Hymenobacter monticola strain KACC 22596 plasmid unnamed5, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (28-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094539.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 182.6x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:30:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,170\nCDSs (total) :: 5,113\nGenes (coding) :: 5,079\nCDSs (with protein) :: 5,079\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 1 of 34\nPseudo Genes (incomplete) :: 26 of 34\nPseudo Genes (internal stop) :: 8 of 34\nPseudo Genes (multiple problems) :: 1 of 34\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: a pond on the Huanglong mountain, Sichuan
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014566.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_019991507.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020603867.1
COORDINATES: similar to AA sequence:RefSeq:WP_013407258.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991027.1
COORDINATES: protein motif:HMM:NF002805.0
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
sugar isomerase domain-containing protein
COORDINATES: protein motif:HMM:NF024969.2
COORDINATES: similar to AA sequence:RefSeq:WP_002987328.1
COORDINATES: similar to AA sequence:RefSeq:WP_012927796.1
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2