Methylomagnum ishizawai strain RS11D-Pr plasmid pRS11DPr7, complete sequence.
type: Entry
definition: Methylomagnum ishizawai strain RS11D-Pr plasmid pRS11DPr7, complete sequence.
sequence version: NZ_AP019790.1
sequence date: 2023-05-19
sequence: sequence
division: CON
label: NZ_AP019790.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00172935
keyword: RefSeq
source: Methylomagnum ishizawai
organism: Methylomagnum ishizawai
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomagnum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP019790.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 725x\nSequencing Technology :: Illumina NextSeq, GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 06:14:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,693\nCDSs (total) :: 4,634\nGenes (coding) :: 4,584\nCDSs (with protein) :: 4,584\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 17 of 50\nPseudo Genes (incomplete) :: 34 of 50\nPseudo Genes (internal stop) :: 3 of 50\nPseudo Genes (multiple problems) :: 4 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13203
topology: circular
so has quality: SO_0000988
location: 1..13203
location: region:1-13203:1
RO_0002162: 1760988

NZ_AP019790
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00172935
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Methylomagnum ishizawai strain RS11D-Pr
author: Asakawa, S.
author: Khalifa, A.
author: Lee, C.G.
author: Ogiso, T.
author: Ueno, C.
author: Dianou, D.
journal: Unpublished

2
title: Direct Submission
author: Asakawa, S.
author: Watanabe, T.
journal: Submitted (28-JUN-2019) Contact:Susumu Asakawa Nagoya University, Graduate School of Bioagricultural Sciences; Chikusa, Furocho 1, Nagoya, Aichi 464-8601, Japan URL :https://www.agr.nagoya-u.ac.jp/%7Esoil/ Soil_Biology_and_Chemistry/toppupeji.html

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13203:1
position: 13203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13203:1:source
so part of: sequence
organism: Methylomagnum ishizawai
mol type: genomic DNA
strain: RS11D-Pr
isolation source: rice rhizosphere
culture collection: JCM:18894
type material: type strain of Methylomagnum ishizawai
plasmid: pRS11DPr7
country: Japan:Aichi, Anjo, Anjo Agricultural and Extension Centre
lat lon: 34.97 N 137.07 E
collection date: 2003-08-11

1760988
type: Taxonomy
SIO_000068: taxonomy

K5658_RS23280
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23280
so part of: sequence
location: join(11967..13203,1..320)
location: region:1-13203:1
so has part: feature:11967-13203:1:exon
so has part: feature:1-320:1:exon
subclass of: SO_0000010

80837184
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:11967-13203:1:exon

position:11967:1
position: 11967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-320:1:exon

position:320:1
position: 320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

K5658_RS23280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MKRAGLLQGQGTLYFGQSPSKYDLSLPGDGHSILIGGAGSGKSAEFLLPNLLKLGLDSAALVLDCKGELSAVTMASHAPRNIQAYYINPYGLHTGNPWFIPQHRLFPLDYIDPDSPTFTADIRMTMEALIPIQSGTKDDYWEERARLWCAALMKFLAVSFGHVDILEFYRLLNIIKGDFGKFEQIARDYIIPLGMDDVTSVVQDILYERREAGRTYAGVISNIFKNIAWLDDPSLQACFSSQDFSMKILTEPRHRVFIILPAEYMGIYKSFLRLLILAGMIYKQRAPQAGRVLFALDEAGQLGYSESIERAYTYGRGAGIRMLAIFQSLGQLSGYPANGQNVMASASLRLFMGTRDYPTAELVSKSLGERTYEYIDPKHQAMARQQKAQALLSMLQSNQDPFAAAVAAVHASRSATLGDRMSRALLAPDEVLNLPQNQLIALTSGMNCPPILAGKVPYWLREDMAGLFLPNPYHPPYDSITVPLGRMKTAQKRVICERVPERLQHYPQYQQGYLSRLS
SIO_010081: K5658_RS23280
subclass of: SO_0000673
so part of: K5658_RS23280
location: join(11967..13203,1..320)
location: region:1-13203:1
so has part: feature:11967-13203:1:exon
so has part: feature:1-320:1:exon

WP_221067525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11967-13203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-320:1:exon

K5658_RS23285
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23285
old locus tag: MishRS11D_46440
so part of: sequence
location: 364..822
location: region:364-822:1
so has part: feature:364-822:1:exon
subclass of: SO_0000010

80837185
type: Gene
SIO_000068: ncbigene

position:364:1
position: 364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:822:1
position: 822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364-822:1:exon

K5658_RS23285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23285
old locus tag: MishRS11D_46440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEEDDSWRPAHAPDVQYDFHAASSQPERPVFHKPLSPAQQEYERYRNQKLSELLRFKDRFLEEKKDNIATKQELERLLAERSKPQPDYALKPRGYEQMKNLHQRTLEGKARVDELVKQLAPLQNRARDDFNMHADNFLYEKAKAERGMERD
SIO_010081: K5658_RS23285
subclass of: SO_0000673
so part of: K5658_RS23285
location: 364..822
location: region:364-822:1
so has part: feature:364-822:1:exon

WP_221067526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:364-822:1:exon

K5658_RS23290
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23290
old locus tag: MishRS11D_46460
so part of: sequence
location: complement(1227..1586)
location: region:1227-1586:-1
so has part: feature:1227-1586:-1:exon
subclass of: SO_0000010

80837186
type: Gene
SIO_000068: ncbigene

position:1227:-1
position: 1227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1586:-1
position: 1586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1227-1586:-1:exon

K5658_RS23290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23290
old locus tag: MishRS11D_46460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKVERTRLDFELEEIPSLRGLGSDKPEPTPEQEKRMIEEGEKLGFVDRQPREKRSRRIRSPFTEPLGIRVRPGIKELFQDLGAHLGVYDHTTFEKALLALIEKEGTPEQKERLKLLLK
SIO_010081: K5658_RS23290
subclass of: SO_0000673
so part of: K5658_RS23290
location: complement(1227..1586)
location: region:1227-1586:-1
so has part: feature:1227-1586:-1:exon

WP_221067527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1227-1586:-1:exon

K5658_RS23295
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23295
old locus tag: MishRS11D_46470
so part of: sequence
location: complement(1579..2292)
location: region:1579-2292:-1
so has part: feature:1579-2292:-1:exon
subclass of: SO_0000010

80837187
type: Gene
SIO_000068: ncbigene

position:1579:-1
position: 1579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2292:-1
position: 2292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1579-2292:-1:exon

K5658_RS23295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23295
old locus tag: MishRS11D_46470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017482541.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPTIVFASSKGGAGKTTAAILLAGGLSQIAERQSIQITLIDADPNQHSAKWALKPNCPQNLKLVQNATADNILDAIEEGEKNDGFVIVDLEGTASLTVTSAASRADLVIIPCQGSQADAEEAAKTIKLLKNQGRVLGRNIPFAVLMTRTNPAIVPRTLLHITSEFERAGIDLFTCSIIDREAFRAVLSFGGLVSNLPKSEVSGIEKATDNMRAFVLEVIEKLTAHKNAQPGRRAYHG
SIO_010081: K5658_RS23295
subclass of: SO_0000673
so part of: K5658_RS23295
location: complement(1579..2292)
location: region:1579-2292:-1
so has part: feature:1579-2292:-1:exon

WP_221067528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1579-2292:-1:exon

K5658_RS23300
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23300
old locus tag: MishRS11D_46480
so part of: sequence
location: complement(3668..4936)
location: region:3668-4936:-1
so has part: feature:3668-4936:-1:exon
subclass of: SO_0000010

80837188
type: Gene
SIO_000068: ncbigene

position:3668:-1
position: 3668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4936:-1
position: 4936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3668-4936:-1:exon

K5658_RS23300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23300
old locus tag: MishRS11D_46480
inference: COORDINATES: protein motif:HMM:NF016670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MTDEIKPSEAQEPVKQKSLSQKRKESRLLDALHIYTTPASHADLVFIARELVLCTLPHSDPGNVPVWGRTNGKLTLKIQPGYKKDDKTGKYICIGYPYGTIPRLILIWMITEILRTKSRRLELGHHLSDFLAKIGLSLATGGGVRGDAKRVRQQMERLFRSIISFEYSQSDSGRTGSAWVDMQVAPDGFFWWDEKSPDQAVLWGSWIEVGEKFYQAVLANPYPLDIRVLRHIKNSALGIDLYTILNREAYRARKDGKPRFLAWEWLYVQTGNEYTTEHALDNFRRKALEQIAQILEVHSGLLVTLQKGHRGQKSGLVISNHSTPSIAPTPQAPSELPGSEAAARLASLPPKFALVPPMPQPTTRQLRPATVETFRECYPVLDPYECQRAFDYWQAGLPEDKRAKHYDRAFLGFARKWVFGKA
SIO_010081: K5658_RS23300
subclass of: SO_0000673
so part of: K5658_RS23300
location: complement(3668..4936)
location: region:3668-4936:-1
so has part: feature:3668-4936:-1:exon

WP_221067529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3668-4936:-1:exon

K5658_RS23305
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23305
old locus tag: MishRS11D_46490
so part of: sequence
location: complement(5048..5263)
location: region:5048-5263:-1
so has part: feature:5048-5263:-1:exon
subclass of: SO_0000010

80837189
type: Gene
SIO_000068: ncbigene

position:5048:-1
position: 5048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5263:-1
position: 5263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5048-5263:-1:exon

K5658_RS23305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23305
old locus tag: MishRS11D_46490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMDDEKEIPLYAGSGNVFADLGLPDAEEALARLAQQIKRQVQEGCNSGENIHAEIVFNRLSAKYKAMIDES
SIO_010081: K5658_RS23305
subclass of: SO_0000673
so part of: K5658_RS23305
location: complement(5048..5263)
location: region:5048-5263:-1
so has part: feature:5048-5263:-1:exon

WP_221067530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5048-5263:-1:exon

K5658_RS23310
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23310
old locus tag: MishRS11D_46500
so part of: sequence
location: complement(5266..5685)
location: region:5266-5685:-1
so has part: feature:5266-5685:-1:exon
subclass of: SO_0000010

80837190
type: Gene
SIO_000068: ncbigene

position:5266:-1
position: 5266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5685:-1
position: 5685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5266-5685:-1:exon

K5658_RS23310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23310
old locus tag: MishRS11D_46500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015767684.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MRVVLDTNVLVSALLVESSLPAKLVTHWRQGRFTLITAVPQLEELARVTRYPKIRARLKPALAGRLVNDLREVAVMVEALPLIDASPDPYDNYLLSIASGGEADYLVTGDKPDLLALGHYGRTRIVSVRDFITLAKFLQ
SIO_010081: K5658_RS23310
subclass of: SO_0000673
so part of: K5658_RS23310
location: complement(5266..5685)
location: region:5266-5685:-1
so has part: feature:5266-5685:-1:exon

WP_221067531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5266-5685:-1:exon

K5658_RS23315
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23315
old locus tag: MishRS11D_46510
so part of: sequence
location: complement(5689..5970)
location: region:5689-5970:-1
so has part: feature:5689-5970:-1:exon
subclass of: SO_0000010

80837191
type: Gene
SIO_000068: ncbigene

position:5689:-1
position: 5689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5970:-1
position: 5970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5689-5970:-1:exon

K5658_RS23315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23315
old locus tag: MishRS11D_46510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002707884.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MGDNTTRWTVTVSKETDIAVRSLLAQRGLKKGDLSKFIEDAVRWRVFDQTIAETRAGFADIAPEDLQDLIAEATEAVRNDMRQSLISTSTKEL
SIO_010081: K5658_RS23315
subclass of: SO_0000673
so part of: K5658_RS23315
location: complement(5689..5970)
location: region:5689-5970:-1
so has part: feature:5689-5970:-1:exon

WP_221067533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5689-5970:-1:exon

K5658_RS23320
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23320
old locus tag: MishRS11D_46520
so part of: sequence
location: 6153..6707
location: region:6153-6707:1
so has part: feature:6153-6707:1:exon
subclass of: SO_0000010

80837192
type: Gene
SIO_000068: ncbigene

position:6153:1
position: 6153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6707:1
position: 6707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6153-6707:1:exon

K5658_RS23320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23320
old locus tag: MishRS11D_46520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011643442.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKYGYARVSTEDQKADLQIAALEKAGCEYVFTDTASGASSKRPELARCLESLRAGDTLVVWKLDRLGRSLSHLVAVLSDLQAKGVAFQSLTEAIDTQNAAGRLMGHILGALAEFERALIVERTQAGLKAAKRRGQKLGRRPALSEDQRKHARELLAGGQSPATVAKLLNVCRATLYNSLKDKAG
SIO_010081: K5658_RS23320
subclass of: SO_0000673
so part of: K5658_RS23320
location: 6153..6707
location: region:6153-6707:1
so has part: feature:6153-6707:1:exon

WP_221067532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6153-6707:1:exon

K5658_RS23325
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23325
old locus tag: MishRS11D_46530
so part of: sequence
location: complement(6713..7975)
location: region:6713-7975:-1
so has part: feature:6713-7975:-1:exon
subclass of: SO_0000010

80837193
type: Gene
SIO_000068: ncbigene

position:6713:-1
position: 6713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7975:-1
position: 7975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6713-7975:-1:exon

K5658_RS23325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23325
old locus tag: MishRS11D_46530
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIVKINPRGRSFKGVTDYLSHDKQAQTSERVSWHQTGNLHTDDLHKAARFMAWTDMNASELKRISGGSRAGRETKAGGIYHYSLSWHESETPTQEDQRQAGLETLRRLGLSEHQYYMVGHNDTRNPHIHIVANLTHPETGKRHVPSFDKRALQEWALEYEKTHGLHCKAREQNAKTRARGEQTKHQDTRQPSAASITQIYHAARDGKAFAAALEGQGYTLAQGRRGGLVIVDPSGDIHKLARQIDGIKTADIKAKLADLETKALPDAETLKKTRQPAPQKESQAPESKRADQGKPDRASSLKALLNERAQPPATFRPTPALREVLNEKAQAVPHVKKPQEEEQTRQRIRQALSARAPEKKEKAPAPPPMEQSRATANDNRQGGDLRQAFKPATRQEKSHKPERQPAPDPGEGRNDPELER
SIO_010081: K5658_RS23325
subclass of: SO_0000673
so part of: K5658_RS23325
location: complement(6713..7975)
location: region:6713-7975:-1
so has part: feature:6713-7975:-1:exon

WP_221067519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6713-7975:-1:exon

K5658_RS23330
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
gene: mobC
locus tag: K5658_RS23330
old locus tag: MishRS11D_46540
so part of: sequence
location: complement(7953..8294)
location: region:7953-8294:-1
so has part: feature:7953-8294:-1:exon
subclass of: SO_0000010

80837194
type: Gene
SIO_000068: ncbigene

position:7953:-1
position: 7953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8294:-1
position: 8294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8294:-1:exon

K5658_RS23330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
gene: mobC
locus tag: K5658_RS23330
old locus tag: MishRS11D_46540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MKKPEARPNKTARLPETRVTPEELGIIKAKAEKAGLSVSEYQRRALINGRVIVRESRADPDLIRNLAAIGNNLNQLVRKTHIHEETDTQKMRDILAVIEELIGGLLGDRENQP
SIO_010081: K5658_RS23330
subclass of: SO_0000673
so part of: K5658_RS23330
location: complement(7953..8294)
location: region:7953-8294:-1
so has part: feature:7953-8294:-1:exon

WP_221067520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8294:-1:exon

K5658_RS23335
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23335
old locus tag: MishRS11D_46550
so part of: sequence
location: complement(8691..8879)
location: region:8691-8879:-1
so has part: feature:8691-8879:-1:exon
subclass of: SO_0000010

80837195
type: Gene
SIO_000068: ncbigene

position:8691:-1
position: 8691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8879:-1
position: 8879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8691-8879:-1:exon

K5658_RS23335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23335
old locus tag: MishRS11D_46550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018264003.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKPDLIAYQVKNVEGREKGIWNRIGAAWAHENGEGYNIALDALPLDGKIILIKPLEKDED
SIO_010081: K5658_RS23335
subclass of: SO_0000673
so part of: K5658_RS23335
location: complement(8691..8879)
location: region:8691-8879:-1
so has part: feature:8691-8879:-1:exon

WP_221067521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8691-8879:-1:exon

K5658_RS23340
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23340
old locus tag: MishRS11D_46560
so part of: sequence
location: complement(9046..9978)
location: region:9046-9978:-1
so has part: feature:9046-9978:-1:exon
subclass of: SO_0000010

80837196
type: Gene
SIO_000068: ncbigene

position:9046:-1
position: 9046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9978:-1
position: 9978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9046-9978:-1:exon

K5658_RS23340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23340
old locus tag: MishRS11D_46560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIRNKEDTSKRLRCDVLQALCHEAGMDEKTCIERLSQYLLKTKDSEAANIRAIRQQVRGWFEGVHEAKGKSLDHLAAFFAAVWPQEDRPFDPKWLCMSVDELQNENYMKAVYELKRFTGIFKPYQEYVDTVKDDSLKGLCIDHEYDFYLYRMHSSKKLARDVLRVKSHGRGHVVAELYQYSEHFTSIKIRETSIKTYKGFGFFYQQRLFYLIFMSPTKKDGPEPSFLILNIDDKNMYVEGTISGISDNHSPSCGVILREKCEKRLDDPKEYVGVLEKFNVPLEKVREIKGKMEDLLKIQVDKYKEKSPE
SIO_010081: K5658_RS23340
subclass of: SO_0000673
so part of: K5658_RS23340
location: complement(9046..9978)
location: region:9046-9978:-1
so has part: feature:9046-9978:-1:exon

WP_221067522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9046-9978:-1:exon

K5658_RS23345
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23345
old locus tag: MishRS11D_46570
so part of: sequence
location: 10060..10920
location: region:10060-10920:1
so has part: feature:10060-10920:1:exon
subclass of: SO_0000010

80837197
type: Gene
SIO_000068: ncbigene

position:10060:1
position: 10060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10920:1
position: 10920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10060-10920:1:exon

K5658_RS23345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23345
old locus tag: MishRS11D_46570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDVYISGPGACSFYCTVKEFMLAVNGVNSDAPENQRNLVFLDDSAEEPSGGAQVCDLEFESPPIDWNVFLWEERTPEKPPLNIVYQTLNAIFKEPPRMEGLDLQEQRLIDIFQALSPEKRSEFMTMAENFAAAAHAPPQPEEKALSALPELPGFRPPPKTQEELKAYGIPLYVKRTDAYEHLKAHYGPWLKHFTPELEHDHLYQYQLAKIDPALVKSINNQITRSARPELIGKKLSDIISGKKHAVNDELEELKEQSPKFVENSSRIAQAARRRSHLVSNCPNASL
SIO_010081: K5658_RS23345
subclass of: SO_0000673
so part of: K5658_RS23345
location: 10060..10920
location: region:10060-10920:1
so has part: feature:10060-10920:1:exon

WP_221067523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10060-10920:1:exon

K5658_RS23350
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS23350
old locus tag: MishRS11D_46580
so part of: sequence
location: 11139..11447
location: region:11139-11447:1
so has part: feature:11139-11447:1:exon
subclass of: SO_0000010

80837198
type: Gene
SIO_000068: ncbigene

position:11139:1
position: 11139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11447:1
position: 11447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11139-11447:1:exon

K5658_RS23350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS23350
old locus tag: MishRS11D_46580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFPANNGFGGSGMPARNPMQQAGYELASAVALLTAFVITPVILDWTGPVVERFVLARYGEDFVGLGSFVFGGCIGYCIFSVAKAFMLLALAAITLRAAFAFV
SIO_010081: K5658_RS23350
subclass of: SO_0000673
so part of: K5658_RS23350
location: 11139..11447
location: region:11139-11447:1
so has part: feature:11139-11447:1:exon

WP_221067524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11139-11447:1:exon

K5658_RS24065
type: Gene
subclass of: SO_0000704
RO_0002162: 1760988
locus tag: K5658_RS24065
old locus tag: MishRS11D_46590
so part of: sequence
location: 11468..11596
location: region:11468-11596:1
so has part: feature:11468-11596:1:exon
subclass of: SO_0000010

80837299
type: Gene
SIO_000068: ncbigene

position:11468:1
position: 11468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11596:1
position: 11596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11468-11596:1:exon

K5658_RS24065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1760988
locus tag: K5658_RS24065
old locus tag: MishRS11D_46590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQKYRPVGTVYEPVKEPSNGSNALGWIVFILFLVAIFGGGN
SIO_010081: K5658_RS24065
subclass of: SO_0000673
so part of: K5658_RS24065
location: 11468..11596
location: region:11468-11596:1
so has part: feature:11468-11596:1:exon

WP_281425997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11468-11596:1:exon