Paenibacillus crassostreae strain LPB0068 plasmid pPC01, complete sequence.
type: Entry
definition: Paenibacillus crassostreae strain LPB0068 plasmid pPC01, complete sequence.
sequence version: NZ_CP017771.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP017771.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05933025
keyword: RefSeq
source: Paenibacillus crassostreae
organism: Paenibacillus crassostreae
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP017771.1.\nBacteria and source DNA available from Korean Agricultural Culture\nCollection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.86x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:20:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,507\nCDSs (total) :: 4,383\nGenes (coding) :: 4,308\nCDSs (with protein) :: 4,308\nGenes (RNA) :: 124\nrRNAs :: 10, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 29 of 75\nPseudo Genes (incomplete) :: 51 of 75\nPseudo Genes (internal stop) :: 15 of 75\nPseudo Genes (multiple problems) :: 17 of 75\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21419
topology: circular
so has quality: SO_0000988
location: 1..21419
location: region:1-21419:1
RO_0002162: 1763538

NZ_CP017771
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05933025
type: BioSample
SIO_000068: biosample

1
title: Paenibacillus sp. LPB0068 isolated from Crassostrea gigas
author: Shin, S.-K.
author: Yi, H.
journal: Unpublished

2
title: Direct Submission
author: Shin, S.-K.
author: Yi, H.
journal: Submitted (21-OCT-2016) Public Health Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21419:1
position: 21419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21419:1:source
so part of: sequence
organism: Paenibacillus crassostreae
mol type: genomic DNA
strain: LPB0068
isolation source: Crassostrea gigas
type material: type strain of Paenibacillus crassostreae
plasmid: pPC01
country: South Korea
collection date: 2015-02-27

1763538
type: Taxonomy
SIO_000068: taxonomy

LPB68_RS21435
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21435
old locus tag: LPB68_21435
so part of: sequence
location: join(21419,1..551)
location: region:1-21419:1
so has part: feature:21419-21419:1:exon
so has part: feature:1-551:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:21419-21419:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-551:1:exon

position:551:1
position: 551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LPB68_RS21435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21435
old locus tag: LPB68_21435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016122973.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYARVSTGLQNLDLQSDALTQHGCKRIFHDKISGAKKQRPGLEEALKYARKGDTIVVWRLDRLGRNMQDLIQIVNGLNERGIGFHSLQENLTMDKSNATGQLMFHLFAAFAEFERNLIEERSAAGRAAAKARGRLGGRPEKYGPKDIEMMKALIESGTPIKDVAEKWGVSRTTIYRYLEK
SIO_010081: LPB68_RS21435
subclass of: SO_0000673
so part of: LPB68_RS21435
location: join(21419,1..551)
location: region:1-21419:1
so has part: feature:21419-21419:1:exon
so has part: feature:1-551:1:exon

WP_068658761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21419-21419:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-551:1:exon

LPB68_RS21440
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21440
old locus tag: LPB68_21440
so part of: sequence
location: 574..2022
location: region:574-2022:1
so has part: feature:574-2022:1:exon
subclass of: SO_0000010

position:574:1
position: 574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2022:1
position: 2022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574-2022:1:exon

LPB68_RS21440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21440
old locus tag: LPB68_21440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001178744.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mu transposase C-terminal domain-containing protein
translation: MQNEYPPLTAYSEEQRQAAMVKYKIIAPYLIDEKTLTVITEETGIAKRTLQYWIQDYKQFGLKGLIRKTRSDAGKIHVESEVAVAIEQLILKYRRNSLTSIHRMVCEQCQKKGWQQPSYYQVYKVSQSLSPGLKKLAHDGEKAYENQYDLIHRREASYPNEIWQADHTPLDIIVLNEKGKPERPWLTIILDDYSRAIAGYFLTFQNPSAIHTSLVLHQAIWRKSNPDWQICGIPEIFYTDHGSDFTSNHLEQVAIDLKINLVFSAIGVPRGRGKIERFFLTVNQLFLQDLPGYLGNQTTSSLLTLKELDEKLFNFLIYNYHHRLHGTTKKEPIQSWNNSGFLPNMPESLESLDLLLLNVAKPRKVHSDGIHFQGLRYIDTNLAAYVGETVIIRYDPRDIAEIRVFYQDKYLCTAISPEISDYTVDLKEIVSARNKVRRNLKKQLDSGKTVAEEIALSKQHELGNKTNESNSKKSKLKRYFNE
SIO_010081: LPB68_RS21440
subclass of: SO_0000673
so part of: LPB68_RS21440
location: 574..2022
location: region:574-2022:1
so has part: feature:574-2022:1:exon

WP_068658762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:574-2022:1:exon

LPB68_RS21445
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21445
old locus tag: LPB68_21445
so part of: sequence
location: 2015..2827
location: region:2015-2827:1
so has part: feature:2015-2827:1:exon
subclass of: SO_0000010

position:2015:1
position: 2015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2827:1
position: 2827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2015-2827:1:exon

LPB68_RS21445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21445
old locus tag: LPB68_21445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019467708.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MNKGQKFIETKEFKRFAEFCDACIRYKYIGICYGLPGVGKTLSSRYYSNWDSIEKQIAYKTANNIGLDADEKILEARTIFYTAPAVRATKMTEQINLIGSRMNMVRTMYKVLTKGEEENYTTDAYEDIDLIIVDEIDRLKVQNLEQLRDIYDRNDIAMILIGMPGIEKRLARYPQLYSRIGFAHEFDKLSKDETHHILEYKWEELGLSIKLEDFSDYEAITSIIKITGGNFRLIQRLFTQIERILEINQLETITTEVVEAARDSLVIGIK
SIO_010081: LPB68_RS21445
subclass of: SO_0000673
so part of: LPB68_RS21445
location: 2015..2827
location: region:2015-2827:1
so has part: feature:2015-2827:1:exon

WP_068658764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2015-2827:1:exon

LPB68_RS21450
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21450
old locus tag: LPB68_21450
so part of: sequence
location: 2914..3876
location: region:2914-3876:1
so has part: feature:2914-3876:1:exon
subclass of: SO_0000010

position:2914:1
position: 2914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3876:1
position: 3876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2914-3876:1:exon

LPB68_RS21450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21450
old locus tag: LPB68_21450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006676105.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: proline dehydrogenase family protein
translation: MIFTSEEKQFAVALKSIARNLEIKEYIQQSPELYPLFQRSAKRFVTGESKEDGVAIGNQLINKGYRISLEFIGENTVSREKCIQAKNEFLKLIQECGERGLNTRISFDLSHIGLAVDSELAFQNLLEMAKEAHDNGLSLMISAEESNKTEQVLSVYKRAVARYTNIGVTLQAQLYRSLDDLRELLNYSSAIRLVKGAFQEPSDICIPRSEKLDERYIELVDLCVEAEHTVSIASHDEAIYKQVIEHGYLKNPYVEAEMLYGIRPDLCKQLKVDGLPVRVYLTYGSEWYLYLTHRIAEYPPNIYVAITDMIQGSEDTSVLY
SIO_010081: LPB68_RS21450
subclass of: SO_0000673
so part of: LPB68_RS21450
location: 2914..3876
location: region:2914-3876:1
so has part: feature:2914-3876:1:exon

WP_068658766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2914-3876:1:exon

LPB68_RS21455
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21455
old locus tag: LPB68_21455
so part of: sequence
location: complement(4173..4382)
location: region:4173-4382:-1
so has part: feature:4173-4382:-1:exon
subclass of: SO_0000010

position:4173:-1
position: 4173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4382:-1
position: 4382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4173-4382:-1:exon

LPB68_RS21455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21455
old locus tag: LPB68_21455
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMLPVEGLKVVKDVVTSEAGQKAVKQVGRAVTGAVIVVTGAVATRILKSKKVTLKAKFGKAKASAVFED
SIO_010081: LPB68_RS21455
subclass of: SO_0000673
so part of: LPB68_RS21455
location: complement(4173..4382)
location: region:4173-4382:-1
so has part: feature:4173-4382:-1:exon

WP_157756203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4173-4382:-1:exon

LPB68_RS21460
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21460
old locus tag: LPB68_21460
so part of: sequence
location: complement(4407..4970)
location: region:4407-4970:-1
so has part: feature:4407-4970:-1:exon
subclass of: SO_0000010

position:4407:-1
position: 4407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4970:-1
position: 4970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4407-4970:-1:exon

LPB68_RS21460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21460
old locus tag: LPB68_21460
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MDFKRTYSLVDVSERIGRPRTTLADWARQFKEFLPTVGSGRTMRYTEEAVELFGFISKMKDANEHPDSIREQLRGVVREIIVPMTNDDDGKPYLMQLAGEIDQLKRAVVMLAEQNDGLRRELDEARREAATGTEQLSGRISDVQNSLGDEIRKGQEQTSAQLGEILSRVDTYGKQPRGLLRWFSKGN
SIO_010081: LPB68_RS21460
subclass of: SO_0000673
so part of: LPB68_RS21460
location: complement(4407..4970)
location: region:4407-4970:-1
so has part: feature:4407-4970:-1:exon

WP_068658771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4407-4970:-1:exon

LPB68_RS21465
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21465
old locus tag: LPB68_21465
so part of: sequence
location: complement(5279..5503)
location: region:5279-5503:-1
so has part: feature:5279-5503:-1:exon
subclass of: SO_0000010

position:5279:-1
position: 5279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5503:-1
position: 5503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5279-5503:-1:exon

LPB68_RS21465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21465
old locus tag: LPB68_21465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGALSGVALVFLLELINVDSLKLIKVMPLISWASALAFALNGLRARKRGWIKLMRLNYWLGSSLVIIGYGWMLI
SIO_010081: LPB68_RS21465
subclass of: SO_0000673
so part of: LPB68_RS21465
location: complement(5279..5503)
location: region:5279-5503:-1
so has part: feature:5279-5503:-1:exon

WP_157756204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5279-5503:-1:exon

LPB68_RS21470
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21470
old locus tag: LPB68_21470
so part of: sequence
location: complement(5765..6583)
location: region:5765-6583:-1
so has part: feature:5765-6583:-1:exon
subclass of: SO_0000010

position:5765:-1
position: 5765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6583:-1
position: 6583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5765-6583:-1:exon

LPB68_RS21470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21470
old locus tag: LPB68_21470
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSNERIEYIQDDGQLRVFIVPVDIMDVPDLSIYEQMVYMVLRSYVNPTDPTAFPSYPTIAKRGRMSRSSAIRAVEGLVQKGLITKELRLDVSKNRKIKNTSNLYTLIMPKKLKDNKGSVSQTRGVVSHRHGGSVSQTPNHNHLKEPLLNKIDCMNTHKELDSSSESIQNELYESLNKYIPKYFYIEGIPVGLEYIDEIFLMLITQFSDHLDPEIVEIAAKRYFDRTAKIALGTPNGVEMTLEVREPVALFQICYKESIALYKAKYNHATRRP
SIO_010081: LPB68_RS21470
subclass of: SO_0000673
so part of: LPB68_RS21470
location: complement(5765..6583)
location: region:5765-6583:-1
so has part: feature:5765-6583:-1:exon

WP_068658774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5765-6583:-1:exon

LPB68_RS21475
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21475
old locus tag: LPB68_21475
so part of: sequence
location: complement(6885..7802)
location: region:6885-7802:-1
so has part: feature:6885-7802:-1:exon
subclass of: SO_0000010

position:6885:-1
position: 6885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7802:-1
position: 7802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6885-7802:-1:exon

LPB68_RS21475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21475
old locus tag: LPB68_21475
inference: COORDINATES: protein motif:HMM:NF024244.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MGKSPCEVQVDKFFKHTRANSFATRDRYKDDCQQFSRFCSEKFKLQNIRNMNDKHVAAFIKDAQQKGLAPKTIKNKLSSLRYLHDLLDKPRYQLSDNKQLQLQHGIKLAKTPQVNGDRSWTNEEYSRMKEISRDLGNSNVADCMTLARTMGLRVTEAAAISRAQAEYAIRTGVYQVKGESKNGKHRQVPISPEGKAIFERRLVVTDRGNRLFIRTGERTHQVVNQMQKFVEYHRDKVKTVEGTETRLDKRDGSTRELTFHGLRYGYVQDRMREEVDRGFSRDQAALIVSKEVGHERGDVIKIYEG
SIO_010081: LPB68_RS21475
subclass of: SO_0000673
so part of: LPB68_RS21475
location: complement(6885..7802)
location: region:6885-7802:-1
so has part: feature:6885-7802:-1:exon

WP_068658776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6885-7802:-1:exon

LPB68_RS21480
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21480
old locus tag: LPB68_21480
so part of: sequence
location: 8729..8923
location: region:8729-8923:1
so has part: feature:8729-8923:1:exon
subclass of: SO_0000010

position:8729:1
position: 8729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8923:1
position: 8923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8729-8923:1:exon

LPB68_RS21480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21480
old locus tag: LPB68_21480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKELDYLMNYFSQCIADLEVEIEADPTNEFLKGKLQGIKYARVITSMYNLPEDFGHPIDVEID
SIO_010081: LPB68_RS21480
subclass of: SO_0000673
so part of: LPB68_RS21480
location: 8729..8923
location: region:8729-8923:1
so has part: feature:8729-8923:1:exon

WP_068658747.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8729-8923:1:exon

LPB68_RS21485
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21485
old locus tag: LPB68_21485
so part of: sequence
location: complement(9089..9799)
location: region:9089-9799:-1
so has part: feature:9089-9799:-1:exon
subclass of: SO_0000010

position:9089:-1
position: 9089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9799:-1
position: 9799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9089-9799:-1:exon

LPB68_RS21485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21485
old locus tag: LPB68_21485
inference: COORDINATES: protein motif:HMM:NF037419.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PBECR4 domain-containing protein
translation: MKNNSIPIPQGDDLCRCHLYILKLRGSALMFIRVDSLFRGNIMSLSVQDLLTLKELPSEDDLTLQLLAFFYEEHICHQIFHYKIRDKRRDIQLRFKTIDLPHLLGIHKIKTGSGYRGKRGFPELKNGNITLDLLKSANIGGYESTIHRILHFPFLYQLIHAPTFIIFNPHIARSMIDAEFMLYNRYSGRYIHLGIKKEASTDLYTPVTFLERKNVYNGMKIVPVDEIIIIPEKKDT
SIO_010081: LPB68_RS21485
subclass of: SO_0000673
so part of: LPB68_RS21485
location: complement(9089..9799)
location: region:9089-9799:-1
so has part: feature:9089-9799:-1:exon

WP_157756202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9089-9799:-1:exon

LPB68_RS21490
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21490
old locus tag: LPB68_21490
so part of: sequence
location: complement(10654..11364)
location: region:10654-11364:-1
so has part: feature:10654-11364:-1:exon
subclass of: SO_0000010

position:10654:-1
position: 10654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11364:-1
position: 11364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10654-11364:-1:exon

LPB68_RS21490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21490
old locus tag: LPB68_21490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTIPTLTVTNPIDIHWSHVGCTVLSSSKYGLEYDRIKVLHEIGLNAPLAQDESFYAPPANRAIDVRALFPDGNIVSFVGQRYSDLQDELQKYSQAVADGNVEELNRLHHLFLSTTMLSPVLFKAGTQVLTFEYELALYPMEGTPSDFELTLLAPMPSFRPAGQSQITVRIDLPSSNNLAFNADVIEAAGYEFDPATGAVTGEVQKIIEGDYGLRKIIVWNWQVDPFFRVHYRYR
SIO_010081: LPB68_RS21490
subclass of: SO_0000673
so part of: LPB68_RS21490
location: complement(10654..11364)
location: region:10654-11364:-1
so has part: feature:10654-11364:-1:exon

WP_068658751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10654-11364:-1:exon

LPB68_RS21495
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21495
old locus tag: LPB68_21495
so part of: sequence
location: complement(11782..13218)
location: region:11782-13218:-1
so has part: feature:11782-13218:-1:exon
subclass of: SO_0000010

position:11782:-1
position: 11782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13218:-1
position: 13218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11782-13218:-1:exon

LPB68_RS21495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21495
old locus tag: LPB68_21495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004676272.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA sulfur modification protein DndB
translation: MVQNVQEGISSLSDLITRKGDTSELQLKAFLCNNLGRNTLLAKVPMYEFYRMSEVANERSEDGTPVAQRKLDIKHAAELARYIIKGLISATVELNPSDDGPIMKARKRLQELVGKQPYLALQPIVANLRTAGRNGSNLRAQQLETADREGMGIRVWLGQKDIMWVVDGQHRRKAIQMVIEFLEEIRIDQKYPPKKQSLFPHNRDERIVPHDELAVWIECYELTRGDCTVSMDIHLGLNIIEERQLFHDLNNLAKKVEKSLALEFDSSNAVNAFIKDELIDGGLINVSMGDKLDWEDDDGSFSRKDLVAVNAHLILNKSNINSAAPAIVQPRLPIARRYWQSVAQIPGFGENGARRLTVSAQSVLLKAIAKLTYDFAFGRQADINLLDKLLDGITDMDFSHDNPMWRYYQLTEDELKRYGLDSLTEYLPDNATGNRDVGNFDSETGWMRFGAKHNDIYPIIGDMIRWKLRLPNRHESRL
SIO_010081: LPB68_RS21495
subclass of: SO_0000673
so part of: LPB68_RS21495
location: complement(11782..13218)
location: region:11782-13218:-1
so has part: feature:11782-13218:-1:exon

WP_068658753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11782-13218:-1:exon

LPB68_RS21500
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21500
old locus tag: LPB68_21500
so part of: sequence
location: complement(13462..13836)
location: region:13462-13836:-1
so has part: feature:13462-13836:-1:exon
subclass of: SO_0000010

position:13462:-1
position: 13462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13836:-1
position: 13836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462-13836:-1:exon

LPB68_RS21500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21500
old locus tag: LPB68_21500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000105161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKGISVSQSSANIVLQQKLDPAKQYTFQEIKDVLATEFNGINDNQCSGLIHRSHSKTDGVLVKSDKYYQLRATATTTNNGLEEAKSILKDALREIELIPNKQIKTAEQFNELIELKRKLNELIK
SIO_010081: LPB68_RS21500
subclass of: SO_0000673
so part of: LPB68_RS21500
location: complement(13462..13836)
location: region:13462-13836:-1
so has part: feature:13462-13836:-1:exon

WP_068658755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13462-13836:-1:exon

LPB68_RS21505
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21505
old locus tag: LPB68_21505
so part of: sequence
location: complement(14209..14559)
location: region:14209-14559:-1
so has part: feature:14209-14559:-1:exon
subclass of: SO_0000010

position:14209:-1
position: 14209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14559:-1
position: 14559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14209-14559:-1:exon

LPB68_RS21505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21505
old locus tag: LPB68_21505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008497382.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lactococcin
translation: MMTTYEENVASFEKIDSEKAQALVKGRAEALIYIGKAVCPYCQIFVEKLKKVAVETNTTIYYVNSAEKSDMEGITAFRNEYDIPTVPGFVVTKGDTVKVKCDSSMSEEEIKAIMNK
SIO_010081: LPB68_RS21505
subclass of: SO_0000673
so part of: LPB68_RS21505
location: complement(14209..14559)
location: region:14209-14559:-1
so has part: feature:14209-14559:-1:exon

WP_009499548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14209-14559:-1:exon

LPB68_RS21510
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
gene: gfa
locus tag: LPB68_RS21510
old locus tag: LPB68_21510
so part of: sequence
location: complement(14957..15538)
location: region:14957-15538:-1
so has part: feature:14957-15538:-1:exon
subclass of: SO_0000010

position:14957:-1
position: 14957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15538:-1
position: 15538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14957-15538:-1:exon

LPB68_RS21510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
gene: gfa
locus tag: LPB68_RS21510
old locus tag: LPB68_21510
EC number: 4.4.1.22
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000214001.1
GO function: GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO process: GO:0046292 - formaldehyde metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-(hydroxymethyl)glutathione synthase
translation: MTTTKLHPRLDNGITDYPEVKDFAGGTLKCLCESNRVEVKVDAQTLHNHACGCSKCWKPEGADFSLVAVVPRDKVHVISNGDKLEIVDETATIQRHFCKECKAHLFGRIENKDHAFYGLDFVHTELSEDKGWSAPQFAAFVSSVIETGTAPSQMADIRKELNNIGLPTYDVLSPELMDLLAAKTAELNGTLQE
SIO_010081: LPB68_RS21510
subclass of: SO_0000673
so part of: LPB68_RS21510
location: complement(14957..15538)
location: region:14957-15538:-1
so has part: feature:14957-15538:-1:exon

WP_040758723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14957-15538:-1:exon

LPB68_RS21515
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21515
old locus tag: LPB68_21515
so part of: sequence
location: complement(15564..16682)
location: region:15564-16682:-1
so has part: feature:15564-16682:-1:exon
subclass of: SO_0000010

position:15564:-1
position: 15564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16682:-1
position: 16682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15564-16682:-1:exon

LPB68_RS21515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21515
old locus tag: LPB68_21515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014824368.1
GO function: GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO process: GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
translation: MKSKAAVAFKAGEPLQIVEIDVEDPKAGEVLVKILYTSVCHTDAYTLSGDDPEGVFPAVLGHEGAGVVVAVGEGVTSVEPGDHVIPLYTPECGKCKFCLSGKTNLCSAIRETQGKGLMPDGTTRFSYNGEPIYHYMGTSTFSEYTVVSEISLVKVEDNNVPLDKVCLFGCGVTTGIGAVHNTAKVEEGAVTAVFGLGAIGLAVIQGLAQAKASRIIAIDMNDGKAELAKKMGATDFINPSKFDKPIQEVIVEMTEGGVDYSFECIGNVEVMRSALECCHKGWGESIIIGVAAGGKEIHTRPFQLVTGRVWKGSAFGGVKGRTELPGMIEDFMNGKIDLDSFITHHLDFMDINEAFDLLHKGESIRTILTYEK
SIO_010081: LPB68_RS21515
subclass of: SO_0000673
so part of: LPB68_RS21515
location: complement(15564..16682)
location: region:15564-16682:-1
so has part: feature:15564-16682:-1:exon

WP_009766654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15564-16682:-1:exon

LPB68_RS21520
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
locus tag: LPB68_RS21520
old locus tag: LPB68_21520
so part of: sequence
location: complement(16965..17327)
location: region:16965-17327:-1
so has part: feature:16965-17327:-1:exon
subclass of: SO_0000010

position:16965:-1
position: 16965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17327:-1
position: 17327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16965-17327:-1:exon

LPB68_RS21520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
locus tag: LPB68_RS21520
old locus tag: LPB68_21520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002339845.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MEINYKDKTYFTGKDLALSVIGGRWKIVIIWCLLQESPLRLSEMQKKLPEVNQRMLIRQLRELEDDNIIIRTVYPVVPPKVEYQLSEIGCLLEPVVTSICDWGDIFSNSLEKDAQKIEIE
SIO_010081: LPB68_RS21520
subclass of: SO_0000673
so part of: LPB68_RS21520
location: complement(16965..17327)
location: region:16965-17327:-1
so has part: feature:16965-17327:-1:exon

WP_068658757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16965-17327:-1:exon

LPB68_RS21525
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
gene: fghA
locus tag: LPB68_RS21525
old locus tag: LPB68_21525
so part of: sequence
location: 17700..18533
location: region:17700-18533:1
so has part: feature:17700-18533:1:exon
subclass of: SO_0000010

position:17700:1
position: 17700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18533:1
position: 18533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17700-18533:1:exon

LPB68_RS21525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
gene: fghA
locus tag: LPB68_RS21525
old locus tag: LPB68_21525
EC number: 3.1.2.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002144139.1
GO function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO process: GO:0046292 - formaldehyde metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-formylglutathione hydrolase
translation: MSLKLIEKHSSFDGLQYKYSHYSEVLQCDLTFSIYLPSNKEKKEIPLIWWLSGLTCTDDNFSQKSGFQRLAEKYQVAVIIPDTSPRGENVADDDAYDLGQGAGFYLNATQNPWAKNYKMYTYITDELSGIASTLVPNFSGKESIMGHSMGGHGALVIGMKNAARFKAISAFSPILNPSQVPWGIKAFSSYLGEDKANWKEWDASELIKETGVPPILISQGTADTFYPEQLEETTFLENARKNNQTVNYEKMEGYDHSYFFISTFLEDHFAFHVKQLR
SIO_010081: LPB68_RS21525
subclass of: SO_0000673
so part of: LPB68_RS21525
location: 17700..18533
location: region:17700-18533:1
so has part: feature:17700-18533:1:exon

WP_068658759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17700-18533:1:exon

LPB68_RS21530
type: Gene
subclass of: SO_0000704
RO_0002162: 1763538
gene: gshAB
locus tag: LPB68_RS21530
old locus tag: LPB68_21530
so part of: sequence
location: 18642..20912
location: region:18642-20912:1
so has part: feature:18642-20912:1:exon
subclass of: SO_0000010

position:18642:1
position: 18642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20912:1
position: 20912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18642-20912:1:exon

LPB68_RS21530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1763538
gene: gshAB
locus tag: LPB68_RS21530
old locus tag: LPB68_21530
EC number: 6.3.2.2
EC number: 6.3.2.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008497728.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB
translation: MDIKKMLVNDRVKPYLLKARYGIEKESKRVDLSGNLAKTDHPKSISMRDDHPYIQRDFSELQMEIITPVTETLEEQFNYLAAIHDVAYRSMGNNEMLWPLSMPPQLPEKEENIMIAKLKSVENVLYRQTLSNSYGRRKQMICGVHFNFEFGDELIQALFNTQSEIKDYRHFKTEIYLKATRNYLHYRWLFTYFYGASPSSEKNFFEEDSLNEAVRSIRNSKYGYTNSDDVQVSYSSIQNYLSDLSSMVKRGLLSEEKEFYSPVRLRGGHHVSDLADHGIRYIELRNIDLNPFEPYGIGYEQAEFLHLFLIYLLWKDEGENCDEWVKMGDFYNDIVALEHPLEHTQFEIEAKNMIDEMEHLAAILNLTISDTLFVHLREMLMDPSKTLAGRLYKESEKSSQGQVATSIAKENYKKLWDKPYQLTGFTDMELSTQILMFDAIQQGIQVEVLDRQDQFLKLQLKDHVEYVKNGNMTSKDSYVSTLIMENKTVTKKILQQHGFRVPKGKEFNDIEKALRSYDIFSTKPFVVKPKTTNYGLGISIFKEGANYEDYQKAITLAFKEDSSVLIEEFLNGTEYRFFVLNDKVYAILLRVPANVKGDGKHTIEELVIEKNRDPLRGRDHRTPLEIIQLGELENLMLKGQGYRADSIPKVDEIIYLRENSNVSTGGDSIDVTDEISDDYKKIAVDAVSALGAKISGIDLIIENKDVPAANNNAYGIIEANFNPSMYMHTYPYKGKSRRLTMHIIHYLFPELLQSQE
SIO_010081: LPB68_RS21530
subclass of: SO_0000673
so part of: LPB68_RS21530
location: 18642..20912
location: region:18642-20912:1
so has part: feature:18642-20912:1:exon

WP_040760344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18642-20912:1:exon