Natrinema halophilum strain YPL8 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Natrinema sp. nov., isolated from a salt mine at Yunnan province(Cui,H.-L.)
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084880.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 181.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/02/2023 00:26:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,706\nCDSs (total) :: 4,649\nGenes (coding) :: 4,488\nCDSs (with protein) :: 4,488\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 89 of 161\nPseudo Genes (incomplete) :: 91 of 161\nPseudo Genes (internal stop) :: 42 of 161\nPseudo Genes (multiple problems) :: 49 of 161\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006053458.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006630741.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015299631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273464.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572781.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004217137.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007261151.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_006088672.1
hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF028237.2
histidine kinase N-terminal 7TM domain-containing protein
COORDINATES: protein motif:HMM:NF023899.2
COORDINATES: similar to AA sequence:RefSeq:WP_008014319.1
GO:0008199 - ferric iron binding [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024959.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005578582.1
COORDINATES: similar to AA sequence:RefSeq:WP_005578580.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444080.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008310683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067025.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015142.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648170.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005537081.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703442.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040811.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422551.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054393.1
IS200/IS605 family transposon protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_009487145.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_006600177.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875818.1
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011571298.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517476.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
DNA polymerase domain-containing protein
COORDINATES: protein motif:HMM:NF025217.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111127.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006111142.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111141.1
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: similar to AA sequence:RefSeq:WP_006182303.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691264.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983030.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983029.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014670.1
NrfD/PsrC family molybdoenzyme membrane anchor subunit
COORDINATES: protein motif:HMM:NF021571.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013225.2
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006066654.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424798.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014684.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015321836.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015789917.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091231.1
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012517.2
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004060554.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019640.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF025050.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF004720.0
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: similar to AA sequence:RefSeq:WP_006064657.1
TIGR04024 family LLM class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004214570.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168327.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014053255.1
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF021127.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0045227 - capsule polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006648146.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741577.1
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006885490.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741568.1
COORDINATES: protein motif:HMM:NF018938.2
acyclic terpene utilization AtuA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010044819.1
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_009761089.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005041406.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_009761091.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:TIGR03860.1
GO:0008152 - metabolic process [Evidence IEA]
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
NtaA/DmoA family FMN-dependent monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_011322427.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004050272.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006053459.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630740.1
COORDINATES: protein motif:HMM:NF019265.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004595462.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035103.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088175.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015231.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576651.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432865.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006067112.1
GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015911202.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430936.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945862.1
COORDINATES: protein motif:HMM:NF013199.2
COORDINATES: protein motif:HMM:NF012355.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458720.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541973.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881842.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881843.1
GO:0016829 - lyase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006667272.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694687.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_007257871.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945391.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006883349.1
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_015233456.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007259645.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014039899.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433262.1
COORDINATES: protein motif:HMM:NF028178.2
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564736.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF014709.2
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880657.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013722.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024844.2
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008643270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992622.1
COORDINATES: protein motif:HMM:NF023649.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321432.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006066311.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008162209.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012941276.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006432621.1
COORDINATES: similar to AA sequence:RefSeq:WP_006114881.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111614.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981503.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222305.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611239.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111160.1
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006180527.1
COORDINATES: similar to AA sequence:RefSeq:WP_008010952.1
COORDINATES: protein motif:HMM:NF018827.2
COORDINATES: similar to AA sequence:RefSeq:WP_006671823.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224786.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007698308.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323312.1
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_012945362.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342795.1
COORDINATES: similar to AA sequence:RefSeq:WP_008009807.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004214282.1
COORDINATES: similar to AA sequence:RefSeq:WP_006108653.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089360.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008014715.1
COORDINATES: protein motif:HMM:NF014719.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_008012668.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996879.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742503.1
COORDINATES: protein motif:HMM:NF014790.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091277.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089464.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611935.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007541454.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008453995.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035676.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488131.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065968.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945891.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
COORDINATES: protein motif:HMM:NF023594.2
COORDINATES: similar to AA sequence:RefSeq:WP_007260991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092090.1
COORDINATES: similar to AA sequence:RefSeq:WP_008456674.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006068076.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106897.1
COORDINATES: similar to AA sequence:RefSeq:WP_006166039.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457643.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091191.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006432906.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183355.1
COORDINATES: protein motif:HMM:NF013866.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_004050731.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109158.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092047.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298726.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_008322188.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977316.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142514.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090283.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067007.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060667.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007982938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008441515.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945024.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015322315.1
COORDINATES: similar to AA sequence:RefSeq:WP_014031274.1
COORDINATES: similar to AA sequence:RefSeq:WP_004042417.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078745.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078743.1
COORDINATES: similar to AA sequence:RefSeq:WP_005044930.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517325.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945048.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014031279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945046.1
GO:0047420 - N-acyl-D-amino-acid deacylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014031286.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517298.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945044.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945019.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945020.1
COORDINATES: similar to AA sequence:RefSeq:WP_008312079.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594910.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945041.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078746.1
COORDINATES: similar to AA sequence:RefSeq:WP_004958477.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594920.1
GO:0019239 - deaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006647810.1
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: similar to AA sequence:RefSeq:WP_008423284.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557697.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005557696.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004517310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965489.1
COORDINATES: similar to AA sequence:RefSeq:WP_014031295.1
COORDINATES: similar to AA sequence:RefSeq:WP_008312069.1
selenium-dependent molybdenum cofactor biosynthesis protein YqeB
COORDINATES: similar to AA sequence:RefSeq:WP_004594916.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222658.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222657.1
selenium cofactor biosynthesis protein YqeC
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_008526739.1
hypoxanthine/guanine phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008527560.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008527559.1
COORDINATES: similar to AA sequence:RefSeq:WP_014456793.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012944904.1
COORDINATES: similar to AA sequence:RefSeq:WP_005578658.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108855.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875904.1
GO:0004062 - aryl sulfotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387272.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408753.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577471.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741969.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183959.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006600962.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007110311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289254.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612342.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108084.1
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
cobalamin B12-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_049887803.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577881.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065536.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035611.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996429.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111253.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: similar to AA sequence:RefSeq:WP_008300664.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612031.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043159.1
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_015298795.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035143.1
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: similar to AA sequence:RefSeq:WP_008413810.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007742051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222615.1