Hymenobacter monticola strain KACC 22596 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (28-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094535.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 182.6x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:30:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,170\nCDSs (total) :: 5,113\nGenes (coding) :: 5,079\nCDSs (with protein) :: 5,079\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 1 of 34\nPseudo Genes (incomplete) :: 26 of 34\nPseudo Genes (internal stop) :: 8 of 34\nPseudo Genes (multiple problems) :: 1 of 34\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: a pond on the Huanglong mountain, Sichuan
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020212992.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020212993.1
COORDINATES: protein motif:HMM:NF026952.2
tellurite resistance TerB C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_020603696.1
COORDINATES: similar to AA sequence:RefSeq:WP_016240384.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020597342.1
COORDINATES: similar to AA sequence:RefSeq:WP_014796981.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF040155.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013634514.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007661019.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949041.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF038032.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019844.2
COORDINATES: similar to AA sequence:RefSeq:WP_002635942.1
COORDINATES: protein motif:HMM:NF016955.2
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013634510.1
Qat anti-phage system TatD family nuclease QatD
Qat anti-phage system QueC-like protein QatC
COORDINATES: similar to AA sequence:RefSeq:WP_013634513.1
COORDINATES: protein motif:HMM:NF022021.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949229.1
COORDINATES: similar to AA sequence:RefSeq:WP_015329222.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013568771.1
COORDINATES: similar to AA sequence:RefSeq:WP_015030000.1
COORDINATES: similar to AA sequence:RefSeq:WP_009125074.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_013926253.1
COORDINATES: similar to AA sequence:RefSeq:WP_015190920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015031142.1
COORDINATES: similar to AA sequence:RefSeq:WP_020606826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013082570.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014336543.1
COORDINATES: similar to AA sequence:RefSeq:WP_020606823.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013763178.1
COORDINATES: similar to AA sequence:RefSeq:WP_020606821.1
COORDINATES: similar to AA sequence:RefSeq:WP_020606820.1
COORDINATES: similar to AA sequence:RefSeq:WP_013767366.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018622503.1
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_005928896.1
GO:0047472 - 3-carboxy-cis,cis-muconate cycloisomerase activity [Evidence IEA]
3-carboxy-cis,cis-muconate cycloisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_017362028.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011912440.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020597749.1
COORDINATES: similar to AA sequence:RefSeq:WP_019986783.1
COORDINATES: similar to AA sequence:RefSeq:WP_020212771.1
COORDINATES: similar to AA sequence:RefSeq:WP_014202572.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000344297.1
NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012792020.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199745.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF037012.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533557.1
COORDINATES: protein motif:HMM:NF013117.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009185464.1
COORDINATES: similar to AA sequence:RefSeq:WP_020604403.1
COORDINATES: similar to AA sequence:RefSeq:WP_008240603.1
COORDINATES: similar to AA sequence:RefSeq:WP_019990125.1
COORDINATES: similar to AA sequence:RefSeq:WP_015808131.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007653909.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018897597.1
COORDINATES: similar to AA sequence:RefSeq:WP_009279837.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014850.2
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF014851.2
COORDINATES: similar to AA sequence:RefSeq:WP_004082753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007217098.1
COORDINATES: similar to AA sequence:RefSeq:WP_013071082.1
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019598350.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018472784.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: similar to AA sequence:RefSeq:WP_006335321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008583753.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019942898.1
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: similar to AA sequence:RefSeq:WP_020212574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014222279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012789729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013685516.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012024390.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012301.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF018305.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019946553.1
COORDINATES: similar to AA sequence:RefSeq:WP_019946552.1
COORDINATES: similar to AA sequence:RefSeq:WP_018476620.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019946548.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014200784.1
COORDINATES: similar to AA sequence:RefSeq:WP_005571067.1
COORDINATES: protein motif:HMM:NF019633.2
COORDINATES: similar to AA sequence:RefSeq:WP_019948511.1
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007735573.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
vitamin K epoxide reductase family protein
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_019990228.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019990229.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008581469.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: protein motif:HMM:NF021438.2
COORDINATES: protein motif:HMM:NF014466.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_017730293.1
COORDINATES: protein motif:HMM:NF039873.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF014510.2