Cellulosimicrobium cellulans strain ORNL-0100 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.
Submitted (21-MAR-2021) Microbiology, The Forsyth Institute, 245 First Street, Cambridge, MA 02142, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072388.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 22-DEC-2020\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 107x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:39:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,021\nCDSs (total) :: 3,955\nGenes (coding) :: 3,931\nCDSs (with protein) :: 3,931\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 9 of 24\nPseudo Genes (incomplete) :: 19 of 24\nPseudo Genes (internal stop) :: 2 of 24\nPseudo Genes (multiple problems) :: 5 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Mircea Podar, Oak Ridge National Laboratory
COORDINATES: similar to AA sequence:RefSeq:WP_017834495.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003859107.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882303.1
COORDINATES: similar to AA sequence:RefSeq:WP_013161950.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_019157855.1
COORDINATES: similar to AA sequence:RefSeq:WP_019160231.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896436.1
COORDINATES: similar to AA sequence:RefSeq:WP_010534187.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017197953.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006246582.1
GO:0018942 - organometal metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014805449.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885069.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012946898.1
COORDINATES: similar to AA sequence:RefSeq:WP_018223867.1
COORDINATES: similar to AA sequence:RefSeq:WP_003975554.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012803697.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013115610.1
COORDINATES: protein motif:HMM:NF040012.1
COORDINATES: similar to AA sequence:RefSeq:WP_017680803.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012879600.1
COORDINATES: similar to AA sequence:RefSeq:WP_017884928.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013772816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006591076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012039643.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013016505.1
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_017602395.1
COORDINATES: similar to AA sequence:RefSeq:WP_013675068.1
GO:0003924 - GTPase activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005260827.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012687294.1
COORDINATES: similar to AA sequence:RefSeq:WP_010144680.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805591.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012950686.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010307616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007078827.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012180687.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_007297992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018723784.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix family transcriptional regulator
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: similar to AA sequence:RefSeq:WP_018557310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012866470.1
COORDINATES: similar to AA sequence:RefSeq:WP_015883147.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013118851.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015772791.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013840078.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020114818.1
COORDINATES: similar to AA sequence:RefSeq:WP_020575157.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020385348.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805575.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011857308.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831555.1
COORDINATES: similar to AA sequence:RefSeq:WP_012866229.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350296.1
COORDINATES: similar to AA sequence:RefSeq:WP_017201940.1
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_013350309.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013350310.1
COORDINATES: similar to AA sequence:RefSeq:WP_019160196.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350314.1
COORDINATES: similar to AA sequence:RefSeq:WP_018568297.1
COORDINATES: similar to AA sequence:RefSeq:WP_005885621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350320.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_017680641.1
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_005965332.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599874.1
COORDINATES: similar to AA sequence:RefSeq:WP_019033867.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013839395.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019880.2
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_005053872.1
COORDINATES: similar to AA sequence:RefSeq:WP_005260840.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF021214.2
COORDINATES: similar to AA sequence:RefSeq:WP_017569422.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016664770.1
COORDINATES: similar to AA sequence:RefSeq:WP_010552432.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011689624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012877230.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_013678379.1
COORDINATES: similar to AA sequence:RefSeq:WP_012879724.1
COORDINATES: similar to AA sequence:RefSeq:WP_020017189.1
COORDINATES: similar to AA sequence:RefSeq:WP_019484276.1
COORDINATES: similar to AA sequence:RefSeq:WP_005092800.1
COORDINATES: similar to AA sequence:RefSeq:WP_012725583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012725582.1
COORDINATES: similar to AA sequence:RefSeq:WP_017975738.1
COORDINATES: similar to AA sequence:RefSeq:WP_008720461.1
COORDINATES: similar to AA sequence:RefSeq:WP_005054913.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013020585.1
COORDINATES: protein motif:HMM:TIGR01512.1
COORDINATES: similar to AA sequence:RefSeq:WP_018761659.1
COORDINATES: protein motif:HMM:NF014471.2
COORDINATES: similar to AA sequence:RefSeq:WP_014691255.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013115599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882286.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013115598.1
COORDINATES: similar to AA sequence:RefSeq:WP_017682309.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005264154.1
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_013115965.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017834496.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013882306.1