Echeneis naucrates mitochondrion, complete genome.
type: Entry
definition: Echeneis naucrates mitochondrion, complete genome.
sequence version: NC_022508.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_022508.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Echeneis naucrates (live sharksucker)
organism: Echeneis naucrates
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis.
reference: 1
references: 24023883
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AB355905.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16612
topology: circular
so has quality: SO_0000988
location: 1..16612
location: region:1-16612:1
RO_0002162: 173247

NC_022508
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Evolutionary origin of the scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families
author: Miya, M.
author: Friedman, M.
author: Satoh, T.P.
author: Takeshima, H.
author: Sado, T.
author: Iwasaki, W.
author: Yamanoue, Y.
author: Nakatani, M.
author: Mabuchi, K.
author: Inoue, J.G.
author: Poulsen, J.Y.
author: Fukunaga, T.
author: Sato, Y.
author: Nishida, M.
journal: PLoS ONE 8 (9), E73535 (2013)
pubmed: 24023883
comments: DOI:10.1371/journal.pone.0073535 Publication Status: Online-Only

24023883
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (26-SEP-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Miya, M.
journal: Submitted (17-AUG-2007) Natural History Museum & Institute, Chiba, Department of Zoology; 955-2 Aoba-cho, Chuo-ku, Chiba, Chiba 260-8682, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16612:1
position: 16612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16612:1:source
so part of: sequence
organism: Echeneis naucrates
organelle: mitochondrion
mol type: genomic DNA

173247
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 173247
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1016
location: region:69-1016:1
so has part: feature:69-1016:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1016:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Val
so part of: sequence
location: 1017..1088
location: region:1017-1088:1
so has part: feature:1017-1088:1:region

position:1017:1
position: 1017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1017-1088:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 173247
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1089..2793
location: region:1089-2793:1
so has part: feature:1089-2793:1:region

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2793:1
position: 2793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089-2793:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Leu
so part of: sequence
location: 2794..2868
location: region:2794-2868:1
so has part: feature:2794-2868:1:region

position:2794:1
position: 2794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2868:1
position: 2868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2794-2868:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND1
so part of: sequence
location: 2869..3843
location: region:2869-3843:1
so has part: feature:2869-3843:1:exon
subclass of: SO_0000010

17099362
type: Gene
SIO_000068: ncbigene

position:2869:1
position: 2869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3843:1
position: 3843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2869-3843:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISTLLTHIINPLTFIVPVLLAVAFLTLLERKVLGYMQHRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSASSPTLFILAPILALTLALTLWAPLPLPYPVIDLNLGILFILALSSLAVYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLNIIIFTGGFTLQTFNTAQESVWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASHIPTLPELTATNLMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPLAFAGLPPQF
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2869..3843
location: region:2869-3843:1
so has part: feature:2869-3843:1:exon

YP_008593756.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2869-3843:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Ile
so part of: sequence
location: 3849..3918
location: region:3849-3918:1
so has part: feature:3849-3918:1:region

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3918:1
position: 3918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3849-3918:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Gln
so part of: sequence
location: complement(3917..3987)
location: region:3917-3987:-1
so has part: feature:3917-3987:-1:region

position:3917:-1
position: 3917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3987:-1
position: 3987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3917-3987:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Met
so part of: sequence
location: 3987..4055
location: region:3987-4055:1
so has part: feature:3987-4055:1:region

position:3987:1
position: 3987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4055:1
position: 4055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3987-4055:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND2
so part of: sequence
location: 4056..5101
location: region:4056-5101:1
so has part: feature:4056-5101:1:exon
subclass of: SO_0000010

17099355
type: Gene
SIO_000068: ncbigene

position:4056:1
position: 4056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5101:1
position: 5101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4056-5101:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5100..5101,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLILTILLFALGLGTTITFMSSHWLFAWMGLEINTLAIIPLMTQHHHPRSTEAGTKYFLAQATAAAMLLFASVTNAWLTGQWDILQMSHPLPTTMITLALALKIGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQINPTNPTVLIMLGITSTLVGGWGGLNQTQLRKILAYSSIAHLGWMALILPFYPSLTLLALLTYLIMTLSTFLVFKLNKATNINTLAISWSKTPIITTLTPLLLLSLGGLPPLTGFMPKWFILQELTKQNLPLLATFTALTALLSLYFYLRLSYSMTLTMFPNNLMGTTPWRFFTQSTSLPLALSISMAIALLPLAPAMMALLTP
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4056..5101
location: region:4056-5101:1
so has part: feature:4056-5101:1:exon

YP_008593757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4056-5101:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Trp
so part of: sequence
location: 5102..5171
location: region:5102-5171:1
so has part: feature:5102-5171:1:region

position:5102:1
position: 5102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5171:1
position: 5171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5102-5171:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Ala
so part of: sequence
location: complement(5173..5241)
location: region:5173-5241:-1
so has part: feature:5173-5241:-1:region

position:5173:-1
position: 5173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5241:-1
position: 5241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5173-5241:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Asn
so part of: sequence
location: complement(5243..5315)
location: region:5243-5315:-1
so has part: feature:5243-5315:-1:region

position:5243:-1
position: 5243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5315:-1
position: 5315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5243-5315:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Cys
so part of: sequence
location: complement(5353..5417)
location: region:5353-5417:-1
so has part: feature:5353-5417:-1:region

position:5353:-1
position: 5353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5417:-1
position: 5417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5353-5417:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Tyr
so part of: sequence
location: complement(5418..5487)
location: region:5418-5487:-1
so has part: feature:5418-5487:-1:region

position:5418:-1
position: 5418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5487:-1
position: 5487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5418-5487:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5489..7039
location: region:5489-7039:1
so has part: feature:5489-7039:1:exon
subclass of: SO_0000010

17099356
type: Gene
SIO_000068: ncbigene

position:5489:1
position: 5489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7039:1
position: 7039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5489-7039:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLTSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPAAASMYQLPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTAFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYCGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATIHGGDIKWETPFLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIAGGFVHWFPLFTGYTLHETWTKVHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLVSLVAVVLLLFIIWEAFVAKREVLSVEMTHLNVEWLHGCPPPYHTFEEPAFVQIRSN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5489..7039
location: region:5489-7039:1
so has part: feature:5489-7039:1:exon

YP_008593758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5489-7039:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Ser
so part of: sequence
location: complement(7040..7110)
location: region:7040-7110:-1
so has part: feature:7040-7110:-1:region

position:7040:-1
position: 7040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7110:-1
position: 7110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7040-7110:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Asp
so part of: sequence
location: 7114..7181
location: region:7114-7181:1
so has part: feature:7114-7181:1:region

position:7114:1
position: 7114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7181:1
position: 7181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7114-7181:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7188..7878
location: region:7188-7878:1
so has part: feature:7188-7878:1:exon
subclass of: SO_0000010

17099352
type: Gene
SIO_000068: ncbigene

position:7188:1
position: 7188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7878:1
position: 7878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7188-7878:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
alternative label: COII
gene: COX2
gene synonym: COII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7878,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPAQLGFQDAASPLMEELLRFHDHALMVIFLISAFVFYVIIAMITAKTTDMLVLDSQVVEIIWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVIPMDSPVRVLISAEDVLHSWAVPSLGVKVDAVPGRLNQATFIVNRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWTSLLIEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7188..7878
location: region:7188-7878:1
so has part: feature:7188-7878:1:exon

YP_008593759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7188-7878:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Lys
so part of: sequence
location: 7879..7954
location: region:7879-7954:1
so has part: feature:7879-7954:1:region

position:7879:1
position: 7879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7954:1
position: 7954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7879-7954:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ATP8
so part of: sequence
location: 7956..8123
location: region:7956-8123:1
so has part: feature:7956-8123:1:exon
subclass of: SO_0000010

17099353
type: Gene
SIO_000068: ncbigene

position:7956:1
position: 7956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8123:1
position: 8123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7956-8123:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILIFTWLVFLTIIPPKVLAHQFPNDPTLQSTQKPTTDPWIWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7956..8123
location: region:7956-8123:1
so has part: feature:7956-8123:1:exon

YP_008593760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7956-8123:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ATP6
so part of: sequence
location: 8114..8796
location: region:8114-8796:1
so has part: feature:8114-8796:1:exon
subclass of: SO_0000010

17099351
type: Gene
SIO_000068: ncbigene

position:8114:1
position: 8114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8796:1
position: 8796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8114-8796:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8795..8796,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTMLGIPLMALALLLPWILFPTPSTRWLNNRLLTLQNSTIGQYTQQLLLPINQGGHKWATLLTSLMIFLITINMLGLLPYTFTPTTQLSMNMGLAVPLWLATVIIGMRNQPTHSLGHLLPEGTPPLLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLMQLIATAAFVLLPLMPTVAILTSILLVLLTLLEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8114..8796
location: region:8114-8796:1
so has part: feature:8114-8796:1:exon

YP_008593761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8114-8796:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8797..9581
location: region:8797-9581:1
so has part: feature:8797-9581:1:exon
subclass of: SO_0000010

17099350
type: Gene
SIO_000068: ncbigene

position:8797:1
position: 8797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9581:1
position: 9581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8797-9581:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
alternative label: COIII
gene: COX3
gene synonym: COIII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9580..9581,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHPYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTILMTLGTVLLVLTICQWWRDVVREGTFQGHHTPPVQKGLRYGMILFITSEVLFFAGFFWAFYHSSLAPTPELGGFWPPAGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGDRKQAIHSLTLTILLGGYFTFLQALEYYEAPFTIADGVYGATFFVATGFHGLHVIIGSTFLAVCLHRQIRHHFTSTHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8797..9581
location: region:8797-9581:1
so has part: feature:8797-9581:1:exon

YP_008593762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8797-9581:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Gly
so part of: sequence
location: 9582..9652
location: region:9582-9652:1
so has part: feature:9582-9652:1:region

position:9582:1
position: 9582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9652:1
position: 9652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9652:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND3
so part of: sequence
location: 9653..10001
location: region:9653-10001:1
so has part: feature:9653-10001:1:exon
subclass of: SO_0000010

17099354
type: Gene
SIO_000068: ncbigene

position:9653:1
position: 9653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10001:1
position: 10001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9653-10001:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10001,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNIVMMILLIAIALSTVLAIVSFWLPQMNPDSEKLSPFECGFDPLGSARLPFSLQFFLVAILFLLFDLEIALLLPLPWGDQLDNPLLTFTWASLVLLLLTLGLVYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9653..10001
location: region:9653-10001:1
so has part: feature:9653-10001:1:exon

YP_008593763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9653-10001:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Arg
so part of: sequence
location: 10002..10070
location: region:10002-10070:1
so has part: feature:10002-10070:1:region

position:10002:1
position: 10002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10070:1
position: 10070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10002-10070:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND4L
so part of: sequence
location: 10071..10367
location: region:10071-10367:1
so has part: feature:10071-10367:1:exon
subclass of: SO_0000010

17099357
type: Gene
SIO_000068: ncbigene

position:10071:1
position: 10071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10367:1
position: 10367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10071-10367:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFAFSSAFMLGLMGLAFHRQHLLSALLCLEGMMLSLFIALSLWTLQLDSTSFSASPMLLLAFSACEASAGLALLVATTRTHGSDQLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10071..10367
location: region:10071-10367:1
so has part: feature:10071-10367:1:exon

YP_008593764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10071-10367:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND4
so part of: sequence
location: 10361..11741
location: region:10361-11741:1
so has part: feature:10361-11741:1:exon
subclass of: SO_0000010

17099359
type: Gene
SIO_000068: ncbigene

position:10361:1
position: 10361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11741:1
position: 11741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10361-11741:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11741,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPTLMLVPTIWVTPAKWLWPTTLAHSFLIALTSFSWLKNFSETGWMSLNKYMATDALSTPLLVLTCWLLPLMILASQNHTSAEPINRQRMYITLLTSLQFFLILAFSATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTLSLLTIQFSDPILLSTYADKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMLRMMTVLEPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQMVLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGTGTLITAGYSLYMFLMTQRGPIPLHITAIEPSHSREHLLIFLHLLPLLLLILKPELIWGWTF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10361..11741
location: region:10361-11741:1
so has part: feature:10361-11741:1:exon

YP_008593765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10361-11741:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-His
so part of: sequence
location: 11742..11810
location: region:11742-11810:1
so has part: feature:11742-11810:1:region

position:11742:1
position: 11742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11810:1
position: 11810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11742-11810:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Ser
so part of: sequence
location: 11811..11877
location: region:11811-11877:1
so has part: feature:11811-11877:1:region

position:11811:1
position: 11811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11877:1
position: 11877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11811-11877:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Leu
so part of: sequence
location: 11883..11955
location: region:11883-11955:1
so has part: feature:11883-11955:1:region

position:11883:1
position: 11883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11955:1
position: 11955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11883-11955:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND5
so part of: sequence
location: 11956..13794
location: region:11956-13794:1
so has part: feature:11956-13794:1:exon
subclass of: SO_0000010

17099358
type: Gene
SIO_000068: ncbigene

position:11956:1
position: 11956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13794:1
position: 13794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11956-13794:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTSLMMTSSLIIIFFILAYPILTTLNPNEQHPQWALSHVKSAVKTAFIVSLLPLCLYLTQGTETIITTWNWMNTQSFDVNISLNFDCYSIIFTPIALYVTWSILEFASWYMHADPYMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVLYNRVGDIGLIFTMAWMATNLNSWELQQVFISAKSFDLTYPLIGLIIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRTSPLMQNNQLALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLGQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALILTLLATSFTAIYSLRVIFFVSMGTPRFNSLSPINENNPTVINPIKRLAWGSIIAGLLITSNFIPTKTPIMSMPPLLKLAALLVTIIGLLTALELASLTNKQFKPLPHLSAHHFSNMLGFFPTIIHRLPPKMNLTLGQMIASQMVDQTWLEKTGPKAITSLNLPLISTASNIQRGMVKTYLSLFLLTLLLIIPIISF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11956..13794
location: region:11956-13794:1
so has part: feature:11956-13794:1:exon

YP_008593766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11956-13794:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: ND6
so part of: sequence
location: complement(13791..14312)
location: region:13791-14312:-1
so has part: feature:13791-14312:-1:exon
subclass of: SO_0000010

17099360
type: Gene
SIO_000068: ncbigene

position:13791:-1
position: 13791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14312:-1
position: 14312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13791-14312:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTFIMYLLLFLLILGLVAVASNPSPYFAALGLVLVAGMGCGVLVSHGGPFLSLILFLIYLGGMLVVFAYSAALAAEPYPETWGSRPVIMSVMIYVLGVLLVGGIFWGGWYESSWMSVDELMEFSILRGDMAGVAMMYSSGGLMLIISAWVLLLTLFVVLELTRGLNRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13791..14312)
location: region:13791-14312:-1
so has part: feature:13791-14312:-1:exon

YP_008593767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13791-14312:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Glu
so part of: sequence
location: complement(14313..14381)
location: region:14313-14381:-1
so has part: feature:14313-14381:-1:region

position:14313:-1
position: 14313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14381:-1
position: 14381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14313-14381:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 173247
gene: CYTB
so part of: sequence
location: 14387..15527
location: region:14387-15527:1
so has part: feature:14387-15527:1:exon
subclass of: SO_0000010

17099361
type: Gene
SIO_000068: ncbigene

position:14387:1
position: 14387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15527:1
position: 15527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14387-15527:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 173247
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15527,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTSLRKTHPALKIVNDMVIDLPTPSNISAWWNFGSLLGLCLIVQIVTGLFLAMHYTADISAAFSSVAHICRDVNYGWLIRNMHANGASMFFVCIYMHIGRGLYYGSYLNKETWNTGVVLLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNATLSRFFAFHFILPFIIAAVAVIHLIFLHETGSNNPMGLSSNVDKISFHPYFSYKDLLGFAALILLLTTLSLFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLLLVPILHPSKHRSLTFRPLSQVCFWTLIANVLILTWIGGMPVEHPYIIVGQIASVLYFSIFLIFFPLAGWLENKFLGLN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14387..15527
location: region:14387-15527:1
so has part: feature:14387-15527:1:exon

YP_008593768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14387-15527:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Thr
so part of: sequence
location: 15528..15600
location: region:15528-15600:1
so has part: feature:15528-15600:1:region

position:15528:1
position: 15528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15600:1
position: 15600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15528-15600:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 173247
product: tRNA-Pro
so part of: sequence
location: complement(15601..15671)
location: region:15601-15671:-1
so has part: feature:15601-15671:-1:region

position:15601:-1
position: 15601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15671:-1
position: 15671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15601-15671:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 173247
note: control region
so part of: sequence
location: 15672..16612
location: region:15672-16612:1
so has part: feature:15672-16612:1:region

position:15672:1
position: 15672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15672-16612:1:region