Natrinema zhouii strain YPL30 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Natrinema sp. nov., isolated from salt mine at Yunnan province(Cui,H.-L.)
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084882.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.3.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 219.0x\nSequencing Technology :: Illumina HiSeq; PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 14:49:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,348\nCDSs (total) :: 5,285\nGenes (coding) :: 5,018\nCDSs (with protein) :: 5,018\nGenes (RNA) :: 63\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 267\nCDSs (without protein) :: 267\nPseudo Genes (ambiguous residues) :: 0 of 267\nPseudo Genes (frameshifted) :: 137 of 267\nPseudo Genes (incomplete) :: 172 of 267\nPseudo Genes (internal stop) :: 107 of 267\nPseudo Genes (multiple problems) :: 120 of 267\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004214234.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015321086.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015788832.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053352.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008524569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039908.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006091195.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996418.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_005040673.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065499.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865572.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015343.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012660100.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660077.1
COORDINATES: similar to AA sequence:RefSeq:WP_013466475.1
NFYB/HAP3 family transcription factor subunit
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: similar to AA sequence:RefSeq:WP_015322277.1
COORDINATES: protein motif:HMM:NF014080.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012659250.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051009.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667310.1
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: similar to AA sequence:RefSeq:WP_008413666.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667308.1
COORDINATES: similar to AA sequence:RefSeq:WP_006601062.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667305.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182264.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055974.1
GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006667301.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0048034 - heme O biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006653471.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667299.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043700.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015764189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518753.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996630.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179918.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827598.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007694133.1
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
1,4-dihydroxy-2-naphthoate polyprenyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010903955.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864302.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094373.1
COORDINATES: protein motif:HMM:NF012955.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008007517.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:TIGR02122.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433213.1
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006433212.1
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005042358.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042357.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004978199.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433208.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433207.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009376867.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579629.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013876057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430279.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876038.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431716.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431715.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649664.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092047.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343654.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967263.1
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: similar to AA sequence:RefSeq:WP_015233383.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF012345.2
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008417073.1
GO:0050131 - N-methyl-L-amino-acid oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298669.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015298923.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409494.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298912.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015298873.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008896058.1
COORDINATES: similar to AA sequence:RefSeq:WP_008010783.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298633.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945849.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945898.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180944.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233176.1
COORDINATES: protein motif:HMM:TIGR02928.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006827380.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040804.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163527.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421929.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181051.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004041630.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041349.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523586.1
COORDINATES: protein motif:HMM:NF020897.2
COORDINATES: similar to AA sequence:RefSeq:WP_006111202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111199.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111198.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111195.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945969.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945967.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945966.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945964.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945960.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667023.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035025.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233907.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: similar to AA sequence:RefSeq:WP_012944164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667314.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008421961.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945842.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043159.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945582.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666459.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092480.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067200.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432358.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648118.1
COORDINATES: similar to AA sequence:RefSeq:WP_009365822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945667.1
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015408669.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419438.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183540.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182069.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039162.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043051.1
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015322476.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088017.1
COORDINATES: similar to AA sequence:RefSeq:WP_004962176.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004058061.1
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: protein motif:HMM:NF013237.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007740866.1
tellurite resistance/C4-dicarboxylate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004052229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008576394.1
PLP-dependent aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008424328.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188884.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182071.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054891.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_004052561.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826424.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110124.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667050.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945927.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111162.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667058.1
COORDINATES: similar to AA sequence:RefSeq:WP_015321179.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006088341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111153.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651702.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111143.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111141.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945579.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881876.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111137.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945285.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863928.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667182.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_006111132.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008419546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431733.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667178.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179426.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187338.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111127.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006179420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008012537.1
COORDINATES: similar to AA sequence:RefSeq:WP_006087850.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431742.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892516.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143721.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111121.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431744.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111119.1
COORDINATES: similar to AA sequence:RefSeq:WP_008583511.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006111116.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_008422803.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945351.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945352.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004266936.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111112.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945356.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431755.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650528.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892502.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111107.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107417.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111103.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881973.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111101.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576223.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261644.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667141.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187446.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825912.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612342.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF009945.0
COORDINATES: similar to AA sequence:RefSeq:WP_006433044.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054537.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894144.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895873.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006180678.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004214367.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041453.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885929.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885927.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885926.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885925.1
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885922.1
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013088.2
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004595820.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006179599.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_006179600.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595762.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183382.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308665.1
GO:0070069 - cytochrome complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890413.1
GO:0070069 - cytochrome complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0006119 - oxidative phosphorylation [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_006108107.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875741.1
COORDINATES: similar to AA sequence:RefSeq:WP_004055018.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF019159.2
MBL fold metallo-hydrolase RNA specificity domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216744.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004041011.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943566.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018256465.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012943568.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008894691.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313798.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538722.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_015319631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941687.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825289.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825290.1
b(o/a)3-type cytochrome-c oxidase subunit 1
COORDINATES: similar to AA sequence:RefSeq:WP_006825291.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825292.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881968.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881969.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006650532.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598191.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088211.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600796.1
GO:0035550 - urease complex [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007188456.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572905.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515860.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013899.2
COORDINATES: similar to AA sequence:RefSeq:WP_004965708.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008008782.1
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006181027.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516850.1
COORDINATES: similar to AA sequence:RefSeq:WP_005556849.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980461.1
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006825304.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576479.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385331.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013879592.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298902.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666005.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667205.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321909.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611935.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825315.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182252.1
COORDINATES: similar to AA sequence:RefSeq:WP_004266979.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006078555.1
TrkA C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007274024.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895812.1
COORDINATES: protein motif:HMM:NF014027.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159316.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667323.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298782.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298904.1
COORDINATES: similar to AA sequence:RefSeq:WP_006064369.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186391.1
membrane bound Lon protease from Thermococcus kodakarensis shows ATP-dependent protease activity towards folded polypeptides; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006667315.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824265.1
COORDINATES: similar to AA sequence:RefSeq:WP_008456107.1
COORDINATES: similar to AA sequence:RefSeq:WP_008366810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004961502.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
GO:0006801 - superoxide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183467.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183389.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571298.1
COORDINATES: protein motif:HMM:NF015409.2
COORDINATES: similar to AA sequence:RefSeq:WP_008164093.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572751.1
COORDINATES: similar to AA sequence:RefSeq:WP_008440400.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_015761953.1
catalyzes the interconversion of alanine and pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015320494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911296.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013875718.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010612640.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997362.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182210.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182254.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013881093.1
DNA starvation/stationary phase protection protein DpsA
COORDINATES: similar to AA sequence:RefSeq:WP_005536166.1
pyruvoyl-dependent arginine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_013879459.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009207085.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267289.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824023.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611400.1
COORDINATES: protein motif:HMM:NF024811.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012945838.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825930.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006111165.1
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: similar to AA sequence:RefSeq:WP_008527063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422996.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825922.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
COORDINATES: similar to AA sequence:RefSeq:WP_015909759.1
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261137.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650787.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182396.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222179.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005038815.1
COORDINATES: similar to AA sequence:RefSeq:WP_005045835.1
COORDINATES: similar to AA sequence:RefSeq:WP_008005776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110492.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863192.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008421841.1
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: similar to AA sequence:RefSeq:WP_006825916.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030670.1
COORDINATES: similar to AA sequence:RefSeq:WP_015790561.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006666987.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180407.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_008013981.1
COORDINATES: similar to AA sequence:RefSeq:WP_006429838.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979022.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667111.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824121.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414135.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006666794.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007983209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945141.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004214492.1