC_019732
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02261335
type: BioSample
SIO_000068: biosample

1
title: Finished plasmid 5 of genome of Oscillatoria sp. PCC 7112
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Davenport, K.
author: Daligault, H.
author: Erkkila, T.
author: Gu, W.
author: Munk, A.C.C.
author: Teshima, H.
author: Xu, Y.
author: Chain, P.
author: Chen, A.
author: Krypides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Peters, L.
author: Pitluck, S.
author: Woyke, T.
author: Kerfeld, C.
journal: Unpublished

2
title: Direct Submission
author: Gugger, M.
author: Coursin, T.
author: Rippka, R.
author: Tandeau De Marsac, N.
author: Huntemann, M.
author: Wei, C.-L.
author: Han, J.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Davenport, K.
author: Daligault, H.
author: Erkkila, T.
author: Gu, W.
author: Munk, A.C.C.
author: Teshima, H.
author: Xu, Y.
author: Chain, P.
author: Chen, A.
author: Krypides, N.
author: Mavromatis, K.
author: Markowitz, V.
author: Szeto, E.
author: Ivanova, N.
author: Mikhailova, N.
author: Ovchinnikova, G.
author: Pagani, I.
author: Pati, A.
author: Goodwin, L.
author: Peters, L.
author: Pitluck, S.
author: Woyke, T.
author: Kerfeld, C.
journal: Submitted (31-MAY-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7645:1
position: 7645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7645:1:source
so part of: sequence
organism: Oscillatoria nigro-viridis PCC 7112
mol type: genomic DNA
strain: PCC 7112
isolation source: soil in orchid house
type material: type strain of Oscillatoria nigro-viridis
plasmid: pOSC7112.05
country: USA
collection date: 1970
collected by: A. Neilson

179408
type: Taxonomy
SIO_000068: taxonomy

OSC7112_RS35050
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS35050
old locus tag: Osc7112_6922
so part of: sequence
location: 127..984
location: region:127-984:1
so has part: feature:127-984:1:exon
subclass of: SO_0000010

position:127:1
position: 127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:984:1
position: 984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127-984:1:exon

OSC7112_RS35050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS35050
old locus tag: Osc7112_6922
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIPSVVQGTVEFAGKVFEVDSPRGLTWLESVTSFRFEPSGQNKPYTVRKESGKGGDYWYGYRKMAGKLHKKYIGKSSEISTTKLEEIAEALNTPPQSRVTDKVTEVTEGNERVVTEEVADKVTIKEFTALKSQVQALQQSLEALHEALLGKSDAGNCEELPKVTDNELQIELGNLQVTNLRLEMENQSLKEELEGARESISSQAFIIKDGREREWKLEEEVEKLRSQLTTERADREEIKNSAPIAIGVEFTEPATILSKLRTKRKKSSVTLADVEKILEILEES
SIO_010081: OSC7112_RS35050
subclass of: SO_0000673
so part of: OSC7112_RS35050
location: 127..984
location: region:127-984:1
so has part: feature:127-984:1:exon

WP_015179904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:127-984:1:exon

OSC7112_RS34190
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34190
old locus tag: Osc7112_6923
so part of: sequence
location: 984..1166
location: region:984-1166:1
so has part: feature:984-1166:1:exon
subclass of: SO_0000010

position:1166:1
position: 1166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:984-1166:1:exon

OSC7112_RS34190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34190
old locus tag: Osc7112_6923
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSTFECPHCKSRYNNWISSVYNSETQIDLTTYQCKQCLNFFEIAWSTEDKAEGEQVLEM
SIO_010081: OSC7112_RS34190
subclass of: SO_0000673
so part of: OSC7112_RS34190
location: 984..1166
location: region:984-1166:1
so has part: feature:984-1166:1:exon

WP_015179905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:984-1166:1:exon

OSC7112_RS34195
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34195
old locus tag: Osc7112_6924
so part of: sequence
location: 1341..1682
location: region:1341-1682:1
so has part: feature:1341-1682:1:exon
subclass of: SO_0000010

position:1341:1
position: 1341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1682:1
position: 1682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1341-1682:1:exon

OSC7112_RS34195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34195
old locus tag: Osc7112_6924
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALSDDCLCGRSQHLTFASNDKIVVDGKTFARVLSLINLSIDDLTNARHREIFLECLNTYLVESPAESERDDAYIFRASLLLDSYYEYVPACLALIHSNLEEACTLMREVKYG
SIO_010081: OSC7112_RS34195
subclass of: SO_0000673
so part of: OSC7112_RS34195
location: 1341..1682
location: region:1341-1682:1
so has part: feature:1341-1682:1:exon

WP_015179906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1341-1682:1:exon

OSC7112_RS34200
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34200
old locus tag: Osc7112_6925
so part of: sequence
location: 1675..2163
location: region:1675-2163:1
so has part: feature:1675-2163:1:exon
subclass of: SO_0000010

position:1675:1
position: 1675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2163:1
position: 2163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1675-2163:1:exon

OSC7112_RS34200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34200
old locus tag: Osc7112_6925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015178440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKPPASCRRIDQLKAIAFDCGFTNEDARQFGKLSKTSTWEALLELYFVDGETLDRLLDKSLDSVDVVDASVDTTPDLLRVDSFAVDSVDTLDWTGDGSFPVCCFSRQNSTSFLDWVDFGQLIALALASAGVFLLAMNLWRQINPLNLFPPIKVNIQIGASK
SIO_010081: OSC7112_RS34200
subclass of: SO_0000673
so part of: OSC7112_RS34200
location: 1675..2163
location: region:1675-2163:1
so has part: feature:1675-2163:1:exon

WP_015179907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1675-2163:1:exon

OSC7112_RS34205
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34205
old locus tag: Osc7112_6926
so part of: sequence
location: 2163..2681
location: region:2163-2681:1
so has part: feature:2163-2681:1:exon
subclass of: SO_0000010

position:2681:1
position: 2681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2163-2681:1:exon

OSC7112_RS34205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34205
old locus tag: Osc7112_6926
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015175302.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGLMQKLLGGGNQSATQSGGGLVHDGSHNIDKSKVMAATSADAISPLNPGNFAAGERSVPIIPAPRYFTEEEADAMKELAKQKTEGAKQSKRGYEAAGKIEEADAKVHKYHRKYEGVVADNELTKKRADVRLGKHLHNQRPAYARLGMSLDQAASNAETRISEIKAKLQGAN
SIO_010081: OSC7112_RS34205
subclass of: SO_0000673
so part of: OSC7112_RS34205
location: 2163..2681
location: region:2163-2681:1
so has part: feature:2163-2681:1:exon

WP_015179908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2163-2681:1:exon

OSC7112_RS34210
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34210
old locus tag: Osc7112_6927
so part of: sequence
location: 2681..2902
location: region:2681-2902:1
so has part: feature:2681-2902:1:exon
subclass of: SO_0000010

position:2902:1
position: 2902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2681-2902:1:exon

OSC7112_RS34210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34210
old locus tag: Osc7112_6927
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKKCDPNGNPLTPEFATCIALLHGAKTCVRWRTSNSLGMSLLEKSEQQLMDTVTSAIDEAVRNLEALQEAVR
SIO_010081: OSC7112_RS34210
subclass of: SO_0000673
so part of: OSC7112_RS34210
location: 2681..2902
location: region:2681-2902:1
so has part: feature:2681-2902:1:exon

WP_015179909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2681-2902:1:exon

OSC7112_RS34215
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34215
old locus tag: Osc7112_6928
so part of: sequence
location: 2899..3168
location: region:2899-3168:1
so has part: feature:2899-3168:1:exon
subclass of: SO_0000010

position:2899:1
position: 2899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3168:1
position: 3168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2899-3168:1:exon

OSC7112_RS34215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34215
old locus tag: Osc7112_6928
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKAIAILNDFLMVAVASSFLCWVASLHPNALALVRAVYIIFAVLWMLSWALDDWLVVRLKIKLCDLQGILCLGFAAAAIGLGVMICRA
SIO_010081: OSC7112_RS34215
subclass of: SO_0000673
so part of: OSC7112_RS34215
location: 2899..3168
location: region:2899-3168:1
so has part: feature:2899-3168:1:exon

WP_015179910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2899-3168:1:exon

OSC7112_RS34220
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34220
old locus tag: Osc7112_6929
so part of: sequence
location: 3111..3752
location: region:3111-3752:1
so has part: feature:3111-3752:1:exon
subclass of: SO_0000010

position:3111:1
position: 3111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3752:1
position: 3752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3111-3752:1:exon

OSC7112_RS34220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34220
old locus tag: Osc7112_6929
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015175304.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRIRSSSDRTGGDDMSRLKVSVLTVSAFTLWLAPPFLLSRKVPLHNLTTGLALLGSWACCFEARRVADKLNQVEEFEAMKKAAINADVADELATEIYVSEQQRRIEAEAILNTNQRTEQEKETELDSIRESLELLVNKTSSNSGELAVVNLSTRQREKIELILRCHAKGINGKNKILKEVWGVSAGSSQTYRDAKAEYEYLMPFIKQEEEEG
SIO_010081: OSC7112_RS34220
subclass of: SO_0000673
so part of: OSC7112_RS34220
location: 3111..3752
location: region:3111-3752:1
so has part: feature:3111-3752:1:exon

WP_015179911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3111-3752:1:exon

OSC7112_RS34225
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS34225
old locus tag: Osc7112_6930
so part of: sequence
location: 3993..4376
location: region:3993-4376:1
so has part: feature:3993-4376:1:exon
subclass of: SO_0000010

position:3993:1
position: 3993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4376:1
position: 4376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3993-4376:1:exon

OSC7112_RS34225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS34225
old locus tag: Osc7112_6930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYLTSCIKFVEHQFSQYSGGLTWMFVGRPIPKEKWKKYMSFWGAVIWRVKRTLKNQIKAMFEAWLGIHFFELVVDIFLWVIDTLTTPDTDLCKIEASRDPPKIFIPIPKFIESNGCARSDLPVRSSF
SIO_010081: OSC7112_RS34225
subclass of: SO_0000673
so part of: OSC7112_RS34225
location: 3993..4376
location: region:3993-4376:1
so has part: feature:3993-4376:1:exon

WP_015179912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3993-4376:1:exon

OSC7112_RS35055
type: Gene
subclass of: SO_0000704
RO_0002162: 179408
locus tag: OSC7112_RS35055
old locus tag: Osc7112_6931
so part of: sequence
location: 4504..7383
location: region:4504-7383:1
so has part: feature:4504-7383:1:exon
subclass of: SO_0000010

position:4504:1
position: 4504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7383:1
position: 7383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4504-7383:1:exon

OSC7112_RS35055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 179408
locus tag: OSC7112_RS35055
old locus tag: Osc7112_6931
inference: COORDINATES: protein motif:HMM:NF024547.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3987 domain-containing protein
translation: MNSSSDNGQSTSRALLRASKTSPCPHCGKPDWCYFIGELSVCNREQPPATGWEATSKADKDGKTYYAPIQQKKAIRPRGTRDWYYPARDGSPLVRVVRFDDGKGTKANWTQMSWGKCKSSRQMGWIGGIQGVARENIPIYRYAEVKKAIANNELIFIVEGESCADTLWGLGLAATCNIGGSGKWRNTDTSDLEGATVVIVPDRDKPGIKHAELLHQEFPGALWLYPFPESKAWENLPESKGLDIADWVEHHKITADDIKAAIGEKKVFEVPRQAPKVVSHPKFEVPSLSDLAAKIDELLHSDLRRSQLQIKISELAQTYRLTPAEVQKIYRTREQELEQELEQEDTAAEVARLLSAQKSQIELSEILPPGLAAPIEKLAAKLNLKTECYLAALLTQVSSLFKVGSEVLLRRDTDYRCTPNYFAGIVAESSQKKSPIMRAMIDRPMQSLREKARKEYQKALADYEEEYRQWKAAKGDNKGLPPKEPRPRLYSFSKSTGEGILYQVAEFPDQALMYRCDELASLFKSANQYRGGKGSDDEDLLEFWNGTGSTVLRASGTKADLDGLLLSVFGTIQPDVLATLLKDCSDANGKFARFDFVFQPLAASKLSEEDSGGFDITPMLAALYLKIDALPALKMELSPDAKRLFTAFYNAMEDRRVAEPKQGIRAMVGKMPEKVGKMAAIIYALTCAFNGVEVSSSIPKAAVEAAIKFVKFSSDQIASLYAEFSDRTALAPNLAKIISLAERKGGTISLYQIRQSFNGKERPEVQRVREWLTELSNLKYGEVTSEGRKITFNLSPQSTLSTLAENPYTDKVYPVHIPQNTSPQSPQSSLLKTSKVDESGLKVDYSVHITKPLPDKALKPNVDNVDLILPASKNTQFLMMSCTTQISSDDAEKLRDIALVWWPEYYPAQLQNLLTQMYGWNAPGTKYDVAVIADWLESQDELVRDRITELVHQKTASLT
SIO_010081: OSC7112_RS35055
subclass of: SO_0000673
so part of: OSC7112_RS35055
location: 4504..7383
location: region:4504-7383:1
so has part: feature:4504-7383:1:exon

WP_015179913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4504-7383:1:exon