Mesorhizobium jarvisii strain ATCC 33669 plasmid pMJ700743b, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Mesorhizobium.
Submitted (02-NOV-2018) Microbiology and Immunology, University of Otago, 720 Cumberland St, Dunedin, Otago 9054, New Zealand
REFSEQ INFORMATION: The reference sequence is identical to\nCP033509.1.\nBacteria and source DNA available from University of Otago,\nDepartment of Microbiology and Immunology, Lab 607.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-OCT-2018\nAssembly Method :: Flye v. 2.3.5; Unicycler v. 0.4.6; SPAdes\n v. 3.12\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 139x; 16x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 15:55:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,128\nCDSs (total) :: 7,066\nGenes (coding) :: 6,889\nCDSs (with protein) :: 6,889\nGenes (RNA) :: 62\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 177\nCDSs (without protein) :: 177\nPseudo Genes (ambiguous residues) :: 0 of 177\nPseudo Genes (frameshifted) :: 100 of 177\nPseudo Genes (incomplete) :: 124 of 177\nPseudo Genes (internal stop) :: 24 of 177\nPseudo Genes (multiple problems) :: 62 of 177\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF014581.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008873007.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018068243.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_005934673.1
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF017868.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007630340.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212934.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_020176965.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012605459.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930485.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
translesion error-prone DNA polymerase V autoproteolytic subunit