Desulfotalea psychrophila LSv54 plasmid small, complete sequence.
type: Entry
definition: Desulfotalea psychrophila LSv54 plasmid small, complete sequence.
sequence version: NC_006140.1
sequence date: 2022-11-17
sequence: sequence
division: CON
label: NC_006140.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA3138217
keyword: RefSeq
keyword: complete genome
source: Desulfotalea psychrophila LSv54
organism: Desulfotalea psychrophila LSv54
taxonomy: Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfocapsaceae; Desulfotalea.
reference: 1
references: 15305914
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCR522872.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/17/2022 01:16:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,248\nCDSs (total) :: 3,157\nGenes (coding) :: 3,088\nCDSs (with protein) :: 3,088\nGenes (RNA) :: 91\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 27 of 69\nPseudo Genes (incomplete) :: 40 of 69\nPseudo Genes (internal stop) :: 19 of 69\nPseudo Genes (multiple problems) :: 16 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14664
topology: circular
so has quality: SO_0000988
location: 1..14664
location: region:1-14664:1
RO_0002162: 177439

NC_006140
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA3138217
type: BioSample
SIO_000068: biosample

1
title: The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments
author: Rabus, R.
author: Ruepp, A.
author: Frickey, T.
author: Rattei, T.
author: Fartmann, B.
author: Stark, M.
author: Bauer, M.
author: Zibat, A.
author: Lombardot, T.
author: Becker, I.
author: Amann, J.
author: Gellner, K.
author: Teeling, H.
author: Leuschner, W.D.
author: Glockner, F.O.
author: Lupas, A.N.
author: Amann, R.
author: Klenk, H.P.
journal: Environ Microbiol
volume: 6
issue: 9
pages: 887-902
year: 2004
pubmed: 15305914

15305914
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Klenk, H.P.
journal: Submitted (11-JUN-2004) Klenk H.P., e.gene Biotechnologie GmbH, Poeckinger Fussweg 7a, 82340 Feldafing, Germany Email: hans-peter.klenk@egene-biotech.de

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14664:1
position: 14664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14664:1:source
so part of: sequence
organism: Desulfotalea psychrophila LSv54
mol type: genomic DNA
strain: LSv54
type material: type strain of Desulfotalea psychrophila
plasmid: small
note: small plasmid

177439
type: Taxonomy
SIO_000068: taxonomy

DP_RS18160
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS18160
so part of: sequence
location: complement(join(14088..14664,1..14))
location: region:1-14664:-1
so has part: feature:1-14:-1:exon
so has part: feature:14088-14664:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14664:-1
position: 14664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-14:-1:exon

position:14:-1
position: 14
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14088-14664:-1:exon

position:14088:-1
position: 14088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DP_RS18160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS18160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDILNIVLLSVSGSATLITIAVFLAKKVLGQFLVKDIENHKLSLSQDLEDHKNKLAEIASNKERKILKLEELHCQLIEMNLRIYVKYSNIYTMIEEKISGEQIDKYIASQNLGQEFFIIQSKIKSLSSIYAKHISDKDFSEKVKFLLEENFKFETLYRNSENTPANSLILKKGLEDFVTSSNKYIKAVSDEISRLT
SIO_010081: DP_RS18160
subclass of: SO_0000673
so part of: DP_RS18160
location: complement(join(14088..14664,1..14))
location: region:1-14664:-1
so has part: feature:1-14:-1:exon
so has part: feature:14088-14664:-1:exon

WP_049785177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-14:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14088-14664:-1:exon

DP_RS16305
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16305
old locus tag: DPPA01
so part of: sequence
location: complement(296..1435)
location: region:296-1435:-1
so has part: feature:296-1435:-1:exon
subclass of: SO_0000010

position:296:-1
position: 296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1435:-1
position: 1435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296-1435:-1:exon

DP_RS16305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16305
old locus tag: DPPA01
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011964279.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MNLQELKVNVTDIISDLKNNGNFPKENSHIDYKVDLKLTKSKSSLENFLLNFAKDIISFSNADGGMILLGIKEDKTTGKNDDVGLPSETLEILEQIDLNDVTQKFEKIAKVGVSIDLQKFKISTRLFYYLIIEKNNQILIPQADVPEYKLQKGAIYYRASSKNEHANQSTADFNRFLQIKANERSKEFMEIWSKLLPEMVDINPREVLILNPVQNRVYGFNSRDNILSNSDVEIDKNQNGVFNIILNAISAGEIGKITTNEGKPIYKIVGELSNFKEHITMTSLNKAVKDKVIYNFGNQHLKIAMRYLGWVDDPKFKVNNPPEGTVDNKFEHYIWVESLDNYSKTTKVFFSVGAADEMARVINNESIHKEIFNKLLIKK
SIO_010081: DP_RS16305
subclass of: SO_0000673
so part of: DP_RS16305
location: complement(296..1435)
location: region:296-1435:-1
so has part: feature:296-1435:-1:exon

WP_011190461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296-1435:-1:exon

DP_RS16310
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16310
old locus tag: DPPA02
so part of: sequence
location: 1830..2285
location: region:1830-2285:1
so has part: feature:1830-2285:1:exon
subclass of: SO_0000010

position:1830:1
position: 1830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2285:1
position: 2285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1830-2285:1:exon

DP_RS16310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16310
old locus tag: DPPA02
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MINRLIKKTLITGILLVAVTAVTIYFVYDPGIFKKWPWFRYSLSLSVLTILSAFTYMAWCMLDVIRWDNLFHRGSLGSDFSAVGYGGVIAPILVLLLYPSLSSLGVHSDGSVRTVGFVMAFTHGIGFGYIQTQINNTITEIYKARSEEETL
SIO_010081: DP_RS16310
subclass of: SO_0000673
so part of: DP_RS16310
location: 1830..2285
location: region:1830-2285:1
so has part: feature:1830-2285:1:exon

WP_011190462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1830-2285:1:exon

DP_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16315
old locus tag: DPPA03
so part of: sequence
location: complement(2286..3044)
location: region:2286-3044:-1
so has part: feature:2286-3044:-1:exon
subclass of: SO_0000010

position:2286:-1
position: 2286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3044:-1
position: 3044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2286-3044:-1:exon

DP_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16315
old locus tag: DPPA03
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYQTMHKAIAVRLVKKAHCTSGIRRTSPYSRFSTILNHKKGGGSYVVDKFDANNFSCRSFDGTSWTDDFNITVENLSQYYLYTTYYFEPNFFFKPKETKSLFKIYLLYFTRYPYWFNKIYGILCTKFAYLHLNKEASASERNQLLQFLVRQQVNNGKQKIECDYILQKFYRSHRLGSTGSKLQKKKMDFYLESLKDCKDIQKYETTIKVSGKAINTIDEFNSQKTKSRISMGFQLLTVILAFVTAYLALH
SIO_010081: DP_RS16315
subclass of: SO_0000673
so part of: DP_RS16315
location: complement(2286..3044)
location: region:2286-3044:-1
so has part: feature:2286-3044:-1:exon

WP_011190463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2286-3044:-1:exon

DP_RS16320
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16320
old locus tag: DPPA04
so part of: sequence
location: complement(3161..3691)
location: region:3161-3691:-1
so has part: feature:3161-3691:-1:exon
subclass of: SO_0000010

position:3161:-1
position: 3161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3691:-1
position: 3691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3161-3691:-1:exon

DP_RS16320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16320
old locus tag: DPPA04
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKNEIVEQKGTGEIFTAEELPFPIKLMLDIYNLSTTSENIKKEITLHLNDLATKRNHKASGFRKDENGRLIFDDKLFTESIYKGKIDTYTNVLKNRANKLLKDMEMVQHMGESHSAISMIIDKQLLEQKVCEEISRKAQDQERILKMIPQIFPELKRNAIFINDKKDVKKLNEPK
SIO_010081: DP_RS16320
subclass of: SO_0000673
so part of: DP_RS16320
location: complement(3161..3691)
location: region:3161-3691:-1
so has part: feature:3161-3691:-1:exon

WP_011190464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3161-3691:-1:exon

DP_RS16325
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16325
old locus tag: DPPA05
so part of: sequence
location: complement(3723..5045)
location: region:3723-5045:-1
so has part: feature:3723-5045:-1:exon
subclass of: SO_0000010

position:3723:-1
position: 3723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5045:-1
position: 5045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3723-5045:-1:exon

DP_RS16325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16325
old locus tag: DPPA05
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MVHLPEVYNPHTLVRKSTKMLSKNYCFTEREGKFIDLMIAVSDGNAEDFDSLRFSISQLAEYYKIKPDGAYKAIQEITAGLITKGFQLTTTSEEGAIIVSQSSFLCQADYNKGKGTVDVRFSPIMKKYLLSASLKSYIAYPIGMRNEVVGGNVWRFYEIIRLYSFLGKKTLVIDELKVLMGLTSKYKQPTDFIKYVIEKAMVEIPLKTEMYFSYKTRKLGRKTHFLDLIIIDKDAQAILKMKFNSVSPEHYRDLIGYGISPKKILSMDKSGILDESRVVRNIEYTLSEDEKGKVDTIAAFISSAITGDWAKKSPYKKKKETREKEKDEKDKKSIEEIKAYQKRKDKEKILDEEYSLYCNSQFEKYLDKNIEKFTKQFLDNCHDGIKSTILRKISSLKTIDEYYKTVIFEVQAKLYYRKNILDSSVNTFEKWLLKTKGIKF
SIO_010081: DP_RS16325
subclass of: SO_0000673
so part of: DP_RS16325
location: complement(3723..5045)
location: region:3723-5045:-1
so has part: feature:3723-5045:-1:exon

WP_162096688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3723-5045:-1:exon

DP_RS16335
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16335
old locus tag: DPPA06
so part of: sequence
location: complement(5975..6346)
location: region:5975-6346:-1
so has part: feature:5975-6346:-1:exon
subclass of: SO_0000010

position:5975:-1
position: 5975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6346:-1
position: 6346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5975-6346:-1:exon

DP_RS16335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16335
old locus tag: DPPA06
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFEWFEEQIKRGAKRNANPTVTISKNGGINFNKKALEEYNINESIYIIYGISEDKTSIGFNFVAEKKAGAYKINIKENGASASIKRFLEHKNIVISSSTKFPLHQENDFVCITLTEGETSKK
SIO_010081: DP_RS16335
subclass of: SO_0000673
so part of: DP_RS16335
location: complement(5975..6346)
location: region:5975-6346:-1
so has part: feature:5975-6346:-1:exon

WP_011190466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5975-6346:-1:exon

DP_RS16340
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16340
so part of: sequence
location: complement(6844..7134)
location: region:6844-7134:-1
so has part: feature:6844-7134:-1:exon
subclass of: SO_0000010

position:6844:-1
position: 6844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7134:-1
position: 7134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6844-7134:-1:exon

DP_RS16340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16340
inference: COORDINATES: protein motif:HMM:NF024554.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toprim domain-containing protein
translation: MDFLSFLTDKKESVLEYVNSVIIMCSVSMAKKTIEKIFCICLETNIKSIYTLLDNDKTGKKTTKFFKDNLKNLVVDDKSYIYAKFNDYNDFLQKRK
SIO_010081: DP_RS16340
subclass of: SO_0000673
so part of: DP_RS16340
location: complement(6844..7134)
location: region:6844-7134:-1
so has part: feature:6844-7134:-1:exon

WP_083819028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6844-7134:-1:exon

DP_RS17760
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS17760
old locus tag: DPPA08
so part of: sequence
location: complement(7471..7737)
location: region:7471-7737:-1
so has part: feature:7471-7737:-1:exon
subclass of: SO_0000010

position:7471:-1
position: 7471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7737:-1
position: 7737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7471-7737:-1:exon

DP_RS17760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS17760
old locus tag: DPPA08
inference: COORDINATES: protein motif:HMM:NF013930.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CHC2 zinc finger domain-containing protein
translation: MKCEQAKNIKLDLVLNKLGYAPQKYLNSQNSIKYFSPFREEKTPSFDYSPLKNAWFDHGTGEGGNTLDFIIGFQKCSVSQALNFLENI
SIO_010081: DP_RS17760
subclass of: SO_0000673
so part of: DP_RS17760
location: complement(7471..7737)
location: region:7471-7737:-1
so has part: feature:7471-7737:-1:exon

WP_011190468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7471-7737:-1:exon

DP_RS16345
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16345
old locus tag: DPPA09
so part of: sequence
location: 7907..8449
location: region:7907-8449:1
so has part: feature:7907-8449:1:exon
subclass of: SO_0000010

position:7907:1
position: 7907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8449:1
position: 8449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7907-8449:1:exon

DP_RS16345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16345
old locus tag: DPPA09
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFNTLMVCFFSSVCFFLVLPFNASAEDLLNIRQYTNKNKPETLGEFTIEKEKETNLAYITSATNKASFLLFEKEIKRPFEIKFQKYSLENFAINIISEKKEIKISYNQWLYVNKKRVEDCSLRIARWNTLRIKVKEDKLVFYINGEKSYTLPSVDNNIVEEILFKFGDTTKISKLEIKK
SIO_010081: DP_RS16345
subclass of: SO_0000673
so part of: DP_RS16345
location: 7907..8449
location: region:7907-8449:1
so has part: feature:7907-8449:1:exon

WP_011190469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7907-8449:1:exon

DP_RS16350
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16350
old locus tag: DPPA10
so part of: sequence
location: 9113..9481
location: region:9113-9481:1
so has part: feature:9113-9481:1:exon
subclass of: SO_0000010

position:9113:1
position: 9113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9481:1
position: 9481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9113-9481:1:exon

DP_RS16350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16350
old locus tag: DPPA10
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRKKYLQEYQKEYRKEKKQVTLTLTLTEYNYFKTIADKEDIKVTSLIKAMALSQLGKTFYFPKEILKRIDEFIFIIRNIANNLNQIARHSNIIKNVINENSVLSLIKNLETEVKRFIKSKI
SIO_010081: DP_RS16350
subclass of: SO_0000673
so part of: DP_RS16350
location: 9113..9481
location: region:9113-9481:1
so has part: feature:9113-9481:1:exon

WP_011190470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9113-9481:1:exon

DP_RS16355
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16355
old locus tag: DPPA11
so part of: sequence
location: 9478..10398
location: region:9478-10398:1
so has part: feature:9478-10398:1:exon
subclass of: SO_0000010

position:9478:1
position: 9478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10398:1
position: 10398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9478-10398:1:exon

DP_RS16355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16355
old locus tag: DPPA11
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIKSLSRKKPTFGQLSDYIYNEADKEYIYTYNMYSDKNKLKDIKKEFKENYSFLKKQKNSNALYHEMLSIKKSNIEIDLQKKALYDIVNEYIKVRSPNCLVYGGLHEAENNLHYHVIISSNQIEKEKNNYLSKKEFSEIKKGLEMYVLNKYPELKQEIIINKEKKKNTISDKEYQLGKRTGRQTKSENLKERLNNIFNNAKTKKEFFDALYWEKIEIQLKGKTIKFIDEKTGLTRRLKRLGLEEEFYKLSDSLEQQEAKYQEGKQTHEQQQAHEQQQAHEQQEQTKNTESAEELKKNKEIKEKNF
SIO_010081: DP_RS16355
subclass of: SO_0000673
so part of: DP_RS16355
location: 9478..10398
location: region:9478-10398:1
so has part: feature:9478-10398:1:exon

WP_011190471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9478-10398:1:exon

DP_RS16360
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16360
so part of: sequence
location: 10459..10671
location: region:10459-10671:1
so has part: feature:10459-10671:1:exon
subclass of: SO_0000010

position:10459:1
position: 10459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10671:1
position: 10671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10459-10671:1:exon

DP_RS16360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGFLSFLDSFMSLISILDNKNDVSDDKEDTNKSETKPVNESKKNELIAERKSEFSKVEKKEKEKDKSRQR
SIO_010081: DP_RS16360
subclass of: SO_0000673
so part of: DP_RS16360
location: 10459..10671
location: region:10459-10671:1
so has part: feature:10459-10671:1:exon

WP_041279091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10459-10671:1:exon

DP_RS16365
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16365
old locus tag: DPPA12
so part of: sequence
location: 10683..10988
location: region:10683-10988:1
so has part: feature:10683-10988:1:exon
subclass of: SO_0000010

position:10683:1
position: 10683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10988:1
position: 10988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10683-10988:1:exon

DP_RS16365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16365
old locus tag: DPPA12
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDFLGLFDGFMSFFSLTKDSSTKIDNGNNRCGNCKKNNYKKPTYEAKTIDKKQKNDLLEKQKNARIKREMDIVKRKADFYSTKQPNMTIKDNVVTYDFKN
SIO_010081: DP_RS16365
subclass of: SO_0000673
so part of: DP_RS16365
location: 10683..10988
location: region:10683-10988:1
so has part: feature:10683-10988:1:exon

WP_011190472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10683-10988:1:exon

DP_RS16370
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16370
old locus tag: DPPA13
so part of: sequence
location: 11000..12466
location: region:11000-12466:1
so has part: feature:11000-12466:1:exon
subclass of: SO_0000010

position:11000:1
position: 11000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12466:1
position: 12466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11000-12466:1:exon

DP_RS16370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16370
old locus tag: DPPA13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009669090.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MSKLIADTLKTFFNVGKFIAKGYVLKKEEGARFAKNSEQNEIINSSNRGLLINGINKRLSEKESFKHIAIIAKSGIGKTTGYIYPNIFDKADSNCSMLITDPSSEIYETTSQHLKNRGFKIVRLNPSNINQSSRFNPFHGLGAEDIIEIEQICTSIIKSKYGNDKEQVWNDGAISLLELFAKCLAYTQPEYLNLPNLNYLIQMFGESGENLDDWVIEHSINPYDEQDRSILDFWIGLRSNNANMLTSYATIVKTALKQLNNRKIQRLLSNNDIDLEDFRKQKTAIFLSFPDNQQDYYQFLVDIFYARFFSVMMSKKPTPRDLNVYCFLDEFGNAYVDNFPTIVTTIRKYRVSLSVVLQGISQLNKKYGDMAKSGISSFIIYAGGDYETLNEQSQLIGKKRIIQRNKFEDHVTSYQDIDLLPPAELRTMKDNQALFLSSNKYPFIFEFQPFYKNRKFLTLSKKGEYIPLEKQKDMCWNQLFLKKNNKNK
SIO_010081: DP_RS16370
subclass of: SO_0000673
so part of: DP_RS16370
location: 11000..12466
location: region:11000-12466:1
so has part: feature:11000-12466:1:exon

WP_011190473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11000-12466:1:exon

DP_RS16375
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16375
old locus tag: DPPA14
so part of: sequence
location: 12504..13127
location: region:12504-13127:1
so has part: feature:12504-13127:1:exon
subclass of: SO_0000010

position:12504:1
position: 12504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13127:1
position: 13127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12504-13127:1:exon

DP_RS16375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16375
old locus tag: DPPA14
inference: COORDINATES: protein motif:HMM:NF012451.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: J domain-containing protein
translation: MALNVFDSVLLSFVYALITWVCFYSIKKLHWLLKIVPIIFLTSVIGHSPSFGARIMIISFLIMVARELYIKNNCYFLYEIFSNATDFLKNKKNKRKEEENFNSERKSNNENIKEELSQAKERLKKVREEADHQKANHQKAASKPPRERLNIFSEPLTHAELKKAYRLASLKCHPDHVEHLSETLKETANEEFKKLNEAYNKLKKVAQ
SIO_010081: DP_RS16375
subclass of: SO_0000673
so part of: DP_RS16375
location: 12504..13127
location: region:12504-13127:1
so has part: feature:12504-13127:1:exon

WP_011190474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12504-13127:1:exon

DP_RS16380
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16380
old locus tag: DPPA15
so part of: sequence
location: 13241..13837
location: region:13241-13837:1
so has part: feature:13241-13837:1:exon
subclass of: SO_0000010

position:13241:1
position: 13241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13837:1
position: 13837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13241-13837:1:exon

DP_RS16380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16380
old locus tag: DPPA15
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTLFWTFKGGQGKTTLAVSYALYSDSYFITNDTESGTLDIYGGLFSSDKMESLGRGEDLVLRERNEVYDLGGWSDSLAEKVASNCEICVIPVSFNSISEITPSIKAINSLSIYNKSIVLVINNTDKKEAVEAKKYFEKEYPKIKVFIVNKSKYIHRLANENKTVFEIAEQNGLTRYNTKQLRNQLTTLFDYIKNYDN
SIO_010081: DP_RS16380
subclass of: SO_0000673
so part of: DP_RS16380
location: 13241..13837
location: region:13241-13837:1
so has part: feature:13241-13837:1:exon

WP_041279094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13241-13837:1:exon

DP_RS16385
type: Gene
subclass of: SO_0000704
RO_0002162: 177439
locus tag: DP_RS16385
old locus tag: DPPA16
so part of: sequence
location: 13827..14069
location: region:13827-14069:1
so has part: feature:13827-14069:1:exon
subclass of: SO_0000010

position:13827:1
position: 13827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14069:1
position: 14069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13827-14069:1:exon

DP_RS16385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 177439
locus tag: DP_RS16385
old locus tag: DPPA16
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTKKSTFDKLANKSKTIANSNPVDIQKSELIESVVKREKKNKQVQFYLTETEYNKLINTMKPMEKLSDKVRQIVIKSLT
SIO_010081: DP_RS16385
subclass of: SO_0000673
so part of: DP_RS16385
location: 13827..14069
location: region:13827-14069:1
so has part: feature:13827-14069:1:exon

WP_011190476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13827-14069:1:exon