Silurus meridionalis mitochondrion, complete genome.
type: Entry
definition: Silurus meridionalis mitochondrion, complete genome.
sequence version: NC_014866.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_014866.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Silurus meridionalis (southern catfish)
organism: Silurus meridionalis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to HM746661.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16527
topology: circular
so has quality: SO_0000988
location: 1..16527
location: region:1-16527:1
RO_0002162: 175797

NC_014866
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of Silurus meridionalis
author: Liang, H.W.
author: Li, L.
author: Zou, G.W.
author: Hu, G.F.
author: Zhang, Z.W.
author: Li, Z.
author: Luo, X.Z.
author: Zhu, Y.Y.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (06-JAN-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Liang, H.W.
author: Li, L.
author: Zou, G.W.
author: Hu, G.F.
author: Zhang, Z.W.
author: Li, Z.
author: Luo, X.Z.
author: Zhu, Y.Y.
journal: Submitted (09-JUL-2010) Key Lab of Freshwater Fish Germplasm Resources and Biotechnology Certificated by Ministry of Agriculture, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Jianghan North Road #41, Shashi, Jingzhou, Hubei 434000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16527:1
position: 16527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16527:1:source
so part of: sequence
organism: Silurus meridionalis
organelle: mitochondrion
mol type: genomic DNA
common: southern catfish

175797
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Phe
codon recognized: UUC
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 175797
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 71..1024
location: region:71-1024:1
so has part: feature:71-1024:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1024:1
position: 1024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1024:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Val
codon recognized: GUA
so part of: sequence
location: 1025..1096
location: region:1025-1096:1
so has part: feature:1025-1096:1:region

position:1025:1
position: 1025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1096:1
position: 1096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1096:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 175797
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1097..2772
location: region:1097-2772:1
so has part: feature:1097-2772:1:region

position:1097:1
position: 1097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2772:1
position: 2772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1097-2772:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2773..2847
location: region:2773-2847:1
so has part: feature:2773-2847:1:region

position:2773:1
position: 2773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2847:1
position: 2847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2773-2847:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND1
so part of: sequence
location: 2848..3822
location: region:2848-3822:1
so has part: feature:2848-3822:1:exon
subclass of: SO_0000010

10079910
type: Gene
SIO_000068: ncbigene

position:2848:1
position: 2848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3822:1
position: 3822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2848-3822:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLALLMTHVVNPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLITPMLALTLAMMLWAPMPIPHPVTDLNLGMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSIIIFTGGFTLQMFSTTQETIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGATHIPTMPELASANIMTKAALLSMLFLWVRASYPRFRYDQLMHLVWKNFLPMTLALILWHAALPIAFTGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2848..3822
location: region:2848-3822:1
so has part: feature:2848-3822:1:exon

YP_004123337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2848-3822:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Ile
codon recognized: AUC
so part of: sequence
location: 3824..3895
location: region:3824-3895:1
so has part: feature:3824-3895:1:region

position:3824:1
position: 3824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3895:1
position: 3895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3824-3895:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Gln
codon recognized: CAA
so part of: sequence
location: complement(3895..3965)
location: region:3895-3965:-1
so has part: feature:3895-3965:-1:region

position:3895:-1
position: 3895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3965:-1
position: 3965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3895-3965:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Met
codon recognized: AUG
so part of: sequence
location: 3965..4033
location: region:3965-4033:1
so has part: feature:3965-4033:1:region

position:3965:1
position: 3965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4033:1
position: 4033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3965-4033:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND2
so part of: sequence
location: 4034..5078
location: region:4034-5078:1
so has part: feature:4034-5078:1:exon
subclass of: SO_0000010

10079898
type: Gene
SIO_000068: ncbigene

position:4034:1
position: 4034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5078:1
position: 5078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4034-5078:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5078,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPYVITILLSSLGLGTTLTFMSSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFLAQAAAAATILFASTINAWTTGEWDICCLTHPIATTLTIMALALKVGLAPMHFWMPPVMQGLDLPTGLIMATWQKLAPFALIIQIAPFTNPQVITALGLLSVFIGGWGGLNQTQLRKILAYSSIAHLGWMIIIVQFKPQLTILALVTYILMTAAIFLTFKMTSATKINTLATSWSKAPLLTATAALSLLSLGGLPPLTGFMPKWLILQELTTQNLPLTATMAALSALLSLYFYLRLCYSMTLTISPNTNNASTPWRLQSTQNTMPLAAFTASTLLLLPLTPLAQALVN
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4034..5078
location: region:4034-5078:1
so has part: feature:4034-5078:1:exon

YP_004123338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4034-5078:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Trp
codon recognized: UGA
so part of: sequence
location: 5079..5149
location: region:5079-5149:1
so has part: feature:5079-5149:1:region

position:5079:1
position: 5079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5149:1
position: 5149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5149:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Ala
codon recognized: GCA
so part of: sequence
location: complement(5152..5220)
location: region:5152-5220:-1
so has part: feature:5152-5220:-1:region

position:5152:-1
position: 5152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5220:-1
position: 5220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5152-5220:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Asn
codon recognized: AAC
so part of: sequence
location: complement(5222..5294)
location: region:5222-5294:-1
so has part: feature:5222-5294:-1:region

position:5222:-1
position: 5222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5294:-1
position: 5294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5222-5294:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Cys
codon recognized: UGC
so part of: sequence
location: complement(5329..5394)
location: region:5329-5394:-1
so has part: feature:5329-5394:-1:region

position:5329:-1
position: 5329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5394:-1
position: 5394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5329-5394:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Tyr
codon recognized: UAC
so part of: sequence
location: complement(5399..5468)
location: region:5399-5468:-1
so has part: feature:5399-5468:-1:region

position:5399:-1
position: 5399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5468:-1
position: 5468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5399-5468:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: COX1
so part of: sequence
location: 5470..7020
location: region:5470-7020:1
so has part: feature:5470-7020:1:exon
subclass of: SO_0000010

10079899
type: Gene
SIO_000068: ncbigene

position:5470:1
position: 5470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7020:1
position: 7020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5470-7020:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELAQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTMHDTWTKIHFGTMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYSLWNIVSSIGSLISLVAVVMFLYILWEAFTAKREVLSVELTATNVEWLHGCPPPYHTFEEPAFVQVQTN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5470..7020
location: region:5470-7020:1
so has part: feature:5470-7020:1:exon

YP_004123339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5470-7020:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7021..7091)
location: region:7021-7091:-1
so has part: feature:7021-7091:-1:region

position:7021:-1
position: 7021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7091:-1
position: 7091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7021-7091:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Asp
codon recognized: GAC
so part of: sequence
location: 7096..7167
location: region:7096-7167:1
so has part: feature:7096-7167:1:region

position:7096:1
position: 7096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7167:1
position: 7167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7096-7167:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: COX2
so part of: sequence
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon
subclass of: SO_0000010

10079900
type: Gene
SIO_000068: ncbigene

position:7181:1
position: 7181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7871:1
position: 7871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7871,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVVMVTTKLTNKYILDSQEIEVVWTILPAVILIMIALPSLRILYLMDEVNDPHLTVKAMGHQWYWSYEYTDYENLAFDSYMVPTQDLAPGQFRLLETDHRMVVPMESPVRVLVSAEDVLHSWAVPALGIKLDAVPGRLNQTSFITSRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon

YP_004123340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Lys
codon recognized: AAA
so part of: sequence
location: 7872..7945
location: region:7872-7945:1
so has part: feature:7872-7945:1:region

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7945:1
position: 7945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7872-7945:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ATP8
so part of: sequence
location: 7947..8114
location: region:7947-8114:1
so has part: feature:7947-8114:1:exon
subclass of: SO_0000010

10079901
type: Gene
SIO_000068: ncbigene

position:7947:1
position: 7947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8114:1
position: 8114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7947-8114:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLIFLTVIPNKVLNHTFTNEVTALNAEELKSDTWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7947..8114
location: region:7947-8114:1
so has part: feature:7947-8114:1:exon

YP_004123341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7947-8114:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ATP6
so part of: sequence
location: 8105..8788
location: region:8105-8788:1
so has part: feature:8105-8788:1:exon
subclass of: SO_0000010

10079902
type: Gene
SIO_000068: ncbigene

position:8105:1
position: 8105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8788:1
position: 8788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8105-8788:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MALNLFDQFMSPTHLGVPLIAIALTLPWILVPSPTNRYQNNRLISLQNWFIKTFTHQLLMPLNQGGHKWAMILASLMIFILTLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTVALGHLLPEGTPILLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLMPMMTTVAALTAVLLVLLTLLEVAVAIIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8105..8788
location: region:8105-8788:1
so has part: feature:8105-8788:1:exon

YP_004123342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8105-8788:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: COX3
so part of: sequence
location: 8788..9571
location: region:8788-9571:1
so has part: feature:8788-9571:1:exon
subclass of: SO_0000010

10079903
type: Gene
SIO_000068: ncbigene

position:9571:1
position: 9571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8788-9571:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9571,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTILLTLGLVLLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGERKQAIQSLILTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLATCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8788..9571
location: region:8788-9571:1
so has part: feature:8788-9571:1:exon

YP_004123343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8788-9571:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Gly
codon recognized: GGA
so part of: sequence
location: 9572..9644
location: region:9572-9644:1
so has part: feature:9572-9644:1:region

position:9572:1
position: 9572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9644:1
position: 9644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9572-9644:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND3
so part of: sequence
location: 9645..9993
location: region:9645-9993:1
so has part: feature:9645-9993:1:exon
subclass of: SO_0000010

10079904
type: Gene
SIO_000068: ncbigene

position:9645:1
position: 9645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9993:1
position: 9993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9645-9993:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9993,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLIMTIMLITTALSTILALVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGNQLPDPTYTLLYAAAVLILLTLGLIYEWMQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9645..9993
location: region:9645-9993:1
so has part: feature:9645-9993:1:exon

YP_004123344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9645-9993:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Arg
so part of: sequence
location: 9994..10064
location: region:9994-10064:1
so has part: feature:9994-10064:1:region

position:9994:1
position: 9994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10064:1
position: 10064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9994-10064:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND4L
so part of: sequence
location: 10065..10361
location: region:10065-10361:1
so has part: feature:10065-10361:1:exon
subclass of: SO_0000010

10079905
type: Gene
SIO_000068: ncbigene

position:10065:1
position: 10065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10361:1
position: 10361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10065-10361:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVYFSFTSAFTLGLLGLAFHRTHLLSALLCLEGMMLSLFIALALWMLQLESTAFSAAPILLLAFSACEASAGLALLVATARTHGTDRLQALSLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10065..10361
location: region:10065-10361:1
so has part: feature:10065-10361:1:exon

YP_004123345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10065-10361:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND4
so part of: sequence
location: 10355..11735
location: region:10355-11735:1
so has part: feature:10355-11735:1:exon
subclass of: SO_0000010

10079906
type: Gene
SIO_000068: ncbigene

position:10355:1
position: 10355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11735:1
position: 11735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10355-11735:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11735,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPTIMLLPTIWFSPPKWLWVTSTLQSLLIALLSLTWVKWCSETGWTSSNLYMGTDPLSTPLLILTCWLLPLMILASQNHIKTEPISRQRNYITLLASLQIFLIMAFGATEIIMFYVMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLLHQNTNTLSMLIIQYSHPLILNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAILLKLGGYGMMRMMVILDPLSKDLVYPIIALALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILARGLQAIFPLTATWWFVSNLANLALPPLPNLMGELVIITAMFNWSPLTLVLTGTGTLITAAYSLYLFLMTQRGPLPQHIINLQPFHTREHLLMTLHLLPVLLLILKPEIMWGWWY
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10355..11735
location: region:10355-11735:1
so has part: feature:10355-11735:1:exon

YP_004123346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10355-11735:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-His
codon recognized: CAC
so part of: sequence
location: 11736..11805
location: region:11736-11805:1
so has part: feature:11736-11805:1:region

position:11736:1
position: 11736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11805:1
position: 11805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11736-11805:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11806..11874
location: region:11806-11874:1
so has part: feature:11806-11874:1:region

position:11806:1
position: 11806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11874:1
position: 11874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11806-11874:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11875..11947
location: region:11875-11947:1
so has part: feature:11875-11947:1:region

position:11875:1
position: 11875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11947:1
position: 11947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11875-11947:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND5
so part of: sequence
location: 11948..13774
location: region:11948-13774:1
so has part: feature:11948-13774:1:exon
subclass of: SO_0000010

10079907
type: Gene
SIO_000068: ncbigene

position:11948:1
position: 11948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13774:1
position: 13774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11948-13774:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MVNIIMTTTLLLTLTILILPLMLTLHPKPLNQDWAMKHAKTAVSLAFLISTIPLIIFLDQGTESIITTWSWMNITSFDINISFKFDHYSLIFTPIALYVTWSILEFASWYMHADPNLNRFFKYLLLFLVAMIILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRADANTAALQAVLYNRVGDIGLILAMAWIAMNLNSWEIPQIFLMSKNLDMTLPSMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMENNQLALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHKLMPFTSSCLIIGSLALTGTPFLTGFFSKDAIIEALNTSHLNAWALALTLLATSFTAVYSLRVVFFVTMGSPRFSALSPINENHPEMVASIQRLAWGSIIAGLIITSNFLPSKTPVMTMPPSLKLAALMVTITGLIIALALATAATKQIKIMPALTPHNFSNMLGFFPPIIHRSIPKFSLALGKQATKLDRQWMETGPKGFLPLHASLSSMFDNIDTNIVKVYLAFYLISTALAIILLTLL
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11948..13774
location: region:11948-13774:1
so has part: feature:11948-13774:1:exon

YP_004123347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11948-13774:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: ND6
so part of: sequence
location: complement(13771..14289)
location: region:13771-14289:-1
so has part: feature:13771-14289:-1:exon
subclass of: SO_0000010

10079908
type: Gene
SIO_000068: ncbigene

position:13771:-1
position: 13771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14289:-1
position: 14289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13771-14289:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYFLNLLLLCLVVGLVGVASNPAPYFAALGLAMAAGVGCGILVGHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPETWGAGSVKTYVLMYLLGVGAAMVWFWGEYGDCWIVVDEFKEFFVMRGDIGGVSLMYFVGGGMLVVCAWVLLLCLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13771..14289)
location: region:13771-14289:-1
so has part: feature:13771-14289:-1:exon

YP_004123348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13771-14289:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Glu
codon recognized: GAA
so part of: sequence
location: complement(14290..14358)
location: region:14290-14358:-1
so has part: feature:14290-14358:-1:region

position:14290:-1
position: 14290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14358:-1
position: 14358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14290-14358:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 175797
gene: CYTB
so part of: sequence
location: 14360..15497
location: region:14360-15497:1
so has part: feature:14360-15497:1:exon
subclass of: SO_0000010

10079909
type: Gene
SIO_000068: ncbigene

position:14360:1
position: 14360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15497:1
position: 15497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14360-15497:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 175797
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15497,aa:TERM)
transl table: 2
product: cytochrome b
translation: MVTRKTHPLFKIINNALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAFHFILPFAIVAATLLHALFLHETGSNNPTGLNSDTDKISFHPYFSYKDLLGFIILLTALTALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILVLMIVPLLHTSKQQGLTFRPLAQLLFWALVADVLILTWIGGMPVEHPFVIIGQVASILYFSLFLILNPLAGLLENKYMNFN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14360..15497
location: region:14360-15497:1
so has part: feature:14360-15497:1:exon

YP_004123349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14360-15497:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Thr
codon recognized: ACA
so part of: sequence
location: 15498..15568
location: region:15498-15568:1
so has part: feature:15498-15568:1:region

position:15498:1
position: 15498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15568:1
position: 15568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15498-15568:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 175797
product: tRNA-Pro
codon recognized: CCA
so part of: sequence
location: complement(15567..15636)
location: region:15567-15636:-1
so has part: feature:15567-15636:-1:region

position:15567:-1
position: 15567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15636:-1
position: 15636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15567-15636:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 175797
so part of: sequence
location: 15637..16527
location: region:15637-16527:1
so has part: feature:15637-16527:1:region

position:15637:1
position: 15637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15637-16527:1:region