Paenibacillus crassostreae strain LPB0068 plasmid pPC02, complete sequence.
type: Entry
definition: Paenibacillus crassostreae strain LPB0068 plasmid pPC02, complete sequence.
sequence version: NZ_CP017772.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP017772.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05933025
keyword: RefSeq
source: Paenibacillus crassostreae
organism: Paenibacillus crassostreae
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP017772.1.\nBacteria and source DNA available from Korean Agricultural Culture\nCollection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.86x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:20:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,507\nCDSs (total) :: 4,383\nGenes (coding) :: 4,308\nCDSs (with protein) :: 4,308\nGenes (RNA) :: 124\nrRNAs :: 10, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 29 of 75\nPseudo Genes (incomplete) :: 51 of 75\nPseudo Genes (internal stop) :: 15 of 75\nPseudo Genes (multiple problems) :: 17 of 75\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20893
topology: circular
so has quality: SO_0000988
location: 1..20893
location: region:1-20893:1
RO_0002162: 1763538

NZ_CP017772
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05933025
type: BioSample
SIO_000068: biosample

1
title: Paenibacillus sp. LPB0068 isolated from Crassostrea gigas
author: Shin, S.-K.
author: Yi, H.
journal: Unpublished

2
title: Direct Submission
author: Shin, S.-K.
author: Yi, H.
journal: Submitted (21-OCT-2016) Public Health Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20893:1
position: 20893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20893:1:source
so part of: sequence
organism: Paenibacillus crassostreae
mol type: genomic DNA
strain: LPB0068
isolation source: Crassostrea gigas
type material: type strain of Paenibacillus crassostreae
plasmid: pPC02
country: South Korea
collection date: 2015-02-27

1763538
type: Taxonomy
SIO_000068: taxonomy

LPB68_RS21535
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21535
old locus tag: LPB68_21535
so part of: sequence
location: 150..713
location: region:150-713:1
so has part: feature:150-713:1:exon
subclass of: SO_0000010

position:150:1
position: 150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:713:1
position: 713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150-713:1:exon

LPB68_RS21535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21535
old locus tag: LPB68_21535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDFKRTYSLVDVSERIGRPRTTLADWARQFKRVSADSWIRADNALHGGSGRVIRIHIENEDANEHPDSIREQLRGVVREIIVPMTNDDDGKPYLMQLAGEIDQLKRAVVMLAEQNDGLRRELDEARREAATGTEQLSGRISDVQNSLGDEIRKGQEQTSAQLGEILSRVDTYGKQPRGLLRWFSKGN
SIO_010081: LPB68_RS21535
subclass of: SO_0000673
so part of: LPB68_RS21535
location: 150..713
location: region:150-713:1
so has part: feature:150-713:1:exon

WP_071193223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150-713:1:exon

LPB68_RS21540
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21540
old locus tag: LPB68_21540
so part of: sequence
location: 738..947
location: region:738-947:1
so has part: feature:738-947:1:exon
subclass of: SO_0000010

position:738:1
position: 738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:947:1
position: 947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:738-947:1:exon

LPB68_RS21540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21540
old locus tag: LPB68_21540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMLPVEGLKVVKDVCNIGSWSKSGQTSRSRVTGAVIVVTGAVATRILKSKKVTLKAKFGKAKASAVFED
SIO_010081: LPB68_RS21540
subclass of: SO_0000673
so part of: LPB68_RS21540
location: 738..947
location: region:738-947:1
so has part: feature:738-947:1:exon

WP_157891924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:738-947:1:exon

LPB68_RS21545
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21545
old locus tag: LPB68_21545
pseudo: true
so part of: sequence
location: complement(1241..2194)
location: region:1241-2194:-1
so has part: feature:1241-2194:-1:exon
subclass of: SO_0000010

position:1241:-1
position: 1241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2194:-1
position: 2194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1241-2194:-1:exon

LPB68_RS21545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21545
old locus tag: LPB68_21545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008635024.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: proline dehydrogenase family protein
SIO_010081: LPB68_RS21545
subclass of: SO_0000673
so part of: LPB68_RS21545
location: complement(1241..2194)
location: region:1241-2194:-1
so has part: feature:1241-2194:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1241-2194:-1:exon

LPB68_RS22490
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS22490
old locus tag: LPB68_21550
pseudo: true
so part of: sequence
location: complement(2281..3091)
location: region:2281-3091:-1
so has part: feature:2281-3091:-1:exon
subclass of: SO_0000010

position:2281:-1
position: 2281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3091:-1
position: 3091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2281-3091:-1:exon

LPB68_RS22490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS22490
old locus tag: LPB68_21550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019467708.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: AAA family ATPase
SIO_010081: LPB68_RS22490
subclass of: SO_0000673
so part of: LPB68_RS22490
location: complement(2281..3091)
location: region:2281-3091:-1
so has part: feature:2281-3091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2281-3091:-1:exon

LPB68_RS21555
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21555
old locus tag: LPB68_21555
pseudo: true
so part of: sequence
location: complement(3084..4522)
location: region:3084-4522:-1
so has part: feature:3084-4522:-1:exon
subclass of: SO_0000010

position:3084:-1
position: 3084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4522:-1
position: 4522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3084-4522:-1:exon

LPB68_RS21555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21555
old locus tag: LPB68_21555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001178744.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Mu transposase C-terminal domain-containing protein
SIO_010081: LPB68_RS21555
subclass of: SO_0000673
so part of: LPB68_RS21555
location: complement(3084..4522)
location: region:3084-4522:-1
so has part: feature:3084-4522:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3084-4522:-1:exon

LPB68_RS21560
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21560
old locus tag: LPB68_21560
pseudo: true
so part of: sequence
location: complement(4545..5095)
location: region:4545-5095:-1
so has part: feature:4545-5095:-1:exon
subclass of: SO_0000010

position:4545:-1
position: 4545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5095:-1
position: 5095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4545-5095:-1:exon

LPB68_RS21560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21560
old locus tag: LPB68_21560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016122973.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LPB68_RS21560
subclass of: SO_0000673
so part of: LPB68_RS21560
location: complement(4545..5095)
location: region:4545-5095:-1
so has part: feature:4545-5095:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4545-5095:-1:exon

LPB68_RS23545
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23545
so part of: sequence
location: complement(5536..6105)
location: region:5536-6105:-1
so has part: feature:5536-6105:-1:exon
subclass of: SO_0000010

position:5536:-1
position: 5536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6105:-1
position: 6105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5536-6105:-1:exon

LPB68_RS23545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRVPANVKGDGKHTIEELVIEKNRDPLRGRDHRTPLEIIQLGELENLMLKGQGYRADSIPKVDEIIYLRENSNVSTGGDSIDVTDEISDYKKIAVDAVSALGAKISGIDLIIENKDVPAANNNAYGIIEANFNPSMYMHTSIQRKVSTFDYAYNTLFIPRTTTKSGINVSQIRGAISKMQIYNVKFGV
SIO_010081: LPB68_RS23545
subclass of: SO_0000673
so part of: LPB68_RS23545
location: complement(5536..6105)
location: region:5536-6105:-1
so has part: feature:5536-6105:-1:exon

WP_237087924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5536-6105:-1:exon

LPB68_RS23550
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23550
so part of: sequence
location: complement(6483..6722)
location: region:6483-6722:-1
so has part: feature:6483-6722:-1:exon
subclass of: SO_0000010

position:6483:-1
position: 6483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6722:-1
position: 6722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6483-6722:-1:exon

LPB68_RS23550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDPSKTLAGRLYKESEKSSQGQVATSIAKENYKKLWDKPYQLTGFTDMELSTQILMFDAIQQGIQVEVLDRQDQFLKLN
SIO_010081: LPB68_RS23550
subclass of: SO_0000673
so part of: LPB68_RS23550
location: complement(6483..6722)
location: region:6483-6722:-1
so has part: feature:6483-6722:-1:exon

WP_237087925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6483-6722:-1:exon

LPB68_RS23625
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23625
so part of: sequence
location: complement(6858..7583)
location: region:6858-7583:-1
so has part: feature:6858-7583:-1:exon
subclass of: SO_0000010

position:6858:-1
position: 6858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7583:-1
position: 7583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6858-7583:-1:exon

LPB68_RS23625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23625
inference: COORDINATES: protein motif:HMM:NF016174.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNNEMLWPLSMPPQLPEKEENIMIAKLKSVENVLYRQTLSNSYGRRKQMICGVHFNFEFGDELIQALFNTQSEIKDYRHFKTEIYLKATRNYLHYRWLFTYFYGASPSSEKNFFEEDSLNEAVRSIRNSKYGYTNSDDVQVSYSSIQNYLSDLSSMVKEGFYQKKKNFIHLSFKRRTSCFRSSDHGIRYIELRNIDLNPFEPYGIGYEQAEFLHLFLIYLLWKDEGENCDEWVKMGDFYK
SIO_010081: LPB68_RS23625
subclass of: SO_0000673
so part of: LPB68_RS23625
location: complement(6858..7583)
location: region:6858-7583:-1
so has part: feature:6858-7583:-1:exon

WP_250637632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6858-7583:-1:exon

LPB68_RS23630
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23630
so part of: sequence
location: complement(7621..7851)
location: region:7621-7851:-1
so has part: feature:7621-7851:-1:exon
subclass of: SO_0000010

position:7621:-1
position: 7621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7851:-1
position: 7851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7621-7851:-1:exon

LPB68_RS23630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23630
inference: COORDINATES: protein motif:HMM:NF016174.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDIKKMLVNDRVKPYLLKARYGIEKESKRVDLSGNLAKTDHPKSISMRDDHPYIQRDFSELQMEIITPVTETLGTV
SIO_010081: LPB68_RS23630
subclass of: SO_0000673
so part of: LPB68_RS23630
location: complement(7621..7851)
location: region:7621-7851:-1
so has part: feature:7621-7851:-1:exon

WP_250637633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7621-7851:-1:exon

LPB68_RS21570
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
gene: fghA
locus tag: LPB68_RS21570
old locus tag: LPB68_21570
so part of: sequence
location: complement(7960..8790)
location: region:7960-8790:-1
so has part: feature:7960-8790:-1:exon
subclass of: SO_0000010

position:7960:-1
position: 7960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8790:-1
position: 8790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7960-8790:-1:exon

LPB68_RS21570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
gene: fghA
locus tag: LPB68_RS21570
old locus tag: LPB68_21570
EC number: 3.1.2.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002144139.1
GO function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO process: GO:0046292 - formaldehyde metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-formylglutathione hydrolase
translation: MSLKLIEKHSSFDGLQYKYSHYSEVLQCDLTFSIYLPSNKEKKEIPLIWWLSGLTCTDDNFSQKSGFQRLAEKYQVAVIIPDTSPRGENVADDDAYDLGQGAGFYLNATQNPWAKNYKMYTYITDELSGIASTLVPNFSGKESMGHSMGGHGALVIGMKNAARFKAISAFSPILNPSQVPWGIKAFSSYLGEDKANWKEWDASELIKETGVPPILISQGTADTFYPEQLEETTFLENARKNNQTVNYEKMEGYDHSYFFISTFLEDHFAFHVKQLR
SIO_010081: LPB68_RS21570
subclass of: SO_0000673
so part of: LPB68_RS21570
location: complement(7960..8790)
location: region:7960-8790:-1
so has part: feature:7960-8790:-1:exon

WP_071193225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7960-8790:-1:exon

LPB68_RS22495
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS22495
pseudo: true
so part of: sequence
location: 9158..9483
location: region:9158-9483:1
so has part: feature:9158-9483:1:exon
subclass of: SO_0000010

position:9158:1
position: 9158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9483:1
position: 9483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9158-9483:1:exon

LPB68_RS22495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS22495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008428659.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LPB68_RS22495
subclass of: SO_0000673
so part of: LPB68_RS22495
location: 9158..9483
location: region:9158-9483:1
so has part: feature:9158-9483:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9158-9483:1:exon

LPB68_RS21575
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21575
old locus tag: LPB68_21575
pseudo: true
so part of: sequence
location: 9842..10938
location: region:9842-10938:1
so has part: feature:9842-10938:1:exon
subclass of: SO_0000010

position:9842:1
position: 9842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10938:1
position: 10938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9842-10938:1:exon

LPB68_RS21575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21575
old locus tag: LPB68_21575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003074826.1
GO function: GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO process: GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
SIO_010081: LPB68_RS21575
subclass of: SO_0000673
so part of: LPB68_RS21575
location: 9842..10938
location: region:9842-10938:1
so has part: feature:9842-10938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9842-10938:1:exon

LPB68_RS21580
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
gene: gfa
locus tag: LPB68_RS21580
old locus tag: LPB68_21580
pseudo: true
so part of: sequence
location: 10935..11515
location: region:10935-11515:1
so has part: feature:10935-11515:1:exon
subclass of: SO_0000010

position:10935:1
position: 10935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11515:1
position: 11515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10935-11515:1:exon

LPB68_RS21580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
gene: gfa
locus tag: LPB68_RS21580
old locus tag: LPB68_21580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000214001.1
GO function: GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO process: GO:0046292 - formaldehyde metabolic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S-(hydroxymethyl)glutathione synthase
SIO_010081: LPB68_RS21580
subclass of: SO_0000673
so part of: LPB68_RS21580
location: 10935..11515
location: region:10935-11515:1
so has part: feature:10935-11515:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10935-11515:1:exon

LPB68_RS21585
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21585
old locus tag: LPB68_21585
so part of: sequence
location: 12623..12997
location: region:12623-12997:1
so has part: feature:12623-12997:1:exon
subclass of: SO_0000010

position:12623:1
position: 12623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12997:1
position: 12997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12623-12997:1:exon

LPB68_RS21585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21585
old locus tag: LPB68_21585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000105161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKGISVSQSSANIVLQQKLDPAKQYTFQEIKDVLATEFNGINDNQCSGLIHRSHSKTDGVLVKSDKYYQLRATATTTNNGLEEAKSILKDALREIELIPNKQIKTAEQFNELIELKRKLNELIK
SIO_010081: LPB68_RS21585
subclass of: SO_0000673
so part of: LPB68_RS21585
location: 12623..12997
location: region:12623-12997:1
so has part: feature:12623-12997:1:exon

WP_068658755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12623-12997:1:exon

LPB68_RS21590
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21590
old locus tag: LPB68_21590
so part of: sequence
location: 13241..13495
location: region:13241-13495:1
so has part: feature:13241-13495:1:exon
subclass of: SO_0000010

position:13241:1
position: 13241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13495:1
position: 13495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13241-13495:1:exon

LPB68_RS21590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21590
old locus tag: LPB68_21590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVQNVQEGISSLSDLITRKGDTSELQLKAFLCNNLGRNTLLAKVPMYEFYRMSEVANERSEDGTPVAQPITKPLRSWLVISSKD
SIO_010081: LPB68_RS21590
subclass of: SO_0000673
so part of: LPB68_RS21590
location: 13241..13495
location: region:13241-13495:1
so has part: feature:13241-13495:1:exon

WP_071193226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13241-13495:1:exon

LPB68_RS23635
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23635
old locus tag: LPB68_21595
so part of: sequence
location: 13538..13897
location: region:13538-13897:1
so has part: feature:13538-13897:1:exon
subclass of: SO_0000010

position:13538:1
position: 13538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13897:1
position: 13897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13538-13897:1:exon

LPB68_RS23635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23635
old locus tag: LPB68_21595
inference: COORDINATES: protein motif:HMM:NF025438.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA sulfur modification protein DndB
translation: MKARKRLQELVGKQPYLALQPIVANLRTAGRNGSNLRAQQLETADREGMGIRVWLGQKDIMWVVDGQHRRKAIQMVIEFLEEIRIDQKYPLRSNLYFRITVMNVLFHMTNWLYGSNVMS
SIO_010081: LPB68_RS23635
subclass of: SO_0000673
so part of: LPB68_RS23635
location: 13538..13897
location: region:13538-13897:1
so has part: feature:13538-13897:1:exon

WP_071193227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13538-13897:1:exon

LPB68_RS23640
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23640
old locus tag: LPB68_21600
so part of: sequence
location: 13921..14325
location: region:13921-14325:1
so has part: feature:13921-14325:1:exon
subclass of: SO_0000010

position:13921:1
position: 13921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14325:1
position: 14325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13921-14325:1:exon

LPB68_RS23640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23640
old locus tag: LPB68_21600
inference: COORDINATES: protein motif:HMM:NF025438.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA sulfur modification protein DndB
translation: MDIHLGLNIIEERQLFHDLNNLAKKVEKSLALEFDSSNAVNAFIKDELIDGGLINVSMGDKLDWEDDDGSFSRKDLVAVNAHLILNKSNINSAAPAIVQPRLPIARRYWQSVAQIPGFGEMGLGGLQFLPNLFF
SIO_010081: LPB68_RS23640
subclass of: SO_0000673
so part of: LPB68_RS23640
location: 13921..14325
location: region:13921-14325:1
so has part: feature:13921-14325:1:exon

WP_071193228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13921-14325:1:exon

LPB68_RS23645
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS23645
old locus tag: LPB68_21605
so part of: sequence
location: 14244..14666
location: region:14244-14666:1
so has part: feature:14244-14666:1:exon
subclass of: SO_0000010

position:14244:1
position: 14244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14666:1
position: 14666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14244-14666:1:exon

LPB68_RS23645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS23645
old locus tag: LPB68_21605
inference: COORDINATES: protein motif:HMM:NF025438.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA sulfur modification protein DndB
translation: MAISSSNSWIRRNGARRLTVSAQSVLLKAIAKLTYDFAFGRQADINLLDKLLDGITDMDFSHDNPMWRYYQLTEDELKRYGLDSLTEYLPDNATGNRDVGNFDSETGWMRFGAKHNDIYPIIGDMIRWKLRLPNRHESRL
SIO_010081: LPB68_RS23645
subclass of: SO_0000673
so part of: LPB68_RS23645
location: 14244..14666
location: region:14244-14666:1
so has part: feature:14244-14666:1:exon

WP_083386545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14244-14666:1:exon

LPB68_RS21610
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21610
old locus tag: LPB68_21610
so part of: sequence
location: 15082..15492
location: region:15082-15492:1
so has part: feature:15082-15492:1:exon
subclass of: SO_0000010

position:15082:1
position: 15082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15492:1
position: 15492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15082-15492:1:exon

LPB68_RS21610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21610
old locus tag: LPB68_21610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTIPTLTVTNPIDIHWSHVGCTVLSSSKYGLEYDRIKVLHEIGLNAPLAQDESFYAPPANRAIDVRALFPDGNIVSFVGQRYSDLQDELQKYSQAVADGNVEELNRLHHLFLSTTMLSPVLFKAGTKYLHSNMN
SIO_010081: LPB68_RS21610
subclass of: SO_0000673
so part of: LPB68_RS21610
location: 15082..15492
location: region:15082-15492:1
so has part: feature:15082-15492:1:exon

WP_071193230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15082-15492:1:exon

LPB68_RS21615
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21615
old locus tag: LPB68_21615
so part of: sequence
location: 15548..15790
location: region:15548-15790:1
so has part: feature:15548-15790:1:exon
subclass of: SO_0000010

position:15548:1
position: 15548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15790:1
position: 15790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15548-15790:1:exon

LPB68_RS21615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21615
old locus tag: LPB68_21615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSFRPAGQSQITVRIDLPSSNNLAFNADVIEAAGYEFDPATGAVTGEVQKIIEGDYGLRKIIVWNWQVDPFFRVHYRYR
SIO_010081: LPB68_RS21615
subclass of: SO_0000673
so part of: LPB68_RS21615
location: 15548..15790
location: region:15548-15790:1
so has part: feature:15548-15790:1:exon

WP_162274321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15548-15790:1:exon

LPB68_RS21620
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21620
old locus tag: LPB68_21620
so part of: sequence
location: 16536..17246
location: region:16536-17246:1
so has part: feature:16536-17246:1:exon
subclass of: SO_0000010

position:16536:1
position: 16536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17246:1
position: 17246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16536-17246:1:exon

LPB68_RS21620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21620
old locus tag: LPB68_21620
inference: COORDINATES: protein motif:HMM:NF037419.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PBECR4 domain-containing protein
translation: MKNNSIPIPQGDDLCRCHLYILKLRGSALMFIRVDSLFRGNIMSLSVQDLLTLKELPSEDDLTLQLLAFFYEEHICHQIFHYKIRDKRRDIQLRFKTIDLPHLLGIHKIKTGSGYRGKRGFPELKNGNITLDLLKSANIGGYESTIHRILHFPFLYQLIHAPTFIIFNPHIARSMIDAEFMLYNRYSGRYIHLGIKKEASTDLYTPVTFLERKNVYNGMKIVPVDEIIIIPEKKDT
SIO_010081: LPB68_RS21620
subclass of: SO_0000673
so part of: LPB68_RS21620
location: 16536..17246
location: region:16536-17246:1
so has part: feature:16536-17246:1:exon

WP_157756202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16536-17246:1:exon

LPB68_RS21625
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21625
old locus tag: LPB68_21625
so part of: sequence
location: 18531..19448
location: region:18531-19448:1
so has part: feature:18531-19448:1:exon
subclass of: SO_0000010

position:18531:1
position: 18531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19448:1
position: 19448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18531-19448:1:exon

LPB68_RS21625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21625
old locus tag: LPB68_21625
inference: COORDINATES: protein motif:HMM:NF024244.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MGKSPCEVQVDKFFKHTRANSFATRDRYKDDCQQFSRFCSEKFKLQNIRNMNDKHVAAFIKDAQQKGLAPKTIKNKLSSLRYLHDLLDKPRYQLSDNKQLQLQHGIKLAKTPQVNGDRSWTNEEYSRMKEISRDLGNSNVADCMTLARTMGLRVTEAAAISRAQAEYAIRTGVYQVKGESKNGKHRQVPISPEGKAIFERRLVVTDRGNRLFIRTGERTHQVVNQMQKFVEYHRDKVKTVEGTETRLDKRDGSTRELTFHGLRYGYVQDRMREEVDRGFSRDQAALIVSKEVGHERGDVIKIYEG
SIO_010081: LPB68_RS21625
subclass of: SO_0000673
so part of: LPB68_RS21625
location: 18531..19448
location: region:18531-19448:1
so has part: feature:18531-19448:1:exon

WP_068658776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18531-19448:1:exon

LPB68_RS21630
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21630
old locus tag: LPB68_21630
so part of: sequence
location: 19750..20568
location: region:19750-20568:1
so has part: feature:19750-20568:1:exon
subclass of: SO_0000010

position:19750:1
position: 19750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20568:1
position: 20568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19750-20568:1:exon

LPB68_RS21630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21630
old locus tag: LPB68_21630
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSNERIEYIQDDGQLRVFIVPVDIMDVPDLSIYEQMVYMVLRSYVNPTDPTAFPSYPTIAKRGRMSRSSAIRAVEGLVQKGLITKELRLDVSKNRKIKNTSNLYTLIMPKKLKDNKGSVSQTRGVVSHRHGGSVSQTPNHNHLKEPLLNKIDCMNTHKELDSSSESIQNELYESLNKYIPKYFYIEGIPVGLEYIDEIFLMLITQFSDHLDPEIVEIAAKRYFDRTAKIALGTPNGVEMTLEVREPVALFQICYKESIALYKAKYNHATRRP
SIO_010081: LPB68_RS21630
subclass of: SO_0000673
so part of: LPB68_RS21630
location: 19750..20568
location: region:19750-20568:1
so has part: feature:19750-20568:1:exon

WP_068658774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19750-20568:1:exon