Pseudoalteromonas agarivorans strain Hao 2018 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Complete Genome Sequence and Transcriptomic Profiles of a Marine Bacterium, Pseudoalteromonas agarivorans Hao 2018
Submitted (15-OCT-2018) State Key Laboratory of Material and Green Papermaking, College of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Guyun Lake, Jinan, Shandong 250353, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP033067.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP4; CANU v. V1.6; SPAdes v.\n v3.11.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 207.0x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/22/2023 04:31:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,096\nCDSs (total) :: 3,965\nGenes (coding) :: 3,923\nCDSs (with protein) :: 3,923\nGenes (RNA) :: 131\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 102\nncRNAs :: 4\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 16 of 42\nPseudo Genes (incomplete) :: 25 of 42\nPseudo Genes (internal stop) :: 5 of 42\nPseudo Genes (multiple problems) :: 3 of 42\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001256493.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugal transfer mating pair stabilization protein TraN
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_006683136.1
COORDINATES: protein motif:HMM:NF012772.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005507567.1
TrbC family F-type conjugative pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_017085233.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013184404.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085231.1
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_012729610.1
COORDINATES: similar to AA sequence:RefSeq:WP_000993344.1
TraA family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_010845916.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_000647304.1
COORDINATES: similar to AA sequence:RefSeq:WP_000794249.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_001049717.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_000433889.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_000743450.1
COORDINATES: similar to AA sequence:RefSeq:WP_000332868.1
COORDINATES: similar to AA sequence:RefSeq:WP_000661886.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_011899408.1
COORDINATES: similar to AA sequence:RefSeq:WP_013184413.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364239.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF015140.2
GO:0007154 - cell communication [Evidence IEA]
COORDINATES: protein motif:HMM:NF019237.2
COORDINATES: similar to AA sequence:RefSeq:WP_007643708.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009840006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840005.1
COORDINATES: protein motif:HMM:NF025438.2
COORDINATES: similar to AA sequence:RefSeq:WP_017086522.1
COORDINATES: similar to AA sequence:RefSeq:WP_017086523.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077911.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017356992.1
COORDINATES: similar to AA sequence:RefSeq:WP_001115073.1
COORDINATES: similar to AA sequence:RefSeq:WP_000829618.1
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011899305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899307.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141662.1
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: similar to AA sequence:RefSeq:WP_017086038.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221096.1
COORDINATES: protein motif:HMM:NF013014.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221094.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000790614.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221091.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005507645.1
COORDINATES: protein motif:HMM:TIGR02740.1
COORDINATES: similar to AA sequence:RefSeq:WP_019456105.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554728.1
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016707608.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783548.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019283264.1
COORDINATES: similar to AA sequence:RefSeq:WP_019283265.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019283266.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011638875.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110837.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110844.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008110845.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008110847.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_008110850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110852.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110853.1
COORDINATES: protein motif:HMM:NF013676.2
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006991878.1
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: similar to AA sequence:RefSeq:WP_013465392.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555478.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555477.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221062.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221057.1
COORDINATES: similar to AA sequence:RefSeq:WP_000184110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899375.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899380.1
COORDINATES: similar to AA sequence:RefSeq:WP_001337697.1
COORDINATES: similar to AA sequence:RefSeq:WP_001102699.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
class I ribonucleotide reductase maintenance protein YfaE
COORDINATES: similar to AA sequence:RefSeq:WP_000018871.1
COORDINATES: similar to AA sequence:RefSeq:WP_000039317.1
COORDINATES: similar to AA sequence:RefSeq:WP_000170086.1
COORDINATES: similar to AA sequence:RefSeq:WP_000706865.1
COORDINATES: similar to AA sequence:RefSeq:WP_001282585.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: similar to AA sequence:RefSeq:WP_001139247.1
CbbQ/NirQ/NorQ C-terminal domain-containing protein