Catenovulum sediminis strain WS1-A chromosome 2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum.
Submitted (12-JUL-2019) Department of Biological Sciences, Myongji University, 116 Myongjiro, Yongin, Gyeonggido 17058, Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP041661.1.\nBacteria and source DNA available from Chang-Ro Lee.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nSequencing Technology :: PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 03:37:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,094\nCDSs (total) :: 4,010\nGenes (coding) :: 3,951\nCDSs (with protein) :: 3,951\nGenes (RNA) :: 84\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 40 of 59\nPseudo Genes (incomplete) :: 21 of 59\nPseudo Genes (internal stop) :: 7 of 59\nPseudo Genes (multiple problems) :: 8 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015896.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01026.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013664.2
flagellar M-ring protein FliF C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00205.1
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:NF018168.2
flagellar basal body rod C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014206.2
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF014195.2
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:NF024544.2
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: protein motif:HMM:TIGR03506.1
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:NF012973.2
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0071978 - bacterial-type flagellum-dependent swarming motility [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013479.2
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: protein motif:HMM:NF013478.2
COORDINATES: protein motif:HMM:NF013480.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558331.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017446869.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015067995.1
protein adenylyltransferase SelO family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006794751.1
COORDINATES: similar to AA sequence:RefSeq:WP_012154898.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024546.2
COORDINATES: similar to AA sequence:RefSeq:WP_006006571.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012519915.1
COORDINATES: similar to AA sequence:RefSeq:WP_011233564.1
COORDINATES: similar to AA sequence:RefSeq:WP_011233563.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016953891.1
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF019265.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_016953889.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583011.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376622.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953886.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016709596.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001107720.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012518664.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019026896.1
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011771875.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_017446677.1
COORDINATES: similar to AA sequence:RefSeq:WP_013754619.1
COORDINATES: similar to AA sequence:RefSeq:WP_011573686.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008608811.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF024742.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008127058.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: similar to AA sequence:RefSeq:WP_006005532.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF025943.2
chondroitinase-B domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010558057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014948493.1
COORDINATES: similar to AA sequence:RefSeq:WP_014978507.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011328425.1
COORDINATES: protein motif:HMM:TIGR01782.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013754675.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016401759.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_017025439.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: similar to AA sequence:RefSeq:WP_016953900.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014976831.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_016956516.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008301803.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008131444.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008301796.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019301 - rhamnose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007992179.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:NF027309.2
COORDINATES: protein motif:HMM:NF025793.2
GO:0052717 - tRNA-specific adenosine-34 deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008305872.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446971.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446965.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446951.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446950.1
COORDINATES: similar to AA sequence:RefSeq:WP_011573704.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446947.1
c-type cytochrome domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446942.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016955626.1
COORDINATES: protein motif:HMM:TIGR01965.1
COORDINATES: similar to AA sequence:RefSeq:WP_017443871.1
COORDINATES: protein motif:HMM:NF021431.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008846001.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956990.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076612163.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039368.1
COORDINATES: similar to AA sequence:RefSeq:WP_009836491.1
COORDINATES: protein motif:HMM:NF027117.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558017.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010363480.1
COORDINATES: protein motif:HMM:NF016847.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016709254.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376611.1
COORDINATES: similar to AA sequence:RefSeq:WP_013752931.1
sialic acid TRAP transporter substrate-binding protein SiaP
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_016957851.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446842.1
COORDINATES: similar to AA sequence:RefSeq:WP_014951360.1
COORDINATES: similar to AA sequence:RefSeq:WP_013786003.1
COORDINATES: protein motif:HMM:NF026913.2
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016709252.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446918.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446794.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446793.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446787.1
COORDINATES: similar to AA sequence:RefSeq:WP_010178024.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: protein motif:HMM:NF014502.2
COORDINATES: protein motif:HMM:NF024770.2
COORDINATES: similar to AA sequence:RefSeq:WP_012326508.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016706757.1
histidine kinase sensor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007642373.1
COORDINATES: similar to AA sequence:RefSeq:WP_016955738.1
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:NF023232.2
COORDINATES: similar to AA sequence:RefSeq:WP_017445923.1
COORDINATES: protein motif:HMM:NF033591.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956093.1
COORDINATES: protein motif:HMM:NF025134.2
COORDINATES: similar to AA sequence:RefSeq:WP_008842542.1
TonB-dependent receptor plug domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017445922.1
COORDINATES: protein motif:HMM:NF019365.2
GO:0015926 - glucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012211.1
COORDINATES: protein motif:HMM:NF012698.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011234660.1
COORDINATES: protein motif:HMM:NF014850.2
COORDINATES: similar to AA sequence:RefSeq:WP_016955487.1
GO:0000030 - mannosyltransferase activity [Evidence IEA]
GO:0006493 - protein O-linked glycosylation [Evidence IEA]
phospholipid carrier-dependent glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014949341.1
COORDINATES: protein motif:HMM:NF039989.1
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF019260.2
COORDINATES: similar to AA sequence:RefSeq:WP_018984143.1
GO:0046559 - alpha-glucuronidase activity [Evidence IEA]
GO:0045493 - xylan catabolic process [Evidence IEA]
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016953963.1
GO:0004565 - beta-galactosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007106368.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953962.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - monoatomic cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: protein motif:HMM:NF016693.2
COORDINATES: similar to AA sequence:RefSeq:WP_012323779.1
COORDINATES: protein motif:HMM:NF012671.2
COORDINATES: protein motif:HMM:NF018928.2
COORDINATES: similar to AA sequence:RefSeq:WP_008843723.1
COORDINATES: similar to AA sequence:RefSeq:WP_018983732.1
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0046373 - L-arabinose metabolic process [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: protein motif:HMM:NF014116.2
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
carbohydrate binding domain-containing protein
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: similar to AA sequence:RefSeq:WP_016954134.1
COORDINATES: protein motif:HMM:NF012673.2
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017444476.1
COORDINATES: protein motif:HMM:NF012801.2
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_016957884.1
GO:2001070 - starch binding [Evidence IEA]
carbohydrate-binding module family 20 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016956596.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953873.1
COORDINATES: similar to AA sequence:RefSeq:WP_006002348.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002360769.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: protein motif:HMM:NF024886.2
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
transposase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611969.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017446808.1
COORDINATES: similar to AA sequence:RefSeq:WP_019027340.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446420.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF016230.2
COORDINATES: similar to AA sequence:RefSeq:WP_017446998.1
COORDINATES: similar to AA sequence:RefSeq:WP_007984590.1
COORDINATES: similar to AA sequence:RefSeq:WP_014997057.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376636.1
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: similar to AA sequence:RefSeq:WP_017444841.1
COORDINATES: protein motif:HMM:NF037292.2
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: similar to AA sequence:RefSeq:WP_019029356.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_017446648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585185.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585184.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375164.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446900.1
COORDINATES: similar to AA sequence:RefSeq:WP_017444845.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957859.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024777.2
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF013487.2
COORDINATES: protein motif:HMM:NF019040.2
COORDINATES: protein motif:HMM:NF019223.2
DUF1549 and DUF1553 domain-containing protein
COORDINATES: protein motif:HMM:NF019219.2
COORDINATES: protein motif:HMM:TIGR03949.1
class IIb bacteriocin, lactobin A/cerein 7B family
COORDINATES: similar to AA sequence:RefSeq:WP_017445612.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446761.1
COORDINATES: similar to AA sequence:RefSeq:WP_007984544.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957833.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015445.2
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018984145.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984146.1
COORDINATES: similar to AA sequence:RefSeq:WP_013754886.1
D-galactonate dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446763.1
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: similar to AA sequence:RefSeq:WP_017446765.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446766.1
COORDINATES: protein motif:HMM:NF012622.2
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
dockerin type I domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446857.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_017443955.1
COORDINATES: similar to AA sequence:RefSeq:WP_011497050.1
COORDINATES: protein motif:HMM:NF016232.2
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014980775.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014705957.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_008139493.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012592961.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000588506.1
COORDINATES: protein motif:HMM:NF014851.2
COORDINATES: similar to AA sequence:RefSeq:WP_013754607.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446669.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446670.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446671.1
PSD1 and planctomycete cytochrome C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446673.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446674.1
COORDINATES: similar to AA sequence:RefSeq:WP_017444855.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446770.1
COORDINATES: similar to AA sequence:RefSeq:WP_017445180.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446772.1
COORDINATES: similar to AA sequence:RefSeq:WP_008305283.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446783.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446784.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446664.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956128.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612036.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956129.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956090.1
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_017447000.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612135.1
COORDINATES: similar to AA sequence:RefSeq:WP_011070736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011071076.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016876.2
COORDINATES: similar to AA sequence:RefSeq:WP_002958032.1
putative addiction module antidote protein
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012518530.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014108247.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000095578.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: protein motif:HMM:NF021255.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF014466.2
GO:0005509 - calcium ion binding [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
thrombospondin type 3 repeat-containing protein
COORDINATES: protein motif:HMM:NF024545.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: protein motif:HMM:NF018319.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_008114248.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0098561 - methyl accepting chemotaxis protein complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446578.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017447001.1
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:TIGR00016.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024799.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011045342.1
COORDINATES: similar to AA sequence:RefSeq:WP_016955798.1
COORDINATES: similar to AA sequence:RefSeq:WP_016706356.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_017446423.1
COORDINATES: similar to AA sequence:RefSeq:WP_011575104.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446564.1
COORDINATES: similar to AA sequence:RefSeq:WP_007986439.1
COORDINATES: similar to AA sequence:RefSeq:WP_011784790.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953859.1
COORDINATES: protein motif:HMM:NF013885.2
GO:0015293 - symporter activity [Evidence IEA]
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016957577.1
COORDINATES: similar to AA sequence:RefSeq:WP_011575102.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017446985.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017445894.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446509.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF007377.0
type II toxin-antitoxin system YafO family toxin
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019443218.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017222179.1
COORDINATES: protein motif:HMM:NF013412.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016404033.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016954652.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043446.1
GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase
COORDINATES: similar to AA sequence:RefSeq:WP_010388651.1
COORDINATES: similar to AA sequence:RefSeq:WP_007616901.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_007579871.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016709894.1
COORDINATES: similar to AA sequence:RefSeq:WP_011233769.1
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007106396.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301663.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957865.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301665.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016957863.1
COORDINATES: similar to AA sequence:RefSeq:WP_006990522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068420.1
COORDINATES: similar to AA sequence:RefSeq:WP_016709219.1
COORDINATES: similar to AA sequence:RefSeq:WP_019441015.1
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_016954657.1
OsmC domain/YcaO domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014107161.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014979371.1
COORDINATES: similar to AA sequence:RefSeq:WP_008306117.1
COORDINATES: similar to AA sequence:RefSeq:WP_016709232.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953895.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446592.1
COORDINATES: similar to AA sequence:RefSeq:WP_004585936.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446590.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957852.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446586.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376609.1
COORDINATES: similar to AA sequence:RefSeq:WP_013753611.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446582.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_016953898.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_019029101.1
COORDINATES: similar to AA sequence:RefSeq:WP_017444836.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446560.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF033559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007420618.1
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
COORDINATES: protein motif:HMM:NF012836.2
COORDINATES: protein motif:HMM:NF025082.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF009438.0
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: protein motif:HMM:NF013236.2
FliM/FliN family flagellar motor switch protein
FliM/FliN family flagellar motor C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006071221.1
COORDINATES: similar to AA sequence:RefSeq:WP_007987300.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446558.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957584.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446545.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017447002.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953892.1
COORDINATES: similar to AA sequence:RefSeq:WP_011575418.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_017446884.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446885.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446836.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF002331.0
COORDINATES: protein motif:HMM:NF019880.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF024860.2