Fructilactobacillus ixorae strain Ru20-1 plasmid punnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Fructilactobacillus.
Submitted (18-MAY-2022) Wine Science, The University of Adelaide, PMB 1, Glen Osmond, South Australia 5064, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP097479.1.\nBacteria and source DNA available from BCCM/LMG 29008.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-DEC-2020\nAssembly Method :: flye v. 2.7.1\nAssembly Name :: F_ixorae_Final\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/07/2023 04:23:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,439\nCDSs (total) :: 1,358\nGenes (coding) :: 1,342\nCDSs (with protein) :: 1,342\nGenes (RNA) :: 81\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 7 of 16\nPseudo Genes (incomplete) :: 5 of 16\nPseudo Genes (internal stop) :: 11 of 16\nPseudo Genes (multiple problems) :: 6 of 16\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0046798 - viral portal complex [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0051027 - DNA transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025623.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015802.2
COORDINATES: similar to AA sequence:RefSeq:WP_002815185.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023110.2
COORDINATES: protein motif:HMM:NF040129.1
COORDINATES: protein motif:HMM:NF017520.2
COORDINATES: protein motif:HMM:NF018329.2
COORDINATES: protein motif:HMM:NF021229.2
COORDINATES: protein motif:HMM:NF021218.2
COORDINATES: protein motif:HMM:NF013357.2
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003593967.1
COORDINATES: protein motif:HMM:NF019191.2
COORDINATES: protein motif:HMM:NF012920.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005658536.1
phage regulatory protein/antirepressor Ant
COORDINATES: protein motif:HMM:NF018751.2
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_014939036.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002468137.1
conserved phage C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF018101.2
COORDINATES: protein motif:HMM:NF028094.2
COORDINATES: similar to AA sequence:RefSeq:WP_008749868.1
COORDINATES: protein motif:HMM:NF023181.2
COORDINATES: protein motif:HMM:TIGR01637.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
ArpU family phage packaging/lysis transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002935322.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018369207.1
COORDINATES: similar to AA sequence:RefSeq:WP_020457818.1
COORDINATES: similar to AA sequence:RefSeq:WP_003698210.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015550.2
GO:0051276 - chromosome organization [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01547.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019168271.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein