Natrinema halophilum strain YPL8 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Natrinema sp. nov., isolated from a salt mine at Yunnan province(Cui,H.-L.)
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084881.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 181.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/02/2023 00:26:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,706\nCDSs (total) :: 4,649\nGenes (coding) :: 4,488\nCDSs (with protein) :: 4,488\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 89 of 161\nPseudo Genes (incomplete) :: 91 of 161\nPseudo Genes (internal stop) :: 42 of 161\nPseudo Genes (multiple problems) :: 49 of 161\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015299631.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414173.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665559.1
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF012271.2
COORDINATES: similar to AA sequence:RefSeq:WP_005576699.1
COORDINATES: protein motif:HMM:NF013827.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_006168559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015984276.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319100.1
COORDINATES: similar to AA sequence:RefSeq:WP_015984272.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576724.1
COORDINATES: similar to AA sequence:RefSeq:WP_005538073.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576731.1
XkdF-like putative serine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005576735.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665542.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012997000.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006168534.1
COORDINATES: similar to AA sequence:RefSeq:WP_012795433.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184246.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187067.1
COORDINATES: protein motif:HMM:NF019884.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946216.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006649672.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666616.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143173.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847016.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181767.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344156.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008425525.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452535.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452537.1
COORDINATES: protein motif:HMM:NF016330.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183602.1
COORDINATES: protein motif:HMM:NF019146.2
COORDINATES: similar to AA sequence:RefSeq:WP_007703876.1
COORDINATES: protein motif:HMM:NF037417.2