Desulfotalea psychrophila LSv54 plasmid small, complete sequence.
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfocapsaceae; Desulfotalea.
The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments
Submitted (11-JUN-2004) Klenk H.P., e.gene Biotechnologie GmbH, Poeckinger Fussweg 7a, 82340 Feldafing, Germany Email: hans-peter.klenk@egene-biotech.de
REFSEQ INFORMATION: The reference sequence is identical to\nCR522872.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/17/2022 01:16:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,248\nCDSs (total) :: 3,157\nGenes (coding) :: 3,088\nCDSs (with protein) :: 3,088\nGenes (RNA) :: 91\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 27 of 69\nPseudo Genes (incomplete) :: 40 of 69\nPseudo Genes (internal stop) :: 19 of 69\nPseudo Genes (multiple problems) :: 16 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Desulfotalea psychrophila
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011964279.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF013930.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009669090.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012451.2