Corynebacterium stationis strain 622=DSM 20302 plasmid pCstat1, al1l pseudoknot.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium stationis 622(T)(=DSM 20302(T)), isolated from seawater
Submitted (18-AUG-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP009252.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nCoverage :: 175.0x\nSequencing Technology :: Illumina\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:56:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,665\nCDSs (total) :: 2,597\nGenes (coding) :: 2,550\nCDSs (with protein) :: 2,550\nGenes (RNA) :: 68\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 18 of 47\nPseudo Genes (incomplete) :: 30 of 47\nPseudo Genes (internal stop) :: 8 of 47\nPseudo Genes (multiple problems) :: 7 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium stationis
COORDINATES: similar to AA sequence:RefSeq:WP_011069231.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006841230.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006841231.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006841217.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012359884.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019175580.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
COORDINATES: similar to AA sequence:RefSeq:WP_005293768.1
COORDINATES: similar to AA sequence:RefSeq:WP_005531126.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF020704.2
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_005326095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770520.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350346.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012360835.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402266.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015402268.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012367242.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611325.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009881638.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015402271.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402272.1
COORDINATES: similar to AA sequence:RefSeq:WP_006840759.1
COORDINATES: similar to AA sequence:RefSeq:WP_017824222.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006284591.1
COORDINATES: similar to AA sequence:RefSeq:WP_019160288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770482.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015453104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402255.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006770486.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860216.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847982.1