Brevibacterium linens strain ATCC 19391 plasmid pBLA8, complete sequence.
type: Entry
definition: Brevibacterium linens strain ATCC 19391 plasmid pBLA8, complete sequence.
sequence version: NZ_CP026735.1
sequence date: 2023-04-02
sequence: sequence
division: CON
label: NZ_CP026735.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08162100
keyword: RefSeq
source: Brevibacterium linens
organism: Brevibacterium linens
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Brevibacteriaceae; Brevibacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP026735.1.\nBacteria and source DNA available from Felix d'Herelle Reference\nCenter for bacterial viruses.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-JUN-2017\nAssembly Method :: Celera Assembler v. JUNE-2017\nAssembly Name :: ATCC19391\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 269.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 03:19:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,451\nCDSs (total) :: 3,388\nGenes (coding) :: 3,318\nCDSs (with protein) :: 3,318\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 31 of 70\nPseudo Genes (incomplete) :: 44 of 70\nPseudo Genes (internal stop) :: 3 of 70\nPseudo Genes (multiple problems) :: 8 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7590
topology: circular
so has quality: SO_0000988
location: 1..7590
location: region:1-7590:1
RO_0002162: 1703

NZ_CP026735
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08162100
type: BioSample
SIO_000068: biosample

1
title: Comparative genomic analysis of Brevibacterium aurantiacum sheds light on its evolution and its adaptation to smear-ripened cheeses
author: Moineau, S.
journal: Unpublished

2
title: Direct Submission
author: Levesque, S.
journal: Submitted (09-FEB-2018) Biochimie, Microbiologie et Bio-Informatique, Universite Laval, 2325 rue de L'universite, Quebec, Quebec G1V 0A6, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7590:1
position: 7590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7590:1:source
so part of: sequence
organism: Brevibacterium linens
mol type: genomic DNA
strain: ATCC 19391
culture collection: ATCC:19391
plasmid: pBLA8

1703
type: Taxonomy
SIO_000068: taxonomy

CXR29_RS17165
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17165
old locus tag: CXR29_17200
so part of: sequence
location: 117..1019
location: region:117-1019:1
so has part: feature:117-1019:1:exon
subclass of: SO_0000010

position:117:1
position: 117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1019:1
position: 1019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117-1019:1:exon

CXR29_RS17165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17165
old locus tag: CXR29_17200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010840486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MWLPLWPLASDDLLQGIYRTSRHNALELRYIEANPQSLSNLLVVDIDHPDALMRAMWNRKAWQPNAVVENPANGHAHAVWALAEPVTRTEYARRKPLAYAAAVTEGLRRSVDGDKGYSGLITKNPTHEQWEASWLTDHLYNLDELTEHLTVSDFMPPDSWQRTKRKNPVGLGRNCTLFETVRWDVYRVARTIRKRNEHPTPEDRHDLEAAIVNLCQEMNSTFSEALPASEIRATIRSFYKWITTRYTGWLDSRTTSEEKSAAYHRNTGRQGGLKGGIASGEARRAATRQRIMEAISNGHS
SIO_010081: CXR29_RS17165
subclass of: SO_0000673
so part of: CXR29_RS17165
location: 117..1019
location: region:117-1019:1
so has part: feature:117-1019:1:exon

WP_009885499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117-1019:1:exon

CXR29_RS17170
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17170
old locus tag: CXR29_17205
so part of: sequence
location: 1006..1266
location: region:1006-1266:1
so has part: feature:1006-1266:1:exon
subclass of: SO_0000010

position:1006:1
position: 1006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1266:1
position: 1266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1006-1266:1:exon

CXR29_RS17170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17170
old locus tag: CXR29_17205
inference: COORDINATES: protein motif:HMM:NF025304.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MATRERIPRNGLTIRELAERAGVDPRTIKRWTSDPREVYLSRAEQRRLRIRELRETGLSMRTIANEVGCSVGTVHNALKDQPEDES
SIO_010081: CXR29_RS17170
subclass of: SO_0000673
so part of: CXR29_RS17170
location: 1006..1266
location: region:1006-1266:1
so has part: feature:1006-1266:1:exon

WP_081448679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1006-1266:1:exon

CXR29_RS17175
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17175
old locus tag: CXR29_17210
so part of: sequence
location: 1263..1595
location: region:1263-1595:1
so has part: feature:1263-1595:1:exon
subclass of: SO_0000010

position:1263:1
position: 1263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1595:1
position: 1595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1263-1595:1:exon

CXR29_RS17175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17175
old locus tag: CXR29_17210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTYGQKKKAWASEWAKLRKEYLSGKLMDVLVLPVNGGTSVRWECPACGETGTPVASEKLALTAGRGHMNIHVTPEDIQALEDMKVRRMPPELLSPFQRRRRDELEAHDQ
SIO_010081: CXR29_RS17175
subclass of: SO_0000673
so part of: CXR29_RS17175
location: 1263..1595
location: region:1263-1595:1
so has part: feature:1263-1595:1:exon

WP_009885501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1263-1595:1:exon

CXR29_RS17180
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17180
old locus tag: CXR29_17220
so part of: sequence
location: 2164..2511
location: region:2164-2511:1
so has part: feature:2164-2511:1:exon
subclass of: SO_0000010

position:2164:1
position: 2164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2511:1
position: 2511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2164-2511:1:exon

CXR29_RS17180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17180
old locus tag: CXR29_17220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEDQMVQFYERRRIYPECQSGWYPLILDLDNKIGSIEPGYKVDQIKEKFGGLRFYYDQMSVNDDNRERVDKLVDAAEAKAYTTCEVCGVSDSTVTTSGPSWVKTLCTTHRGKIR
SIO_010081: CXR29_RS17180
subclass of: SO_0000673
so part of: CXR29_RS17180
location: 2164..2511
location: region:2164-2511:1
so has part: feature:2164-2511:1:exon

WP_125178127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2164-2511:1:exon

CXR29_RS17185
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17185
so part of: sequence
location: complement(2649..2951)
location: region:2649-2951:-1
so has part: feature:2649-2951:-1:exon
subclass of: SO_0000010

position:2649:-1
position: 2649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2951:-1
position: 2951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2649-2951:-1:exon

CXR29_RS17185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: Clp protease N-terminal domain-containing protein
translation: MSLPSGELQVGRLCIDGWVTPRLEAAIREAVQLANESPGDYLGVEHVMLALIAQGDSPTLVDRVVPVETVREWRDELSKVIASTKPEIASDSINVSVERE
SIO_010081: CXR29_RS17185
subclass of: SO_0000673
so part of: CXR29_RS17185
location: complement(2649..2951)
location: region:2649-2951:-1
so has part: feature:2649-2951:-1:exon

WP_125178126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2649-2951:-1:exon

CXR29_RS17190
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17190
old locus tag: CXR29_17230
so part of: sequence
location: 3787..4365
location: region:3787-4365:1
so has part: feature:3787-4365:1:exon
subclass of: SO_0000010

position:3787:1
position: 3787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4365:1
position: 4365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3787-4365:1:exon

CXR29_RS17190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17190
old locus tag: CXR29_17230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLAIRPSMKRTATAGVAAISATLLVTLNPGIATGSEVTSTEASQQFATSQSRVELAGVISGEGQNDSASYTLPLEAGDRLVDSGKGDTIVDESGETKFAVSAARATDANGEKVQTEFQIHDGTLAQTISEEEAGEVDYPVSVETHALPYFIVKCLVGLGLSAPDIARIASMGTWASIAGAFGRAAAACVFGK
SIO_010081: CXR29_RS17190
subclass of: SO_0000673
so part of: CXR29_RS17190
location: 3787..4365
location: region:3787-4365:1
so has part: feature:3787-4365:1:exon

WP_127365393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3787-4365:1:exon

CXR29_RS17195
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17195
old locus tag: CXR29_17235
so part of: sequence
location: complement(4979..5206)
location: region:4979-5206:-1
so has part: feature:4979-5206:-1:exon
subclass of: SO_0000010

position:4979:-1
position: 4979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5206:-1
position: 5206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4979-5206:-1:exon

CXR29_RS17195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17195
old locus tag: CXR29_17235
inference: COORDINATES: protein motif:HMM:NF037437.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin VbhA family protein
translation: MSDRFDIESRWPDVFEGLDDQQRRNVVEALAANWHEGWIPNREDVARLTAKVRRDITREEYVAQTVAAAQSARRQ
SIO_010081: CXR29_RS17195
subclass of: SO_0000673
so part of: CXR29_RS17195
location: complement(4979..5206)
location: region:4979-5206:-1
so has part: feature:4979-5206:-1:exon

WP_035279844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4979-5206:-1:exon

CXR29_RS17200
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17200
old locus tag: CXR29_17240
so part of: sequence
location: complement(5501..6076)
location: region:5501-6076:-1
so has part: feature:5501-6076:-1:exon
subclass of: SO_0000010

position:5501:-1
position: 5501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6076:-1
position: 6076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5501-6076:-1:exon

CXR29_RS17200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17200
old locus tag: CXR29_17240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELESLRRSRDYYRRKADRLEFERDMAVLDSQLMKPFNWTTNQPVVEHLTDSEEDELEKLKRYVRQREKDEWRRPFSGMRKTGRRVALSVGEASEFTYELYEDVATLRVKLDTASAARVWQDLGYADEDEWWSSILDAAHDDLGPTAFDDDEHSEPEWLKTHDGATCELGVEGVSPRPQHPPMTCGGTGST
SIO_010081: CXR29_RS17200
subclass of: SO_0000673
so part of: CXR29_RS17200
location: complement(5501..6076)
location: region:5501-6076:-1
so has part: feature:5501-6076:-1:exon

WP_009885496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5501-6076:-1:exon

CXR29_RS17205
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17205
old locus tag: CXR29_17245
so part of: sequence
location: complement(6356..6895)
location: region:6356-6895:-1
so has part: feature:6356-6895:-1:exon
subclass of: SO_0000010

position:6356:-1
position: 6356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6895:-1
position: 6895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6356-6895:-1:exon

CXR29_RS17205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17205
old locus tag: CXR29_17245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009885497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTDDQSPETRAEAAARDLADTGRAVTARAIREAAKVRMAVASATAKAWNDAASEDDHETIPAVPEDVTGRLEAIWADAYRAALAAVTPERDQLRSDVDALRVEVEGLTADVETVEAERDTATTQADTLRKELAEAKAEAEKWSTEAAKHEAALSAVRDQHDKLNERITTLLETQAKREN
SIO_010081: CXR29_RS17205
subclass of: SO_0000673
so part of: CXR29_RS17205
location: complement(6356..6895)
location: region:6356-6895:-1
so has part: feature:6356-6895:-1:exon

WP_096161820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6356-6895:-1:exon

CXR29_RS17870
type: Gene
subclass of: SO_0000704
RO_0002162: 1703
locus tag: CXR29_RS17870
so part of: sequence
location: 7234..7368
location: region:7234-7368:1
so has part: feature:7234-7368:1:exon
subclass of: SO_0000010

position:7234:1
position: 7234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7368:1
position: 7368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7234-7368:1:exon

CXR29_RS17870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1703
locus tag: CXR29_RS17870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRIPAHLSLAAVIVFVVTILAVCPPDRITPILDWFQIVTGTAS
SIO_010081: CXR29_RS17870
subclass of: SO_0000673
so part of: CXR29_RS17870
location: 7234..7368
location: region:7234-7368:1
so has part: feature:7234-7368:1:exon

WP_009885498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7234-7368:1:exon