Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence.
Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Oscillatoria.
Finished plasmid 2 of genome of Oscillatoria sp. PCC 7112
Submitted (31-MAY-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003616.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087498\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\nContacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Oscillatoria sp. PCC 7112\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: USA\nenvironment :: Missing\nnum_replicons :: 6\nref_biomaterial :: PCC 7112\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04314\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: soil in orchid house\nIsolation Comments :: isolated by A Neilson in 1970\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/12/2022 03:36:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,049\nCDSs (total) :: 6,964\nGenes (coding) :: 6,715\nCDSs (with protein) :: 6,715\nGenes (RNA) :: 85\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 249\nCDSs (without protein) :: 249\nPseudo Genes (ambiguous residues) :: 0 of 249\nPseudo Genes (frameshifted) :: 118 of 249\nPseudo Genes (incomplete) :: 150 of 249\nPseudo Genes (internal stop) :: 50 of 249\nPseudo Genes (multiple problems) :: 62 of 249\nCRISPR Arrays :: 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Oscillatoria nigro-viridis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017386.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217603.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864095.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488111.1
COORDINATES: similar to AA sequence:RefSeq:WP_006634396.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211861.1
COORDINATES: similar to AA sequence:RefSeq:WP_015151465.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006099638.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015195675.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015149046.1
COORDINATES: similar to AA sequence:RefSeq:WP_015200625.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217861.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120991.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015201554.1
COORDINATES: similar to AA sequence:RefSeq:WP_015131179.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186259.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006530432.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007355626.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612129.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
ISKra4-like element ISOni2 family transposase
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF026926.2
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: protein motif:HMM:TIGR01643.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019227.2
polymorphic toxin-type HINT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612130.1
ISKra4-like element ISOni1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015179838.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211724.1
COORDINATES: similar to AA sequence:RefSeq:WP_006634270.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278824.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_015179304.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211718.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211825.1
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211822.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007354274.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494628.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006106167.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201526.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015131175.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015224543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015175181.1
COORDINATES: similar to AA sequence:RefSeq:WP_015174456.1
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_007355549.1
COORDINATES: similar to AA sequence:RefSeq:WP_006102444.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488670.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179685.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611286.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_012596011.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015211830.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211833.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211834.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217560.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015177458.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611618.1
COORDINATES: protein motif:HMM:NF011539.0
bifunctional 3'-5' exonuclease/DNA polymerase
COORDINATES: similar to AA sequence:RefSeq:WP_076612309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015146420.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611791.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017296611.1
UBP-type zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007353751.1
COORDINATES: similar to AA sequence:RefSeq:WP_017320615.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015174246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316796.1
COORDINATES: protein motif:HMM:NF024298.2
COORDINATES: similar to AA sequence:RefSeq:WP_015155876.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010873910.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163037.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316793.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017741430.1
COORDINATES: similar to AA sequence:RefSeq:WP_015129445.1
COORDINATES: similar to AA sequence:RefSeq:WP_012791292.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012408643.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181744.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_015634734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120318.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786864.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017741429.1
COORDINATES: similar to AA sequence:RefSeq:WP_011141422.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873897.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869715.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016867209.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179727.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352802.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316797.1
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015171920.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316800.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494963.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF024954.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007416684.1
GO:0005267 - potassium channel activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015159323.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: similar to AA sequence:RefSeq:WP_006622497.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210083.1
COORDINATES: similar to AA sequence:RefSeq:WP_013335051.1
COORDINATES: similar to AA sequence:RefSeq:WP_017720659.1
COORDINATES: similar to AA sequence:RefSeq:WP_017720660.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006632816.1
COORDINATES: similar to AA sequence:RefSeq:WP_009554898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015175022.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497011.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355623.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290144.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354252.1
COORDINATES: similar to AA sequence:RefSeq:WP_006633857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015202579.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015176281.1
COORDINATES: protein motif:HMM:NF024932.2
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316505.1
COORDINATES: similar to AA sequence:RefSeq:WP_006635972.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355553.1
COORDINATES: similar to AA sequence:RefSeq:WP_017743366.1
COORDINATES: protein motif:HMM:NF012618.2
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: protein motif:HMM:NF025298.2
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: similar to AA sequence:RefSeq:WP_019487984.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355555.1
COORDINATES: similar to AA sequence:RefSeq:WP_015164300.1
COORDINATES: similar to AA sequence:RefSeq:WP_015164301.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007354619.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179889.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007353008.1
COORDINATES: similar to AA sequence:RefSeq:WP_007353007.1