Brevibacterium linens strain ATCC 19391 plasmid pBLA8, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Brevibacteriaceae; Brevibacterium.
Comparative genomic analysis of Brevibacterium aurantiacum sheds light on its evolution and its adaptation to smear-ripened cheeses
Submitted (09-FEB-2018) Biochimie, Microbiologie et Bio-Informatique, Universite Laval, 2325 rue de L'universite, Quebec, Quebec G1V 0A6, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP026735.1.\nBacteria and source DNA available from Felix d'Herelle Reference\nCenter for bacterial viruses.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-JUN-2017\nAssembly Method :: Celera Assembler v. JUNE-2017\nAssembly Name :: ATCC19391\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 269.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 03:19:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,451\nCDSs (total) :: 3,388\nGenes (coding) :: 3,318\nCDSs (with protein) :: 3,318\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 31 of 70\nPseudo Genes (incomplete) :: 44 of 70\nPseudo Genes (internal stop) :: 3 of 70\nPseudo Genes (multiple problems) :: 8 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010840486.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Clp protease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_009885497.1