Sulfitobacter faviae strain SCSIO W_1865 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Comparative genomic analysis of cold water coral derived Sulfitobacter faviae: insights into their metabolism and habitat adaptation
Submitted (18-JAN-2023) Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Haibin Road, Guangzhou, Guangdong 511458, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP116427.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-SEP-2022\nAssembly Method :: ABySS v. Version: 2.1.5\nAssembly Name :: SCSIO W_1865\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/29/2023 16:33:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,928\nCDSs (total) :: 3,863\nGenes (coding) :: 3,830\nCDSs (with protein) :: 3,830\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 33\nCDSs (without protein) :: 33\nPseudo Genes (ambiguous residues) :: 0 of 33\nPseudo Genes (frameshifted) :: 14 of 33\nPseudo Genes (incomplete) :: 16 of 33\nPseudo Genes (internal stop) :: 9 of 33\nPseudo Genes (multiple problems) :: 6 of 33\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011338080.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011655393.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336138.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012114967.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114966.1
COORDINATES: similar to AA sequence:RefSeq:WP_004434309.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827309.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179468.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819660.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335610.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009574084.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013239773.1
COORDINATES: similar to AA sequence:RefSeq:WP_003178821.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806783.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_018010707.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_009519798.1
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007120616.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179475.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009179414.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120611.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804200.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804201.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120608.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335580.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120605.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120602.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009804208.1
COORDINATES: protein motif:HMM:NF013540.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007120599.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011336943.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046470.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011805342.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827025.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827026.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747348.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007791754.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827030.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006481484.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009804224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120593.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120592.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120589.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574128.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335689.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804229.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335678.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335670.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827040.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804234.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505437.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075038.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009574268.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574267.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820068.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009820067.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859468.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819736.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820064.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179364.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179450.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179384.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015495096.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015494728.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_015496038.1
COORDINATES: similar to AA sequence:RefSeq:WP_018293414.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
quaternary ammonium compound efflux SMR transporter SugE
COORDINATES: similar to AA sequence:RefSeq:WP_011147279.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962061.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120578.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120579.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120580.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011569679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011569680.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_007803284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819590.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335622.1