Mycoplasmopsis columboralis strain NCTC10179 plasmid 2.
type: Entry
definition: Mycoplasmopsis columboralis strain NCTC10179 plasmid 2.
sequence version: NZ_LR215040.1
sequence date: 2022-12-16
sequence: sequence
division: CON
label: NZ_LR215040.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA104167209
keyword: RefSeq
source: Mycoplasmopsis columboralis (Mycoplasma columborale)
organism: Mycoplasmopsis columboralis
taxonomy: Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasmopsis.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR215040.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 16:23:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 799\nCDSs (total) :: 759\nGenes (coding) :: 749\nCDSs (with protein) :: 749\nGenes (RNA) :: 40\nrRNAs :: 2, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 3 (5S, 16S, 23S)\ntRNAs :: 29\nncRNAs :: 3\nPseudo Genes (total) :: 10\nCDSs (without protein) :: 10\nPseudo Genes (ambiguous residues) :: 0 of 10\nPseudo Genes (frameshifted) :: 5 of 10\nPseudo Genes (incomplete) :: 5 of 10\nPseudo Genes (internal stop) :: 3 of 10\nPseudo Genes (multiple problems) :: 3 of 10\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 17127
topology: linear
so has quality: SO_0000987
location: 1..17127
location: region:1-17127:1
RO_0002162: 171282

NZ_LR215040
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA104167209
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17127:1
position: 17127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17127:1:source
so part of: sequence
organism: Mycoplasmopsis columboralis
mol type: genomic DNA
strain: NCTC10179
serovar: not available: to be reported later
isolation source: Oropharynx
host: Bird (Pigeon)
culture collection: NCTC:10179
plasmid: 2
collection date: 1973

171282
type: Taxonomy
SIO_000068: taxonomy

EXC45_RS04075
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS04075
pseudo: true
so part of: sequence
location: 6..>1038
location: region:6-1038:1
so has part: feature:6-1038:1:exon
subclass of: SO_0000010

position:6:1
position: 6
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1038:1
position: 1038
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6-1038:1:exon

EXC45_RS04075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS04075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002564041.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: MupG family TIM beta-alpha barrel fold protein
SIO_010081: EXC45_RS04075
subclass of: SO_0000673
so part of: EXC45_RS04075
location: 6..>1038
location: region:6-1038:1
so has part: feature:6-1038:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6-1038:1:exon

EXC45_RS04080
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS04080
old locus tag: NCTC10179_00787
so part of: sequence
location: 1042..2202
location: region:1042-2202:1
so has part: feature:1042-2202:1:exon
subclass of: SO_0000010

position:1042:1
position: 1042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2202:1
position: 2202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042-2202:1:exon

EXC45_RS04080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS04080
old locus tag: NCTC10179_00787
EC number: 2.7.1.170
inference: COORDINATES: protein motif:HMM:NF015647.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: anhydro-N-acetylmuramic acid kinase
translation: MKNNYYAIGLMSGTSLDGLDIAYVNIKQNSSDPQDISVQLINFDIVEYPQTLKAKILKSFKEEFDSRFMCSLNFEIAHFYAQSVNDFIAKYNLDKAKVDFVATHGQTIYHLIDPSENEVKSTLQLGDISVLAQQVGITTIGDFRPADMANGGQGAPLVPMPDWLLLKKPNTIRLLQNIGGMGNVTVVKEDINEIFAFDTGPGNILIDLAMQKFYNQGYDKDAKVALSGQVNKALLEKLIQKDTDYLNIKPPKSTGRERYSIEYLNDVLVGFENIPHQDVVSTLTQYTAYSIYHAYTNYVLTNDTKAEIYVSGGGANNIYLMNALKEYFKPLDIPVNQSNVLNINIDAKEAIAFAVLGYLTLQKLPGNVPNATGAKKFSILGKIALV
SIO_010081: EXC45_RS04080
subclass of: SO_0000673
so part of: EXC45_RS04080
location: 1042..2202
location: region:1042-2202:1
so has part: feature:1042-2202:1:exon

WP_129693740.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1042-2202:1:exon

EXC45_RS03865
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03865
old locus tag: NCTC10179_00789
so part of: sequence
location: 3226..3489
location: region:3226-3489:1
so has part: feature:3226-3489:1:exon
subclass of: SO_0000010

position:3226:1
position: 3226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3489:1
position: 3489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3226-3489:1:exon

EXC45_RS03865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03865
old locus tag: NCTC10179_00789
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFNIDTILYKSENFEYVLKKYFELTNMTVYEKTVKKSSLLFKNKKDLEVVISEFNRQIETKSNQNPNATYIGIIKDYFEVNLNDDSQ
SIO_010081: EXC45_RS03865
subclass of: SO_0000673
so part of: EXC45_RS03865
location: 3226..3489
location: region:3226-3489:1
so has part: feature:3226-3489:1:exon

WP_129693811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3226-3489:1:exon

EXC45_RS03870
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03870
old locus tag: NCTC10179_00790
so part of: sequence
location: complement(4605..5651)
location: region:4605-5651:-1
so has part: feature:4605-5651:-1:exon
subclass of: SO_0000010

position:4605:-1
position: 4605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5651:-1
position: 5651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4605-5651:-1:exon

EXC45_RS03870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03870
old locus tag: NCTC10179_00790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015287292.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS30 family transposase
translation: MLKNNEYSFNEIADKLKIHRISLYHEIKKNSDLYGYIACSAQNKHDIRRQWSEQIKLRNTFEKYLEFSKLFLSKFDKKTWGVEVTYLVITNNYPEVNHPSLRTVFNWINSGIWVITRDDRLRKIYKKGRKRYISAVERLVGKRWVVPYWARPSKIDDRTDFGHWELDLIVGKTGLKQNHLLTFVERKSRFGLIKKVYSKDPWKILITLWDLIKEYRLNVKSITTDNGFEFNKLFYLGYRLKIKIYLTDPYASFEKGTIEHYNGIVRRFFKKRTNFNNVSDEKIKEIQDKINQMPRKIHGYLSADEIFFDLNYYKEKWNPIPMEEKLFTKIQRRRPSNTSRNKFFKNKY
SIO_010081: EXC45_RS03870
subclass of: SO_0000673
so part of: EXC45_RS03870
location: complement(4605..5651)
location: region:4605-5651:-1
so has part: feature:4605-5651:-1:exon

WP_223213876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4605-5651:-1:exon

EXC45_RS03875
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03875
old locus tag: NCTC10179_00791
so part of: sequence
location: complement(5881..6348)
location: region:5881-6348:-1
so has part: feature:5881-6348:-1:exon
subclass of: SO_0000010

position:5881:-1
position: 5881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6348:-1
position: 6348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5881-6348:-1:exon

EXC45_RS03875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03875
old locus tag: NCTC10179_00791
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVRDIVPTIASRKWDFDMQVKALTKYLVVKNFYHTGQKMINKVYLTLKNEESIFNCQAYSEFMFLSLNALGHKNNIQFNGDYYFPNGKWLPHVNLNYDNNGKVYVIDATFADQFNTKNPTLSDYNKVNVDINKNILIPIEEYQARLNAVTEFLGY
SIO_010081: EXC45_RS03875
subclass of: SO_0000673
so part of: EXC45_RS03875
location: complement(5881..6348)
location: region:5881-6348:-1
so has part: feature:5881-6348:-1:exon

WP_129693812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5881-6348:-1:exon

EXC45_RS03880
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03880
so part of: sequence
location: complement(6441..6644)
location: region:6441-6644:-1
so has part: feature:6441-6644:-1:exon
subclass of: SO_0000010

position:6441:-1
position: 6441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6644:-1
position: 6644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6441-6644:-1:exon

EXC45_RS03880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKLKDLFSLDKLNDLFVSFKEDAWMIFDVKDKVDLDFLNSKWDFRQNYKTEEQKIKQNQNETLFYLN
SIO_010081: EXC45_RS03880
subclass of: SO_0000673
so part of: EXC45_RS03880
location: complement(6441..6644)
location: region:6441-6644:-1
so has part: feature:6441-6644:-1:exon

WP_129693813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6441-6644:-1:exon

EXC45_RS03885
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03885
old locus tag: NCTC10179_00792
so part of: sequence
location: complement(7287..7502)
location: region:7287-7502:-1
so has part: feature:7287-7502:-1:exon
subclass of: SO_0000010

position:7287:-1
position: 7287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7502:-1
position: 7502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7287-7502:-1:exon

EXC45_RS03885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03885
old locus tag: NCTC10179_00792
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKRKQITETKNYDGYAKEDLNVSLKNKLIVKRNGNSLSIDIKVISEITKPYSLSDTTEILVANPEENQTYF
SIO_010081: EXC45_RS03885
subclass of: SO_0000673
so part of: EXC45_RS03885
location: complement(7287..7502)
location: region:7287-7502:-1
so has part: feature:7287-7502:-1:exon

WP_129693814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7287-7502:-1:exon

EXC45_RS03980
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03980
so part of: sequence
location: 7583..7741
location: region:7583-7741:1
so has part: feature:7583-7741:1:exon
subclass of: SO_0000010

position:7583:1
position: 7583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7741:1
position: 7741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7583-7741:1:exon

EXC45_RS03980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MYLYFLNNCISGKTSELAELKEYVLKSISFEGSVESELIGIIQVSLQHNYHQ
SIO_010081: EXC45_RS03980
subclass of: SO_0000673
so part of: EXC45_RS03980
location: 7583..7741
location: region:7583-7741:1
so has part: feature:7583-7741:1:exon

WP_165163221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7583-7741:1:exon

EXC45_RS03985
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03985
so part of: sequence
location: complement(8178..8318)
location: region:8178-8318:-1
so has part: feature:8178-8318:-1:exon
subclass of: SO_0000010

position:8178:-1
position: 8178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8318:-1
position: 8318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8178-8318:-1:exon

EXC45_RS03985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQEQVSNLQEQLRNKETQIKIFQINFKQNKINFKFFKEKRAIAKST
SIO_010081: EXC45_RS03985
subclass of: SO_0000673
so part of: EXC45_RS03985
location: complement(8178..8318)
location: region:8178-8318:-1
so has part: feature:8178-8318:-1:exon

WP_165163223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8178-8318:-1:exon

EXC45_RS03890
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03890
old locus tag: NCTC10179_00793
so part of: sequence
location: complement(9215..9715)
location: region:9215-9715:-1
so has part: feature:9215-9715:-1:exon
subclass of: SO_0000010

position:9215:-1
position: 9215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9715:-1
position: 9715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9215-9715:-1:exon

EXC45_RS03890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03890
old locus tag: NCTC10179_00793
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLDGVYAKNQSDYSRFNFNWRFAKWYERCVMMQDSKWNIELFKRTNRSKEQALLKLVGSKITTPKIKYSNTSELGKLKSELQSLQIEFEKVSLQRDNLLKDKASLEEQLNQLKTERDNLKVQLQLTIEQNNEEIARLNTIIAMLENDKEDLQNQNNSYKNNFKVLK
SIO_010081: EXC45_RS03890
subclass of: SO_0000673
so part of: EXC45_RS03890
location: complement(9215..9715)
location: region:9215-9715:-1
so has part: feature:9215-9715:-1:exon

WP_129693815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9215-9715:-1:exon

EXC45_RS03990
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03990
old locus tag: NCTC10179_00794
so part of: sequence
location: complement(9693..9860)
location: region:9693-9860:-1
so has part: feature:9693-9860:-1:exon
subclass of: SO_0000010

position:9693:-1
position: 9693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9860:-1
position: 9860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9693-9860:-1:exon

EXC45_RS03990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03990
old locus tag: NCTC10179_00794
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQAVKTEKNKNKKWWFIGATAAGIVAGASLILWGCGQAQNKKEMKNISNAWWSIC
SIO_010081: EXC45_RS03990
subclass of: SO_0000673
so part of: EXC45_RS03990
location: complement(9693..9860)
location: region:9693-9860:-1
so has part: feature:9693-9860:-1:exon

WP_165163226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9693-9860:-1:exon

EXC45_RS03895
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03895
old locus tag: NCTC10179_00795
so part of: sequence
location: 11200..11385
location: region:11200-11385:1
so has part: feature:11200-11385:1:exon
subclass of: SO_0000010

position:11200:1
position: 11200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11385:1
position: 11385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11200-11385:1:exon

EXC45_RS03895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03895
old locus tag: NCTC10179_00795
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSTLKFEAYKMLDYMDAFSYNESLWYIFEDLQDIDDQQLLKYIQTNKNEWEAIKRKYKLEL
SIO_010081: EXC45_RS03895
subclass of: SO_0000673
so part of: EXC45_RS03895
location: 11200..11385
location: region:11200-11385:1
so has part: feature:11200-11385:1:exon

WP_129693816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11200-11385:1:exon

EXC45_RS03900
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03900
so part of: sequence
location: 11897..12217
location: region:11897-12217:1
so has part: feature:11897-12217:1:exon
subclass of: SO_0000010

position:11897:1
position: 11897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12217:1
position: 12217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11897-12217:1:exon

EXC45_RS03900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNKYVDTTNILVMDTEEFSLLYKSKEFEEISNLNFEDAKNIVNLLIHNFSENKFNYDITFQRVEINKDTMCPESKIIFLHWSLKKINNVRYRYWSFSRSLRFYLKI
SIO_010081: EXC45_RS03900
subclass of: SO_0000673
so part of: EXC45_RS03900
location: 11897..12217
location: region:11897-12217:1
so has part: feature:11897-12217:1:exon

WP_129693817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11897-12217:1:exon

EXC45_RS03905
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03905
pseudo: true
so part of: sequence
location: 12401..13578
location: region:12401-13578:1
so has part: feature:12401-13578:1:exon
subclass of: SO_0000010

position:12401:1
position: 12401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13578:1
position: 13578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12401-13578:1:exon

EXC45_RS03905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_041363864.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: IS3 family transposase
SIO_010081: EXC45_RS03905
subclass of: SO_0000673
so part of: EXC45_RS03905
location: 12401..13578
location: region:12401-13578:1
so has part: feature:12401-13578:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12401-13578:1:exon

EXC45_RS03910
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03910
old locus tag: NCTC10179_00798
so part of: sequence
location: complement(13645..13950)
location: region:13645-13950:-1
so has part: feature:13645-13950:-1:exon
subclass of: SO_0000010

position:13645:-1
position: 13645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13950:-1
position: 13950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13645-13950:-1:exon

EXC45_RS03910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03910
old locus tag: NCTC10179_00798
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHTFKEFGTLFALCGSVALFGQLLFANNFTLFFVNAFLNGFITGVLLFVTRNHGYFTSSLNVLLGVNFIYLINKQKTWKSALALLISTVSTIVFSIFEHWF
SIO_010081: EXC45_RS03910
subclass of: SO_0000673
so part of: EXC45_RS03910
location: complement(13645..13950)
location: region:13645-13950:-1
so has part: feature:13645-13950:-1:exon

WP_129693818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13645-13950:-1:exon

EXC45_RS03915
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03915
so part of: sequence
location: complement(13967..14353)
location: region:13967-14353:-1
so has part: feature:13967-14353:-1:exon
subclass of: SO_0000010

position:13967:-1
position: 13967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14353:-1
position: 14353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13967-14353:-1:exon

EXC45_RS03915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03915
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIRKIISEFVGSFFITFGACLCMFVALKSSKKYLKYHFTYPWATALTPIVIFITGLLVSLNVSDTVVIGNPINLFIIFCKLIITNHNGAYFKGFCSIIIMQLLGIILAVILYRALFKRIAPQNYLKKL
SIO_010081: EXC45_RS03915
subclass of: SO_0000673
so part of: EXC45_RS03915
location: complement(13967..14353)
location: region:13967-14353:-1
so has part: feature:13967-14353:-1:exon

WP_129693819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13967-14353:-1:exon

EXC45_RS03920
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03920
old locus tag: NCTC10179_00800
so part of: sequence
location: complement(14619..15221)
location: region:14619-15221:-1
so has part: feature:14619-15221:-1:exon
subclass of: SO_0000010

position:14619:-1
position: 14619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15221:-1
position: 15221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14619-15221:-1:exon

EXC45_RS03920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03920
old locus tag: NCTC10179_00800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQIVFLSWFHKSIIASEFVGAFFITFAACVSMFIALRSNKFVFSYHFTHPWAILIAPILIYLIALFFASKGDLVVIIGNPINLFINFFKLLFNNFDLNYFKGFFSICVIQFNAMLFAVILYKAIFKKIAPQNYVRKINNNPDFTMHTFKEFATLFILCASVAVFGNWLLTNNLSLFFLNSAINALITGLMLFFTKKRIFH
SIO_010081: EXC45_RS03920
subclass of: SO_0000673
so part of: EXC45_RS03920
location: complement(14619..15221)
location: region:14619-15221:-1
so has part: feature:14619-15221:-1:exon

WP_129693820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14619-15221:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 171282
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00168
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: lysine
so part of: sequence
location: 15336..15499
location: region:15336-15499:1
so has part: feature:15336-15499:1:region

position:15336:1
position: 15336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15499:1
position: 15499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15336-15499:1:region

EXC45_RS03930
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03930
old locus tag: NCTC10179_00802
so part of: sequence
location: 15586..15840
location: region:15586-15840:1
so has part: feature:15586-15840:1:exon
subclass of: SO_0000010

position:15586:1
position: 15586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15840:1
position: 15840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15586-15840:1:exon

EXC45_RS03930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03930
old locus tag: NCTC10179_00802
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKVKQYSKYEDVPKQYRFDLEDILQGQTIETLIEQYQNLFEQRITIKDSKYNSLKEYLVDVKLSEEQTALSYRIENYVSNNLFY
SIO_010081: EXC45_RS03930
subclass of: SO_0000673
so part of: EXC45_RS03930
location: 15586..15840
location: region:15586-15840:1
so has part: feature:15586-15840:1:exon

WP_129693821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15586-15840:1:exon

EXC45_RS03935
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03935
so part of: sequence
location: 15806..16159
location: region:15806-16159:1
so has part: feature:15806-16159:1:exon
subclass of: SO_0000010

position:15806:1
position: 15806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16159:1
position: 16159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15806-16159:1:exon

EXC45_RS03935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKITFQIIFSTNVVNPQFKQLSEKFDFLNEQLLAKFGSESNRFYQNLDKLKVWKDTPELKEYKHSIENAILDFKTQTFWWSWRIRSKTIIWKSFIKSSLFNFNQQRIRLWFHHRFKR
SIO_010081: EXC45_RS03935
subclass of: SO_0000673
so part of: EXC45_RS03935
location: 15806..16159
location: region:15806-16159:1
so has part: feature:15806-16159:1:exon

WP_129693822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15806-16159:1:exon

EXC45_RS03940
type: Gene
subclass of: SO_0000704
RO_0002162: 171282
locus tag: EXC45_RS03940
old locus tag: NCTC10179_00803
so part of: sequence
location: 16472..17053
location: region:16472-17053:1
so has part: feature:16472-17053:1:exon
subclass of: SO_0000010

position:16472:1
position: 16472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17053:1
position: 17053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16472-17053:1:exon

EXC45_RS03940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 171282
locus tag: EXC45_RS03940
old locus tag: NCTC10179_00803
inference: COORDINATES: protein motif:HMM:NF013591.2
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: M3 family metallopeptidase
translation: MKFNEKFNPWDNKRLLVNVKASYSVEEAKELVRESFKPFGNEYMSQINKALDENWVDFMPVNSKRGGAYSIGSSYGLNKKYILMNFKGDLDSVETLAHELGHSMHSYFSDTRQTIANSEYPIFLAEIASIYNELMLFDYLLKHSNDKKLKFQILENMIVGFIGTVMRQVEWSNYEYNLYKAIEEGKAFQASNL
SIO_010081: EXC45_RS03940
subclass of: SO_0000673
so part of: EXC45_RS03940
location: 16472..17053
location: region:16472-17053:1
so has part: feature:16472-17053:1:exon

WP_165163228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16472-17053:1:exon