Hymenobacter monticola strain KACC 22596 plasmid unnamed3, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (28-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094537.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 182.6x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:30:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,170\nCDSs (total) :: 5,113\nGenes (coding) :: 5,079\nCDSs (with protein) :: 5,079\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 1 of 34\nPseudo Genes (incomplete) :: 26 of 34\nPseudo Genes (internal stop) :: 8 of 34\nPseudo Genes (multiple problems) :: 1 of 34\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: a pond on the Huanglong mountain, Sichuan
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010518912.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002993043.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694919.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949660.1
COORDINATES: similar to AA sequence:RefSeq:WP_015482077.1
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: similar to AA sequence:RefSeq:WP_015267003.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_002980936.1
COORDINATES: protein motif:HMM:NF024960.2
COORDINATES: similar to AA sequence:RefSeq:WP_007139564.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: protein motif:HMM:TIGR03781.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: protein motif:HMM:TIGR03780.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_015810626.1
COORDINATES: similar to AA sequence:RefSeq:WP_019943211.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015809152.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012927369.1
COORDINATES: protein motif:HMM:NF022838.2
COORDINATES: similar to AA sequence:RefSeq:WP_014679395.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010585551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015808357.1
COORDINATES: similar to AA sequence:RefSeq:WP_019948932.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019949107.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025341.2
COORDINATES: protein motif:HMM:NF019844.2
COORDINATES: similar to AA sequence:RefSeq:WP_019947653.1
This anti-anti-sigma factor, or anti-sigma factor antagonist, belongs to a family that includes characterized members SpoIIAA, RsbV, RsfA, and RsfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014325.2
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412216.1
COORDINATES: protein motif:HMM:NF026948.2
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_002679292.1
COORDINATES: similar to AA sequence:RefSeq:WP_004289453.1
COORDINATES: similar to AA sequence:RefSeq:WP_004720351.1
COORDINATES: similar to AA sequence:RefSeq:WP_015731191.1
COORDINATES: similar to AA sequence:RefSeq:WP_007850454.1
COORDINATES: protein motif:HMM:NF025053.2
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_015282470.1
lipopolysaccharide kinase InaA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012509390.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949765.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018480043.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF014250.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018621664.1
class I SAM-dependent DNA methyltransferase