Dickeya fangzhongdai strain DSM 101947 plasmid pJS5, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya.
Genome Sequence of a Type Strain of Dickeya fangzhongdai Causing Bleeding Canker of Pear Tree Trunks
Submitted (17-NOV-2017) Department of Plant Pathology,Nanjing Agricultural University, Nanjing Agricultural University, No.1 Weigang, Nanjing, Jiangsu 210095, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP025004.1.\nBacteria and source DNA available from Department of Plant\nPathology, Nanjing Agricultural University, 1 Weigang, Nanjing,\nJiangsu 210095, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 11-NOV-2014\nAssembly Method :: GS De Novo Assembler v. Jan-2015\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 02:59:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,452\nCDSs (total) :: 4,348\nGenes (coding) :: 4,286\nCDSs (with protein) :: 4,286\nGenes (RNA) :: 104\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 75\nncRNAs :: 7\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 24 of 62\nPseudo Genes (incomplete) :: 49 of 62\nPseudo Genes (internal stop) :: 8 of 62\nPseudo Genes (multiple problems) :: 17 of 62\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010566328.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016769.2
MbeD family mobilization/exclusion protein
COORDINATES: protein motif:HMM:NF016710.2
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006674374.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_006674372.1
COORDINATES: protein motif:HMM:NF041622.1
COORDINATES: similar to AA sequence:RefSeq:WP_006674370.1