Anaerotruncus colihominis strain VE303-02 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus.
Colonization of the live biotherapeutic product VE303 and modulation of the microbiota and metabolites in healthy volunteers
Submitted (18-MAR-2022) Research, Vedanta Biosciences, Inc., 19 Blackstone St., Cambridge, MA 02139, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP094683.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JUL-2016\nAssembly Method :: HGAP v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 297x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 16:04:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,476\nCDSs (total) :: 3,407\nGenes (coding) :: 3,370\nCDSs (with protein) :: 3,370\nGenes (RNA) :: 69\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 12 of 37\nPseudo Genes (incomplete) :: 30 of 37\nPseudo Genes (internal stop) :: 9 of 37\nPseudo Genes (multiple problems) :: 13 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006873725.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF022182.2
COORDINATES: protein motif:HMM:NF019323.2
COORDINATES: protein motif:HMM:NF014689.2
COORDINATES: similar to AA sequence:RefSeq:WP_006874735.1
COORDINATES: similar to AA sequence:RefSeq:WP_006874736.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006354266.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019976.2
COORDINATES: similar to AA sequence:RefSeq:WP_004605070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006874744.1
COORDINATES: similar to AA sequence:RefSeq:WP_006874745.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002603572.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006874749.1
COORDINATES: similar to AA sequence:RefSeq:WP_009297587.1
COORDINATES: similar to AA sequence:RefSeq:WP_009324820.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006874754.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006874759.1
COORDINATES: similar to AA sequence:RefSeq:WP_013658176.1
COORDINATES: protein motif:HMM:NF039407.1
COORDINATES: similar to AA sequence:RefSeq:WP_006874762.1
diacylglycerol kinase family lipid kinase
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: similar to AA sequence:RefSeq:WP_014314588.1
COORDINATES: protein motif:HMM:NF026247.2
COORDINATES: protein motif:HMM:NF015509.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005999988.1
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein