Secundilactobacillus malefermentans strain CBA3618 plasmid unnamed2, complete sequence.
type: Entry
definition: Secundilactobacillus malefermentans strain CBA3618 plasmid unnamed2, complete sequence.
sequence version: NZ_CP042373.1
sequence date: 2022-10-24
sequence: sequence
division: CON
label: NZ_CP042373.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11843680
keyword: RefSeq
source: Secundilactobacillus malefermentans
organism: Secundilactobacillus malefermentans
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Secundilactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP042373.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 459.16x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/24/2022 01:10:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,075\nCDSs (total) :: 1,992\nGenes (coding) :: 1,947\nCDSs (with protein) :: 1,947\nGenes (RNA) :: 83\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 14 of 45\nPseudo Genes (incomplete) :: 23 of 45\nPseudo Genes (internal stop) :: 12 of 45\nPseudo Genes (multiple problems) :: 4 of 45\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11901
topology: circular
so has quality: SO_0000988
location: 1..11901
location: region:1-11901:1
RO_0002162: 176292

NZ_CP042373
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11843680
type: BioSample
SIO_000068: biosample

1
title: Genome analyses of bacteria isolated from kimchi
author: Lee, S.
author: Ahn, S.
author: Roh, S.
journal: Unpublished

2
title: Direct Submission
author: Lee, S.
author: Ahn, S.
author: Roh, S.
journal: Submitted (14-JUN-2019) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11901:1:source
so part of: sequence
organism: Secundilactobacillus malefermentans
mol type: genomic DNA
strain: CBA3618
isolation source: kimchi
plasmid: unnamed2
country: South Korea

176292
type: Taxonomy
SIO_000068: taxonomy

FGL90_RS10270
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10270
old locus tag: FGL90_10270
so part of: sequence
location: 28..375
location: region:28-375:1
so has part: feature:28-375:1:exon
subclass of: SO_0000010

position:28:1
position: 28
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375:1
position: 375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28-375:1:exon

FGL90_RS10270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10270
old locus tag: FGL90_10270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3139 domain-containing protein
translation: MLKKIGYVIALLLGFFLIVWLAIYWQHRTYFTGAVRTYMVAQKIPKNSIKNQKIVFNWVNMGQWEEDVSIRHQHHTYQYIYNMSWQDKRVSLSIYDHREGVKDTLAPYPPLEYDR
SIO_010081: FGL90_RS10270
subclass of: SO_0000673
so part of: FGL90_RS10270
location: 28..375
location: region:28-375:1
so has part: feature:28-375:1:exon

WP_010620858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28-375:1:exon

FGL90_RS10275
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10275
old locus tag: FGL90_10275
so part of: sequence
location: 434..673
location: region:434-673:1
so has part: feature:434-673:1:exon
subclass of: SO_0000010

position:434:1
position: 434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:673:1
position: 673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434-673:1:exon

FGL90_RS10275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10275
old locus tag: FGL90_10275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511700.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLAELGSFALLISLVYWWFLMWHSFKLTRKTLVILNTVGTALMTILTWPITYGMLLIPILIIYAVSTFIIFKLPLSAK
SIO_010081: FGL90_RS10275
subclass of: SO_0000673
so part of: FGL90_RS10275
location: 434..673
location: region:434-673:1
so has part: feature:434-673:1:exon

WP_010620857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434-673:1:exon

FGL90_RS10280
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10280
old locus tag: FGL90_10280
so part of: sequence
location: complement(784..1350)
location: region:784-1350:-1
so has part: feature:784-1350:-1:exon
subclass of: SO_0000010

position:784:-1
position: 784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1350:-1
position: 1350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:784-1350:-1:exon

FGL90_RS10280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10280
old locus tag: FGL90_10280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620856.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MGKTIRQLSEELKLSKQAINQRINSINGFRSKHTYKVKNHLEIDNQGVKMLANFDKQKRQERQTNRQAENDKDKNIDHILLKQLDVKDQQIANLQQALDQQQKLQIATVSENHRLKEHVRKLSGLLDSSSATQQQKSNDKDDVLSNNVNTRHSKDKNDKQNENRVAEYNNRQKKVSKNKVNNSWWRFW
SIO_010081: FGL90_RS10280
subclass of: SO_0000673
so part of: FGL90_RS10280
location: complement(784..1350)
location: region:784-1350:-1
so has part: feature:784-1350:-1:exon

WP_147657959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:784-1350:-1:exon

FGL90_RS10525
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10525
old locus tag: FGL90_10285
pseudo: true
so part of: sequence
location: complement(<1567..1634)
location: region:1567-1634:-1
so has part: feature:1567-1634:-1:exon
subclass of: SO_0000010

position:1567:-1
position: 1567
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1634:-1
position: 1634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1567-1634:-1:exon

FGL90_RS10525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10525
old locus tag: FGL90_10285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014386284.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
SIO_010081: FGL90_RS10525
subclass of: SO_0000673
so part of: FGL90_RS10525
location: complement(<1567..1634)
location: region:1567-1634:-1
so has part: feature:1567-1634:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1567-1634:-1:exon

FGL90_RS10290
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10290
old locus tag: FGL90_10290
so part of: sequence
location: complement(1627..2562)
location: region:1627-2562:-1
so has part: feature:1627-2562:-1:exon
subclass of: SO_0000010

position:1627:-1
position: 1627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2562:-1
position: 2562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1627-2562:-1:exon

FGL90_RS10290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10290
old locus tag: FGL90_10290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNELIKYDPELNTIPLRKFTPIEMNLFFSIISRMRDKGDQTVRFSFEQLKDLSNYKPTANNRFEDDIQRTYEKLMGLHFGRRSKSGLNREMFVMFTKFSIVGEADSPYIDVEVYKDALPLLNNLDTWVRYALAEFRDLRSSYAKTAFRLLKGFRTTGYAFLSKEDFFELLDIPKSYWTKSGDIDRYVIKPIKEELTPLFRGLAIRKKYGKGRGKPVIGYSFTWKPEKKGANDFSQGKLQDERQKLFNIQHNSELTEQEKWRATDKVKGLPLGSTEKQALADKQAEHDKKIRDQARQEALAELRKGFGNNA
SIO_010081: FGL90_RS10290
subclass of: SO_0000673
so part of: FGL90_RS10290
location: complement(1627..2562)
location: region:1627-2562:-1
so has part: feature:1627-2562:-1:exon

WP_147657961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1627-2562:-1:exon

FGL90_RS10295
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10295
old locus tag: FGL90_10295
so part of: sequence
location: complement(3283..3495)
location: region:3283-3495:-1
so has part: feature:3283-3495:-1:exon
subclass of: SO_0000010

position:3283:-1
position: 3283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3495:-1
position: 3495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3283-3495:-1:exon

FGL90_RS10295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10295
old locus tag: FGL90_10295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGVIKMDEKKVLKPIDEMLADPWQVDIQELFEASVNEPDEIKKNLYDSLYTYILQKRQEDIINRPGFVI
SIO_010081: FGL90_RS10295
subclass of: SO_0000673
so part of: FGL90_RS10295
location: complement(3283..3495)
location: region:3283-3495:-1
so has part: feature:3283-3495:-1:exon

WP_010015136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3283-3495:-1:exon

FGL90_RS10300
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10300
old locus tag: FGL90_10300
so part of: sequence
location: complement(3870..4229)
location: region:3870-4229:-1
so has part: feature:3870-4229:-1:exon
subclass of: SO_0000010

position:3870:-1
position: 3870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4229:-1
position: 4229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3870-4229:-1:exon

FGL90_RS10300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10300
old locus tag: FGL90_10300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002340715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLDFKSNKYDLFDDWHQNKTKQAFTQKLQQQAQIEKTHLPKLLSREDLKIRWQMNSRQSVHQVASKPDFPQPVFAFNHGKTPLYLATEIQIFEINHPWVITPGSRLAYSHWILRNVID
SIO_010081: FGL90_RS10300
subclass of: SO_0000673
so part of: FGL90_RS10300
location: complement(3870..4229)
location: region:3870-4229:-1
so has part: feature:3870-4229:-1:exon

WP_147657963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3870-4229:-1:exon

FGL90_RS10305
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10305
old locus tag: FGL90_10305
so part of: sequence
location: complement(4242..4829)
location: region:4242-4829:-1
so has part: feature:4242-4829:-1:exon
subclass of: SO_0000010

position:4242:-1
position: 4242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4829:-1
position: 4829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4242-4829:-1:exon

FGL90_RS10305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10305
old locus tag: FGL90_10305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTVFQVGKATLLRVSDVMKLRWTDVFNENGAVRQNAFIHDQKTGKANLLYLKPVQTDLLAYQAWLQENHLVSDWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMNLLNHSSEAMTLAYLGLDQASTETMLDKIDFG
SIO_010081: FGL90_RS10305
subclass of: SO_0000673
so part of: FGL90_RS10305
location: complement(4242..4829)
location: region:4242-4829:-1
so has part: feature:4242-4829:-1:exon

WP_147657964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4242-4829:-1:exon

FGL90_RS10310
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10310
old locus tag: FGL90_10310
so part of: sequence
location: 4906..5184
location: region:4906-5184:1
so has part: feature:4906-5184:1:exon
subclass of: SO_0000010

position:4906:1
position: 4906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5184:1
position: 5184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4906-5184:1:exon

FGL90_RS10310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10310
old locus tag: FGL90_10310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVEPDDDYWGQFK
SIO_010081: FGL90_RS10310
subclass of: SO_0000673
so part of: FGL90_RS10310
location: 4906..5184
location: region:4906-5184:1
so has part: feature:4906-5184:1:exon

WP_060678116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4906-5184:1:exon

FGL90_RS10315
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10315
old locus tag: FGL90_10315
so part of: sequence
location: 5184..5540
location: region:5184-5540:1
so has part: feature:5184-5540:1:exon
subclass of: SO_0000010

position:5540:1
position: 5540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5184-5540:1:exon

FGL90_RS10315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10315
old locus tag: FGL90_10315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDKSIIDEVRAAIDLLLEQQQLPPEFEDHELNRRMSGYNEFHLRDTPKNKIPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNDE
SIO_010081: FGL90_RS10315
subclass of: SO_0000673
so part of: FGL90_RS10315
location: 5184..5540
location: region:5184-5540:1
so has part: feature:5184-5540:1:exon

WP_056947047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5184-5540:1:exon

FGL90_RS10320
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10320
old locus tag: FGL90_10320
so part of: sequence
location: 5644..6894
location: region:5644-6894:1
so has part: feature:5644-6894:1:exon
subclass of: SO_0000010

position:5644:1
position: 5644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6894:1
position: 6894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5644-6894:1:exon

FGL90_RS10320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10320
old locus tag: FGL90_10320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014333962.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MLVKDAVPLPAPLIEVVKNYLIIKKAATIWYLTKKTGSATVLSIATILGMLPMVILSPFVGPMVDRWNKKGLLIFPDVFAACFAIILSVSGTVFHVFPLWLIFISLLMRSCAQTFQMPTIQSVMPTMVPDKEITRMNGQLGMVQSANMIIAPALGAFLFAFIPIEYLILLDVLGAIIGICILTWVQIPNNEKIDQPMHVLHNTRLGIKQLTNNKGLWYITLIGAVFTLTYMPAASMYPLMTMKYFQGTVSQAGLIEAIYSTGMLIGGTIIGLFGKWQDRMKPVIIAFFLVGIPTGISGILPGNQTGFLWFAALNIIEGIATPFFTTLLMAMIQQSYPAEELGQILGVLNSLLNLAGPIGLIFAGPLADVIGIERLFVIAGIGAAICGVVAVLMPITRQYDIRLHQKLAKLTEQPDK
SIO_010081: FGL90_RS10320
subclass of: SO_0000673
so part of: FGL90_RS10320
location: 5644..6894
location: region:5644-6894:1
so has part: feature:5644-6894:1:exon

WP_147657966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5644-6894:1:exon

FGL90_RS10325
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10325
old locus tag: FGL90_10325
so part of: sequence
location: complement(6969..9215)
location: region:6969-9215:-1
so has part: feature:6969-9215:-1:exon
subclass of: SO_0000010

position:6969:-1
position: 6969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9215:-1
position: 9215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6969-9215:-1:exon

FGL90_RS10325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10325
old locus tag: FGL90_10325
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003660027.1
GO function: GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO process: GO:0006825 - copper ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MANKEDHMNMKNMSAKNMENNESNMSHMDHDDMKMDHDMTETDHNQMNMDHDMAEMDHGQMNMDHETMNMSGMNHGDMDMAGTDMMMHGGSMMHMGNLKVKFWVSVVLAIPVLLLAPIMGLNVSILSFSSPLIVGIIIVLFDTALYFYGGMPFLKGAKSEIQDKSPEMMTLVTLGISVSYFYSLYAFIANNFLNPANHVMDFSFELATLILIMLLGHWIEMNALMGAGDALQKMAALLPKTAHLVTDNGETKEVPVSDLKIGQAFQVRSGESIPADGVITAGESTVNEALVTGESAAVTKNVGDKVIGGATNNNGTLTVKISGTGDSGYLSQVMKMVQNAQQAKSKAEDKADLVAKYLFYAAFGVGIIAFFAWLPQGLATAMTIMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVRNRQAIEASQHVSHVLLDKTGTLTEGKFTVNALIPNDGIDETTLLSRLAALENNSTHPLAQAIITEAQAKDIEVVAAEKSQNIPGVGISGNVDGTDYTIVNGNYLTKQGIRFDEAAADKWAAKGNSVSFLLQGTQVQGMVAEGDTIKAGAKELISGLQRRGITPVMLTGDNPKAAEHVANLLGLTEFHAGLLPDDKQKIIADYQAKGNHVIMVGDGVNDAPSLAAADIGIAIGAGTDVAIDSADVVLVKSEPSDILHFLDLAKITNRKMVQNLWWGAGYNIVAIPLAAGVLSFIGIILDPAVGAVVMAMSTIIVAINAMGLTGEKIKNV
SIO_010081: FGL90_RS10325
subclass of: SO_0000673
so part of: FGL90_RS10325
location: complement(6969..9215)
location: region:6969-9215:-1
so has part: feature:6969-9215:-1:exon

WP_147657968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6969-9215:-1:exon

FGL90_RS10330
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10330
old locus tag: FGL90_10330
so part of: sequence
location: complement(9466..9897)
location: region:9466-9897:-1
so has part: feature:9466-9897:-1:exon
subclass of: SO_0000010

position:9466:-1
position: 9466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9897:-1
position: 9897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9466-9897:-1:exon

FGL90_RS10330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10330
old locus tag: FGL90_10330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016497299.1
GO process: GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopY/TcrY family copper transport repressor
translation: MKDAKNVTITDSEWMVMRAIWTMGHATSRELIDAMNELEGWSASTTKTLLHRLIQKQAVAQHGGSRPFTYKPVVGEKESMAAAADDLFDHMCAMRAGSTIAGVIQSRELSRADIANLQAILAEKAKTAPEEVQCNCLPGDQTC
SIO_010081: FGL90_RS10330
subclass of: SO_0000673
so part of: FGL90_RS10330
location: complement(9466..9897)
location: region:9466-9897:-1
so has part: feature:9466-9897:-1:exon

WP_002816262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9466-9897:-1:exon

FGL90_RS10420
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10420
pseudo: true
so part of: sequence
location: 10178..>10312
location: region:10178-10312:1
so has part: feature:10178-10312:1:exon
subclass of: SO_0000010

position:10178:1
position: 10178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10312:1
position: 10312
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10178-10312:1:exon

FGL90_RS10420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: FGL90_RS10420
subclass of: SO_0000673
so part of: FGL90_RS10420
location: 10178..>10312
location: region:10178-10312:1
so has part: feature:10178-10312:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10178-10312:1:exon

FGL90_RS10335
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10335
old locus tag: FGL90_10335
pseudo: true
so part of: sequence
location: <10307..10478
location: region:10307-10478:1
so has part: feature:10307-10478:1:exon
subclass of: SO_0000010

position:10307:1
position: 10307
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10478:1
position: 10478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10307-10478:1:exon

FGL90_RS10335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10335
old locus tag: FGL90_10335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
SIO_010081: FGL90_RS10335
subclass of: SO_0000673
so part of: FGL90_RS10335
location: <10307..10478
location: region:10307-10478:1
so has part: feature:10307-10478:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10307-10478:1:exon

FGL90_RS10340
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10340
old locus tag: FGL90_10340
so part of: sequence
location: 11020..11487
location: region:11020-11487:1
so has part: feature:11020-11487:1:exon
subclass of: SO_0000010

position:11020:1
position: 11020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11487:1
position: 11487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11020-11487:1:exon

FGL90_RS10340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10340
old locus tag: FGL90_10340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003639769.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MKYAKTKAVLNQLVADLSQMSMIIHQTHWYMRGPNFLKLHPLMDEFMEEIDSQLDVISERLIALDGSPYSTLKEMAENTKIQDWPGEWDKTTPERLAHLVDGYRYLEDLYQHGIEVSDVEKDFSTQDIFIGLKTAIEKKIWMIQAELGSAPEIDE
SIO_010081: FGL90_RS10340
subclass of: SO_0000673
so part of: FGL90_RS10340
location: 11020..11487
location: region:11020-11487:1
so has part: feature:11020-11487:1:exon

WP_054656478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11020-11487:1:exon

FGL90_RS10345
type: Gene
subclass of: SO_0000704
RO_0002162: 176292
locus tag: FGL90_RS10345
old locus tag: FGL90_10345
pseudo: true
so part of: sequence
location: complement(<11529..11618)
location: region:11529-11618:-1
so has part: feature:11529-11618:-1:exon
subclass of: SO_0000010

position:11529:-1
position: 11529
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11618:-1
position: 11618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11529-11618:-1:exon

FGL90_RS10345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 176292
locus tag: FGL90_RS10345
old locus tag: FGL90_10345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: FGL90_RS10345
subclass of: SO_0000673
so part of: FGL90_RS10345
location: complement(<11529..11618)
location: region:11529-11618:-1
so has part: feature:11529-11618:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11529-11618:-1:exon