Candidatus Doolittlea endobia isolate DEMHIR chromosome I, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Candidatus Doolittlea.
Submitted (18-JAN-2016) UNIVERSITY OF SOUTH BOHEMIA, Branisovska 31, Czech Republic
REFSEQ INFORMATION: The reference sequence is identical to\nLN999833.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:57:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 632\nCDSs (total) :: 585\nGenes (coding) :: 504\nCDSs (with protein) :: 504\nGenes (RNA) :: 47\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 3\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 67 of 81\nPseudo Genes (incomplete) :: 40 of 81\nPseudo Genes (internal stop) :: 46 of 81\nPseudo Genes (multiple problems) :: 50 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:NP_311462.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005159411.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015960048.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002214829.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008785463.1
catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
COORDINATES: similar to AA sequence:RefSeq:WP_000553460.1
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]; GO:0046854 - phosphatidylinositol phosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013975453.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015580569.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_005285286.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
23S rRNA pseudouridine(2605) synthase RluB
COORDINATES: similar to AA sequence:RefSeq:WP_013317812.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012147065.1
glucosamine-6-phosphate regulated; inactivates the glmS upregulator glmZ; frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011410061.1
PTS IIA-like nitrogen regulatory protein PtsN
COORDINATES: similar to AA sequence:RefSeq:WP_003861862.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002442044.1
lipopolysaccharide ABC transporter substrate-binding protein LptA
COORDINATES: similar to AA sequence:RefSeq:WP_011410066.1
LPS export ABC transporter periplasmic protein LptC
COORDINATES: similar to AA sequence:RefSeq:WP_000030002.1
forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_008806649.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410069.1
phospholipid ABC transporter ATP-binding protein MlaF
COORDINATES: similar to AA sequence:RefSeq:WP_013650484.1
lipid asymmetry maintenance ABC transporter permease subunit MlaE
COORDINATES: similar to AA sequence:RefSeq:WP_009114746.1
GO:0015914 - phospholipid transport [Evidence IEA]
outer membrane lipid asymmetry maintenance protein MlaD
COORDINATES: similar to AA sequence:RefSeq:WP_012883044.1
COORDINATES: similar to AA sequence:RefSeq:WP_005180174.1
lipid asymmetry maintenance protein MlaB
COORDINATES: similar to AA sequence:RefSeq:WP_016150790.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002209458.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006178053.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_311497.1
GO:0009019 - tRNA (guanine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:NP_461603.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_002210826.1
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015848109.1
BolA family iron metabolism protein IbaG
COORDINATES: similar to AA sequence:RefSeq:WP_012847382.1
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011410077.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF018049.2
COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1
COORDINATES: similar to AA sequence:RefSeq:WP_014887871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005171938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008785508.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005176971.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410344.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020303765.1
COORDINATES: similar to AA sequence:RefSeq:WP_002209621.1
catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016266158.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004851795.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011411241.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014499287.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_416234.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_708001.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039287.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016942932.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO:0051604 - protein maturation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004885876.1
rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017491372.1
GO:0008658 - penicillin binding [Evidence IEA]; GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012883863.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014888204.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008456064.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016231545.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005125143.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010282077.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010282080.1
COORDINATES: similar to AA sequence:RefSeq:WP_015683720.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006323929.1
COORDINATES: similar to AA sequence:RefSeq:WP_006708182.1
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012146305.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004151980.1
COORDINATES: similar to AA sequence:RefSeq:WP_005130181.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005132123.1
catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000170360.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004340 - glucokinase activity [Evidence IEA]; GO:0005536 - glucose binding [Evidence IEA]
GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411550.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017458944.1
catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_011520372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014268075.1
COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1
COORDINATES: similar to AA sequence:RefSeq:WP_015379196.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002210077.1
COORDINATES: similar to AA sequence:RefSeq:WP_015848444.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410945.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]; GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014887817.1
high frequency lysogenization protein HflD
COORDINATES: similar to AA sequence:RefSeq:WP_002950897.1
COORDINATES: similar to AA sequence:RefSeq:WP_016256924.1
two-component system response regulator PhoP
COORDINATES: similar to AA sequence:RefSeq:WP_011410941.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
two-component system sensor histidine kinase PhoQ
COORDINATES: similar to AA sequence:RefSeq:WP_014354140.1
COORDINATES: similar to AA sequence:RefSeq:WP_011409882.1
GO:0004784 - superoxide dismutase activity [Evidence IEA]
GO:0006801 - superoxide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410534.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: similar to AA sequence:RefSeq:WP_001396736.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
ATP-dependent protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_004156306.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850491.1
COORDINATES: similar to AA sequence:RefSeq:WP_011147562.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011410414.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_004388992.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016946235.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_011815567.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0071555 - cell wall organization [Evidence IEA]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: similar to AA sequence:RefSeq:WP_005124610.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: similar to AA sequence:RefSeq:WP_012847506.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_002210435.1
GO:0051301 - cell division [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: similar to AA sequence:RefSeq:WP_011410422.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004388397.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_308125.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015965916.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011147811.1
GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
UDP-3-O-acyl-N-acetylglucosamine deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_004170700.1
COORDINATES: similar to AA sequence:RefSeq:NP_308129.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004706254.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster insertion protein ErpA
COORDINATES: similar to AA sequence:RefSeq:WP_013202487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014608909.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0033592 - RNA strand annealing activity [Evidence IEA]; GO:0034057 - RNA strand-exchange activity [Evidence IEA]
GO:0010608 - post-transcriptional regulation of gene expression [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411651.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013185302.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015841784.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013367665.1
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: similar to AA sequence:RefSeq:NP_308053.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005283409.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_459413.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_011410408.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017458860.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410503.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011410121.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004810 - CCA tRNA nucleotidyltransferase [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IEA]
multifunctional CCA addition/repair protein
COORDINATES: similar to AA sequence:RefSeq:WP_005122606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410139.1
1-acylglycerol-3-phosphate O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011410138.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_460412.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012885761.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002209373.1
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005130912.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012005243.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011193152.1
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014887927.1
COORDINATES: similar to AA sequence:RefSeq:WP_005166606.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005125127.1
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013649437.1
COORDINATES: similar to AA sequence:RefSeq:WP_013315900.1
COORDINATES: similar to AA sequence:RefSeq:WP_005175847.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410287.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_004875348.1
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_010253800.1
GO:0042277 - peptide binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]; GO:0060274 - maintenance of stationary phase [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0050821 - protein stabilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410290.1
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]; GO:0015920 - lipopolysaccharide transport [Evidence IEA]; GO:0010033 - response to organic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016151667.1
GO:0051087 - chaperone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000919160.1
COORDINATES: similar to AA sequence:RefSeq:WP_017900428.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0044571 - [2Fe-2S] cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009638942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412058.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462310.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462210.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002210185.1
COORDINATES: similar to AA sequence:RefSeq:WP_005971510.1
GO:0016436 - rRNA (uridine) methyltransferase activity [Evidence IEA]
GO:0001510 - RNA methylation [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]
23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
COORDINATES: similar to AA sequence:RefSeq:YP_005229027.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002210071.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008502856.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_015699237.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: similar to AA sequence:RefSeq:NP_312552.1
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004155916.1
affects carbohydrate metabolism; has regulatory role in many processes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002209448.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014888567.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_311790.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411721.1
GO:0008409 - 5'-3' exonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: similar to AA sequence:RefSeq:WP_002215386.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411178.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015696299.1
GO:0004802 - transketolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411076.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: similar to AA sequence:RefSeq:WP_015962291.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412206.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410911.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410912.1
GO:0008995 - ribonuclease E activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013975560.1
23S rRNA pseudouridine(955/2504/2580) synthase RluC
COORDINATES: similar to AA sequence:RefSeq:WP_011147057.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410918.1
COORDINATES: similar to AA sequence:RefSeq:WP_013975558.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013508660.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016940845.1
COORDINATES: similar to AA sequence:RefSeq:WP_015672193.1
COORDINATES: similar to AA sequence:RefSeq:WP_019845812.1
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005225140.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004098636.1
GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]
pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: similar to AA sequence:RefSeq:WP_011410552.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001364632.1
GO:0008150 - biological_process [Evidence IEA]
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_006683423.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
phosphoribosylformylglycinamidine synthase
COORDINATES: similar to AA sequence:RefSeq:WP_003621071.1
COORDINATES: similar to AA sequence:RefSeq:WP_002209161.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_019084259.1
GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019842885.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004955984.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410202.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410199.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_001402796.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013200486.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410196.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: similar to AA sequence:RefSeq:WP_011409990.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA
COORDINATES: similar to AA sequence:RefSeq:WP_001016648.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1
COORDINATES: similar to AA sequence:RefSeq:WP_005163296.1
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_020456251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009111556.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1
COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411841.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: similar to AA sequence:RefSeq:WP_017348082.1
COORDINATES: similar to AA sequence:RefSeq:WP_004169486.1
penicillin-binding protein activator LpoB
COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410738.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0034775 - glutathione transmembrane transport [Evidence IEA]
cysteine/glutathione ABC transporter ATP-binding protein/permease CydC
COORDINATES: similar to AA sequence:RefSeq:WP_012105386.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0042883 - cysteine transport [Evidence IEA]
cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
COORDINATES: similar to AA sequence:RefSeq:WP_000089046.1
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014914707.1
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410760.1
GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015848543.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: similar to AA sequence:RefSeq:WP_011412234.1
GO:0032977 - membrane insertase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933881.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_014172301.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004246509.1
COORDINATES: similar to AA sequence:RefSeq:YP_005225393.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002461515.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0042026 - protein refolding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011906449.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411171.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0006884 - cell volume homeostasis [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014079.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012666921.1
COORDINATES: similar to AA sequence:RefSeq:WP_011094808.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411657.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1
COORDINATES: similar to AA sequence:RefSeq:WP_003848745.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013975680.1
COORDINATES: similar to AA sequence:RefSeq:WP_007888214.1
COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411587.1
bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
COORDINATES: similar to AA sequence:RefSeq:WP_011411585.1
COORDINATES: similar to AA sequence:RefSeq:WP_015854419.1
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_012906640.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013814141.1
outer membrane protein assembly factor BamB
COORDINATES: similar to AA sequence:RefSeq:WP_011411822.1
GO:0008320 - protein transmembrane transporter activity [Evidence IEA]
lipoprotein insertase outer membrane protein LolB
COORDINATES: similar to AA sequence:RefSeq:WP_010304646.1
COORDINATES: similar to AA sequence:RefSeq:WP_013975647.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001538644.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411168.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411988.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016506431.1
cAMP-activated global transcriptional regulator CRP
COORDINATES: protein motif:HMM:NF013382.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017693697.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0034040 - ATPase-coupled lipid transmembrane transporter activity [Evidence IEA]
lipid A ABC transporter ATP-binding protein/permease MsbA
COORDINATES: similar to AA sequence:RefSeq:WP_011410857.1
GO:0009029 - tetraacyldisaccharide 4'-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011817284.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004958050.1
COORDINATES: similar to AA sequence:RefSeq:WP_006704428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013357366.1
TusE/DsrC/DsvC family sulfur relay protein
COORDINATES: similar to AA sequence:RefSeq:WP_006325750.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019083174.1
COORDINATES: similar to AA sequence:RefSeq:NP_707171.1
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]; GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
COORDINATES: similar to AA sequence:RefSeq:WP_012145396.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013975520.1
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002228454.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410282.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004715938.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
carbamoyl-phosphate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011410284.1
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010253765.1
GO:0008803 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH
COORDINATES: similar to AA sequence:RefSeq:WP_015848451.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_002354507.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411993.1
part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
envelope stress sensor histidine kinase CpxA
COORDINATES: similar to AA sequence:RefSeq:NP_462940.1
envelope stress response regulator transcription factor CpxR
COORDINATES: similar to AA sequence:RefSeq:WP_005120709.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014915875.1
GO:0008693 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]
bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_005184605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410252.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC
COORDINATES: similar to AA sequence:RefSeq:WP_011411261.1
GO:0016896 - exoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]; GO:0042780 - tRNA 3'-end processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411944.1
COORDINATES: similar to AA sequence:RefSeq:WP_000168322.1
COORDINATES: similar to AA sequence:RefSeq:WP_002210615.1
GO:0008653 - lipopolysaccharide metabolic process [Evidence IEA]
lipopolysaccharide assembly protein LapB
COORDINATES: similar to AA sequence:RefSeq:WP_011411231.1
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411447.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015958768.1
GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014888919.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015580501.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011094855.1
GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IEA]
GO:0019243 - methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008813301.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005068993.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: similar to AA sequence:RefSeq:WP_006709047.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_011411091.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_012669013.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004386332.1
GO:0004324 - ferredoxin-NADP+ reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011412097.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004387403.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_308042.1
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: similar to AA sequence:RefSeq:WP_013975659.1
GO:0005542 - folic acid binding [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012767825.1
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312938.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004387079.1
COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012439922.1
COORDINATES: similar to AA sequence:RefSeq:WP_005165805.1
COORDINATES: similar to AA sequence:RefSeq:WP_004953928.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1
COORDINATES: similar to AA sequence:RefSeq:NP_312930.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012004738.1
COORDINATES: similar to AA sequence:RefSeq:WP_002886946.1
catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ornithine carbamoyltransferase subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_000416368.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004097243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767120.1
catalyzes the removal of N-terminal amino acids preferably from various peptides; a cyteinylglycinase, transcription regulator and site-specific recombination factor; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014887751.1
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter permease LptF
COORDINATES: similar to AA sequence:RefSeq:WP_004953051.1
LPS export ABC transporter permease LptG
COORDINATES: similar to AA sequence:RefSeq:WP_012004543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412000.1
COORDINATES: similar to AA sequence:RefSeq:WP_011193267.1
COORDINATES: similar to AA sequence:RefSeq:WP_017345461.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004393310.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:NP_459725.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009637966.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_011126364.1
COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004871142.1
COORDINATES: similar to AA sequence:RefSeq:WP_005968348.1
COORDINATES: similar to AA sequence:RefSeq:WP_014913761.1
COORDINATES: similar to AA sequence:RefSeq:WP_002353237.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011411402.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit A
COORDINATES: similar to AA sequence:RefSeq:YP_005228008.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1a ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006683700.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ia ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_000811042.1
GO:0008676 - 3-deoxy-8-phosphooctulonate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015840661.1
COORDINATES: similar to AA sequence:RefSeq:WP_004172582.1
COORDINATES: similar to AA sequence:RefSeq:NP_310416.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411254.1
COORDINATES: similar to AA sequence:RefSeq:WP_014888817.1
GO:0006534 - cysteine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013096952.1
COORDINATES: similar to AA sequence:RefSeq:WP_004157411.1
COORDINATES: similar to AA sequence:RefSeq:YP_005228599.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008814545.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_012368661.1
catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011411260.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410117.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_002910103.1
histone-like nucleoid-structuring protein H-NS
COORDINATES: similar to AA sequence:RefSeq:WP_015872174.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009113807.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1
responsible for the influx of magnesium ions; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012229070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
GO:0006268 - DNA unwinding involved in DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014888261.1
zinc uptake transcriptional repressor Zur
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: similar to AA sequence:RefSeq:WP_014888699.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012145496.1
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411954.1
GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsB
COORDINATES: similar to AA sequence:RefSeq:WP_000646075.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011092306.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005228602.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410927.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015580562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012848929.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410175.1
Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014657284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411705.1
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015673587.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012006116.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013650098.1
outer membrane lipoprotein chaperone LolA
COORDINATES: similar to AA sequence:RefSeq:WP_015670611.1
COORDINATES: similar to AA sequence:RefSeq:WP_004723105.1
outer membrane protein assembly factor BamD
COORDINATES: similar to AA sequence:RefSeq:WP_017374802.1
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
23S rRNA pseudouridine(1911/1915/1917) synthase RluD
COORDINATES: similar to AA sequence:RefSeq:NP_310560.1
transcription antiterminator/RNA stability regulator CspE
COORDINATES: similar to AA sequence:RefSeq:WP_002211058.1
COORDINATES: similar to AA sequence:RefSeq:WP_011145574.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008814046.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006820991.1
Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004246876.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410697.1
GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_309027.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410859.1
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016929783.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012104908.1
COORDINATES: similar to AA sequence:RefSeq:WP_011094555.1
COORDINATES: similar to AA sequence:RefSeq:YP_005228044.1
COORDINATES: similar to AA sequence:RefSeq:YP_005228043.1
GO:0030964 - NADH dehydrogenase complex [Evidence IEA]
GO:0051287 - NAD binding [Evidence IEA]; GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411418.1
NADH-quinone oxidoreductase subunit NuoE
COORDINATES: similar to AA sequence:RefSeq:WP_005969841.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: similar to AA sequence:RefSeq:WP_014888276.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
GO:0006120 - mitochondrial electron transport, NADH to ubiquinone [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoG
COORDINATES: similar to AA sequence:RefSeq:WP_010616080.1
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: similar to AA sequence:RefSeq:WP_015959823.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoI
COORDINATES: similar to AA sequence:RefSeq:WP_013574597.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411412.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: similar to AA sequence:RefSeq:WP_002210270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011815944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017491784.1
NADH-quinone oxidoreductase subunit NuoN
COORDINATES: similar to AA sequence:RefSeq:WP_015853856.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008458573.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF037183.2
permease-like cell division protein FtsX
COORDINATES: similar to AA sequence:RefSeq:WP_011409949.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_011409948.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005163956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011409944.1
GO:0097163 - sulfur carrier activity [Evidence IEA]
GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005129491.1
COORDINATES: similar to AA sequence:RefSeq:WP_013574579.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017799901.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004942378.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017346856.1
COORDINATES: similar to AA sequence:RefSeq:WP_013975548.1
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015672169.1
COORDINATES: similar to AA sequence:RefSeq:WP_016158083.1
GO:0042953 - lipoprotein transport [Evidence IEA]
lipoprotein-releasing ABC transporter permease subunit LolE
COORDINATES: similar to AA sequence:RefSeq:WP_011410937.1
lipoprotein-releasing ABC transporter ATP-binding protein LolD
COORDINATES: similar to AA sequence:RefSeq:WP_004976588.1
lipoprotein-releasing ABC transporter permease subunit LolC
COORDINATES: similar to AA sequence:RefSeq:WP_013318412.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_313168.2
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012578.2
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006812102.1
GO:0006970 - response to osmotic stress [Evidence IEA]
division/outer membrane stress-associated lipid-binding lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_011410090.1
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: similar to AA sequence:RefSeq:WP_014888332.1
COORDINATES: similar to AA sequence:RefSeq:WP_006708948.1
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001052215.1
COORDINATES: similar to AA sequence:RefSeq:WP_004923982.1
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011282562.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020882764.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017800291.1
COORDINATES: similar to AA sequence:RefSeq:WP_019077995.1
COORDINATES: similar to AA sequence:RefSeq:WP_013318054.1
COORDINATES: similar to AA sequence:RefSeq:WP_017347504.1
COORDINATES: similar to AA sequence:RefSeq:WP_014698963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014913790.1
menaquinone-dependent protoporphyrinogen IX dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015872577.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005228721.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410894.1
COORDINATES: similar to AA sequence:RefSeq:WP_012133276.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012764769.1
Catalyzes the only substrate-level phosphorylation in the TCA cycle; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1
DNA-binding transcriptional regulator Fis
COORDINATES: similar to AA sequence:RefSeq:WP_002212259.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: similar to AA sequence:RefSeq:WP_010283153.1
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012668493.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011279200.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516581.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017891854.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005272702.1
COORDINATES: similar to AA sequence:RefSeq:WP_014888471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411203.1
COORDINATES: similar to AA sequence:RefSeq:WP_012145404.1
COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_011412063.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:NP_312188.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1
COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1
COORDINATES: similar to AA sequence:RefSeq:NP_312192.1
COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1
COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1
COORDINATES: similar to AA sequence:RefSeq:WP_014888011.1
COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1
COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1
COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1
COORDINATES: similar to AA sequence:RefSeq:WP_005501250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1
COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1
COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1
COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1
COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1
COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1
COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410215.1
autotransporter assembly complex family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004933598.1
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007887589.1
has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005134479.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015671239.1
GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005158187.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1
COORDINATES: similar to AA sequence:RefSeq:WP_005126413.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004713343.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020455749.1
GO:0016740 - transferase activity [Evidence IEA]
lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
COORDINATES: similar to AA sequence:RefSeq:WP_011410907.1
COORDINATES: similar to AA sequence:RefSeq:WP_000494192.1
COORDINATES: similar to AA sequence:RefSeq:WP_004239470.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011411820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009112749.1
COORDINATES: similar to AA sequence:RefSeq:NP_312661.1
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_006177590.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229578.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_014605111.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411762.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411754.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410569.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_005125243.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410566.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016159144.1
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_016943358.1
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_311975.1
COORDINATES: similar to AA sequence:RefSeq:WP_011817223.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017493531.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014888530.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005123540.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002210135.1
transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004709337.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121000.1
COORDINATES: similar to AA sequence:RefSeq:WP_002208895.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009111165.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462384.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011192826.1
GO:0033856 - pyridoxine 5'-phosphate synthase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411607.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012146095.1
COORDINATES: similar to AA sequence:RefSeq:WP_007900580.1
GO:0050661 - NADP binding [Evidence IEA]; GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
NADP-dependent phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011412092.1
COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1
COORDINATES: similar to AA sequence:RefSeq:WP_003852912.1
COORDINATES: similar to AA sequence:RefSeq:WP_016930327.1
COORDINATES: similar to AA sequence:RefSeq:WP_019845200.1
COORDINATES: similar to AA sequence:RefSeq:WP_012822861.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF008634.1
GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006378 - mRNA polyadenylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013975734.1
COORDINATES: similar to AA sequence:RefSeq:WP_004947852.1
GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
GO:0008658 - penicillin binding [Evidence IEA]; GO:0008955 - peptidoglycan glycosyltransferase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
bifunctional glycosyl transferase/transpeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_012005163.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_001257852.1
regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011411765.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004958730.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_011412031.1
COORDINATES: similar to AA sequence:RefSeq:WP_005971779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411503.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411625.1
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_004866566.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014914245.1
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410246.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
GO:0000027 - ribosomal large subunit assembly [Evidence IEA]
DEAD/DEAH family ATP-dependent RNA helicase
COORDINATES: similar to AA sequence:RefSeq:WP_011410244.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410242.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011410241.1
GO:0019843 - rRNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002223151.1
COORDINATES: similar to AA sequence:RefSeq:WP_005131833.1
COORDINATES: similar to AA sequence:RefSeq:WP_012105030.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411269.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019452253.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411164.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020801817.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411162.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:YP_005226118.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410853.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013301.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016929080.1
COORDINATES: similar to AA sequence:RefSeq:WP_002888644.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411675.1
COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411673.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411671.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011411672.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020025.2
COORDINATES: similar to AA sequence:RefSeq:WP_013975714.1
GO:0008834 - di-trans,poly-cis-decaprenylcistransferase activity [Evidence IEA]; GO:0002094 - polyprenyltransferase activity [Evidence IEA]
GO:0043164 - Gram-negative-bacterium-type cell wall biogenesis [Evidence IEA]
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_012883666.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019844313.1
GO:0009279 - cell outer membrane [Evidence IEA]
outer membrane protein assembly factor BamA
COORDINATES: similar to AA sequence:RefSeq:WP_002212140.1
COORDINATES: similar to AA sequence:RefSeq:WP_004959243.1
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011282828.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282829.1
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015731009.1
GO:0008915 - lipid-A-disaccharide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_308213.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019455765.1
acetyl-CoA carboxylase carboxyl transferase subunit alpha