Natrinema zhouii strain YPL30 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Natrinema sp. nov., isolated from salt mine at Yunnan province(Cui,H.-L.)
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084885.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.3.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 219.0x\nSequencing Technology :: Illumina HiSeq; PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 14:49:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,348\nCDSs (total) :: 5,285\nGenes (coding) :: 5,018\nCDSs (with protein) :: 5,018\nGenes (RNA) :: 63\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 267\nCDSs (without protein) :: 267\nPseudo Genes (ambiguous residues) :: 0 of 267\nPseudo Genes (frameshifted) :: 137 of 267\nPseudo Genes (incomplete) :: 172 of 267\nPseudo Genes (internal stop) :: 107 of 267\nPseudo Genes (multiple problems) :: 120 of 267\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006111195.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006825898.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111198.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825900.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013964.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945662.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035722.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014556346.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004216228.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006054798.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005556156.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408669.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_049912812.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007259325.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259067.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261178.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008160192.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_006884601.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378270.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378268.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006823936.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013875761.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944100.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977256.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881843.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024864.2
COORDINATES: similar to AA sequence:RefSeq:WP_013879091.1
COORDINATES: protein motif:HMM:NF016056.2
DCC1-like thiol-disulfide oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004055478.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007275533.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691183.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556540.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006088033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048641.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432936.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183507.1
COORDINATES: protein motif:HMM:NF015720.2
COORDINATES: similar to AA sequence:RefSeq:WP_013879090.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012943190.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432891.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004052561.1
COORDINATES: similar to AA sequence:RefSeq:WP_009366217.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006672192.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013880004.1
DDE-type integrase/transposase/recombinase
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006667296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881695.1
COORDINATES: protein motif:HMM:NF024235.2
COORDINATES: similar to AA sequence:RefSeq:WP_015298782.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736853.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007694787.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007188045.1
COORDINATES: protein motif:HMM:NF001923.0
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008423591.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611141.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009378106.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660040.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289556.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015321214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825220.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
DNA polymerase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008313895.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992454.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557951.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050605.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048572.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008425301.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182355.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006885535.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014050600.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594487.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289565.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667171.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183441.1
COORDINATES: protein motif:HMM:NF025683.2
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006824265.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053538.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004965623.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053540.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298774.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010901956.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257371.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
COORDINATES: protein motif:HMM:NF019352.2
COORDINATES: similar to AA sequence:RefSeq:WP_008387947.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890432.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611210.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881869.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012612.2
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611238.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060460.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015346.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005533904.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006883548.1
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: similar to AA sequence:RefSeq:WP_008015343.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012945783.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667377.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165012.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015142.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185501.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111141.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611425.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660025.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182386.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666989.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825912.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825913.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825914.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825916.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825917.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267580.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006825923.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667057.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421987.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111165.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667050.1
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053169.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580408.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580409.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580410.1
DNA double-strand break repair nuclease NurA
COORDINATES: similar to AA sequence:RefSeq:WP_015233662.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580412.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222280.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945601.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421961.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651303.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006651304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180705.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605512.1
COORDINATES: similar to AA sequence:RefSeq:WP_014040852.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667023.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945960.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945964.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945967.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111192.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667002.1