Skermanella mucosa strain KEMB 2255-438 plasmid pSM-2, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Skermanella.
Submitted (27-OCT-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
Submitted (21-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP086108.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v0.4.9b\nAssembly Name :: Skermanella mucosa Genome and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 820.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 06:23:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,293\nCDSs (total) :: 7,207\nGenes (coding) :: 7,062\nCDSs (with protein) :: 7,062\nGenes (RNA) :: 86\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 5\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 40 of 145\nPseudo Genes (incomplete) :: 126 of 145\nPseudo Genes (internal stop) :: 19 of 145\nPseudo Genes (multiple problems) :: 33 of 145\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020177169.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_014188394.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007092152.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010641767.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014249677.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018645801.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011503478.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007424223.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009516758.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018455365.1
COORDINATES: similar to AA sequence:RefSeq:WP_004339052.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011338619.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: protein motif:HMM:NF016107.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF024967.2
COORDINATES: similar to AA sequence:RefSeq:WP_014249314.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: similar to AA sequence:RefSeq:WP_019947283.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011957510.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568916.1
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: protein motif:HMM:TIGR01840.1
COORDINATES: similar to AA sequence:RefSeq:WP_019451015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388254.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009493189.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015152342.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_006482818.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_014067214.1
COORDINATES: protein motif:HMM:NF013793.2
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_013341443.1
COORDINATES: similar to AA sequence:RefSeq:WP_017989408.1
GO:0019180 - dTDP-4-amino-4,6-dideoxygalactose transaminase activity [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
dTDP-4-amino-4,6-dideoxygalactose transaminase
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_009823662.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568914.1
COORDINATES: protein motif:HMM:NF015649.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019404000.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020092154.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014766158.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_007439291.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188042.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012975763.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241746.1
COORDINATES: similar to AA sequence:RefSeq:WP_018906865.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011996141.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009551963.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015147877.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023737.2
sugar dehydrogenase complex small subunit
COORDINATES: protein motif:HMM:NF017050.2
COORDINATES: protein motif:HMM:NF019351.2
COORDINATES: protein motif:HMM:NF019009.2
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015665879.1
GO:0009028 - tartronate-semialdehyde synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018427822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007855059.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0046487 - glyoxylate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014240053.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004531.0
COORDINATES: similar to AA sequence:RefSeq:WP_012975784.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177977.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013983520.1
COORDINATES: similar to AA sequence:RefSeq:WP_010365377.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003296919.1
COORDINATES: similar to AA sequence:RefSeq:WP_003296917.1
COORDINATES: similar to AA sequence:RefSeq:WP_007604585.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF022894.2
COORDINATES: protein motif:HMM:NF013921.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014247161.1
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_007670363.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019236.2
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098521.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017271723.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492587.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739860.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004272072.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_011443490.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555647.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017967833.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006396374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690931.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878398.1
COORDINATES: similar to AA sequence:RefSeq:WP_019196400.1
COORDINATES: protein motif:HMM:NF013397.2
formate/nitrite transporter family protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_007010997.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973698.1
COORDINATES: similar to AA sequence:RefSeq:WP_008622462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012076110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012651889.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_011926124.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581242.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012974588.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006022827.1
COORDINATES: similar to AA sequence:RefSeq:WP_014240280.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181252.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: similar to AA sequence:RefSeq:WP_015824292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978277.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250136.1
COORDINATES: similar to AA sequence:RefSeq:WP_016493731.1
COORDINATES: similar to AA sequence:RefSeq:WP_008964540.1
COORDINATES: similar to AA sequence:RefSeq:WP_008968440.1
COORDINATES: similar to AA sequence:RefSeq:WP_018455066.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013377238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018043007.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014250237.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200248.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009763563.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331955.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460053.1
COORDINATES: protein motif:HMM:NF014375.2
GO:0046872 - metal ion binding [Evidence IEA]
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_017841356.1
COORDINATES: similar to AA sequence:RefSeq:WP_010626451.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008616479.1
COORDINATES: similar to AA sequence:RefSeq:WP_001099323.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015129 - lactate transmembrane transporter activity [Evidence IEA]
GO:0015727 - lactate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015950180.1
TIGR03885 family FMN-dependent LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012568176.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897351.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018043019.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0019358 - nicotinate nucleotide salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013792782.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015218976.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: similar to AA sequence:RefSeq:WP_014241904.1
COORDINATES: similar to AA sequence:RefSeq:WP_010684914.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008613717.1
COORDINATES: similar to AA sequence:RefSeq:WP_011389165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011389166.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_008616480.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199886.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688841.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03177.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200065.1
type II and III secretion system protein family protein
COORDINATES: protein motif:HMM:NF021025.2
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: similar to AA sequence:RefSeq:WP_008492861.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200075.1
COORDINATES: protein motif:HMM:NF024792.2
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006884881.1
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006037984.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF019589.2
COORDINATES: protein motif:HMM:NF019605.2
COORDINATES: protein motif:HMM:NF012337.2
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_013286908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012475117.1
aconitase/3-isopropylmalate dehydratase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007960669.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:TIGR02087.1
catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012501882.1
COORDINATES: similar to AA sequence:RefSeq:WP_013248080.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF016629.2
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF015550.2
GO:0051276 - chromosome organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: protein motif:HMM:NF024829.2
COORDINATES: protein motif:HMM:NF012869.2
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019646800.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014242052.1
COORDINATES: similar to AA sequence:RefSeq:WP_017266812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008972510.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008836651.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020186465.1
sialic acid TRAP transporter substrate-binding protein SiaP
COORDINATES: similar to AA sequence:RefSeq:WP_017275464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011089570.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564387.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241998.1
COORDINATES: similar to AA sequence:RefSeq:WP_012290059.1
COORDINATES: similar to AA sequence:RefSeq:WP_002444748.1
COORDINATES: similar to AA sequence:RefSeq:WP_010684881.1
COORDINATES: similar to AA sequence:RefSeq:WP_018182315.1
COORDINATES: similar to AA sequence:RefSeq:WP_006611404.1
COORDINATES: similar to AA sequence:RefSeq:WP_011507907.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_009764435.1
COORDINATES: similar to AA sequence:RefSeq:WP_019459773.1
COORDINATES: similar to AA sequence:RefSeq:WP_016856513.1
COORDINATES: similar to AA sequence:RefSeq:WP_015190571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015928355.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887645.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403994.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LysR substrate-binding domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_013169169.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018647649.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927196.1
COORDINATES: similar to AA sequence:RefSeq:WP_017607865.1
COORDINATES: protein motif:HMM:TIGR00180.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009402601.1
COORDINATES: similar to AA sequence:RefSeq:WP_012641014.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969591.1
COORDINATES: similar to AA sequence:RefSeq:WP_015007699.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003530745.1
COORDINATES: similar to AA sequence:RefSeq:WP_013495758.1
COORDINATES: similar to AA sequence:RefSeq:WP_010677998.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245342.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF016513.2
COORDINATES: similar to AA sequence:RefSeq:WP_011160054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012238005.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007731716.1
COORDINATES: similar to AA sequence:RefSeq:WP_007581200.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347972.1
COORDINATES: protein motif:HMM:NF016114.2
COORDINATES: similar to AA sequence:RefSeq:WP_012177230.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009314887.1
COORDINATES: similar to AA sequence:RefSeq:WP_020288700.1
COORDINATES: similar to AA sequence:RefSeq:WP_018045411.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011665338.1
COORDINATES: similar to AA sequence:RefSeq:WP_008391893.1
COORDINATES: protein motif:HMM:NF013853.2
COORDINATES: similar to AA sequence:RefSeq:WP_018438858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761240.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530964.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121257.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497841.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452001.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF019205.2
COORDINATES: similar to AA sequence:RefSeq:WP_008163473.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526488.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF024816.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF017515.2
COORDINATES: similar to AA sequence:RefSeq:WP_015080894.1
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: similar to AA sequence:RefSeq:WP_016711157.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:TIGR01194.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF016983.2
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006468718.1
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_004299604.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200001.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256772.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_016334372.1
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF024996.2
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006519624.1
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011471864.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188034.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188043.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975766.1
COORDINATES: similar to AA sequence:RefSeq:WP_014240273.1
COORDINATES: similar to AA sequence:RefSeq:WP_008384651.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011390031.1
proton-translocating transhydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014239969.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF014021.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011385006.1
COORDINATES: similar to AA sequence:RefSeq:WP_011385007.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008970216.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_012568844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967605.1
COORDINATES: similar to AA sequence:RefSeq:WP_012484162.1
LysR family transcriptional regulator ArgP
COORDINATES: similar to AA sequence:RefSeq:WP_014238890.1
COORDINATES: similar to AA sequence:RefSeq:WP_008130735.1
FMN-binding negative transcriptional regulator
COORDINATES: protein motif:HMM:NF018455.2
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_014200112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188056.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008949 - oxalyl-CoA decarboxylase activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009737290.1
GO:0033608 - formyl-CoA transferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]; GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018262147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188058.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014251286.1