Fluviibacter phosphoraccumulans strain ICHIAU1 plasmid pICHIAU1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Rhodocyclales; Fluviibacteraceae; Fluviibacter.
Complete Genome and Plasmid Sequences of Three Fluviibacter phosphoraccumulans Polyphosphate-Accumulating Bacterioplankton Strains Isolated from Surface River Water
Microbiol Resour Announc 10 (9), e01474-20 (2021)
DOI:10.1128/MRA.01474-20 Publication Status: Online-Only
Fluviibacter phosphoraccumulans gen. nov., sp. nov., a polyphosphate-accumulating bacterium of Fluviibacteraceae fam. nov., isolated from surface river water
Submitted (23-JAN-2020) Contact:Keiji Watanabe Center for Environmental Science in Saitama, Water Environment Group; Kamitanadare914, Kazo, Saitama 347-0115, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP022346.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Coverage :: 633x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 10:15:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,395\nCDSs (total) :: 2,341\nGenes (coding) :: 2,325\nCDSs (with protein) :: 2,325\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 5 of 16\nPseudo Genes (incomplete) :: 11 of 16\nPseudo Genes (internal stop) :: 2 of 16\nPseudo Genes (multiple problems) :: 2 of 16\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Japan:Saitama, Fukaya, Koyama River, Ichino Bridge
COORDINATES: similar to AA sequence:RefSeq:WP_019998531.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_020227807.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000904895.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138082.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010643051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009665164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012290051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512412.1
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004514727.1
COORDINATES: protein motif:HMM:NF039733.1