Paenibacillus crassostreae strain LPB0068 plasmid pPC01, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Paenibacillus sp. LPB0068 isolated from Crassostrea gigas
Submitted (21-OCT-2016) Public Health Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP017771.1.\nBacteria and source DNA available from Korean Agricultural Culture\nCollection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.86x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:20:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,507\nCDSs (total) :: 4,383\nGenes (coding) :: 4,308\nCDSs (with protein) :: 4,308\nGenes (RNA) :: 124\nrRNAs :: 10, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 29 of 75\nPseudo Genes (incomplete) :: 51 of 75\nPseudo Genes (internal stop) :: 15 of 75\nPseudo Genes (multiple problems) :: 17 of 75\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paenibacillus crassostreae
COORDINATES: similar to AA sequence:RefSeq:WP_016122973.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001178744.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019467708.1
COORDINATES: similar to AA sequence:RefSeq:WP_006676105.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024244.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF037419.2
COORDINATES: similar to AA sequence:RefSeq:WP_004676272.1
COORDINATES: similar to AA sequence:RefSeq:WP_000105161.1
COORDINATES: similar to AA sequence:RefSeq:WP_008497382.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214001.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014824368.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_002339845.1
COORDINATES: similar to AA sequence:RefSeq:WP_002144139.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008497728.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB