Paraburkholderia hospita strain DSM 17164 chromosome 5, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Species boundaries and ecological features among Paraburkholderia terrae DSMZ17804T, P. hospita DSMZ17164T and P. caribensis DSMZ13236T
Submitted (17-JAN-2018) Microbial Ecology group, University of Groningen, Nijenborgh 7, Groningen, Groningen 9747 AG, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP026109.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. .3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 51.59x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:26:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 10,523\nCDSs (total) :: 10,431\nGenes (coding) :: 10,088\nCDSs (with protein) :: 10,088\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 343\nCDSs (without protein) :: 343\nPseudo Genes (ambiguous residues) :: 0 of 343\nPseudo Genes (frameshifted) :: 154 of 343\nPseudo Genes (incomplete) :: 267 of 343\nPseudo Genes (internal stop) :: 46 of 343\nPseudo Genes (multiple problems) :: 109 of 343\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007738698.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007731376.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738702.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738703.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441934.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007738715.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771287.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_009771288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731339.1
COORDINATES: similar to AA sequence:RefSeq:WP_006477594.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009770542.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432928.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_011487000.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_017685557.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094623.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013592171.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020066033.1
COORDINATES: protein motif:HMM:NF023239.2
COORDINATES: similar to AA sequence:RefSeq:WP_007738136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013592167.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006403178.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049576.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006049577.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006403173.1
COORDINATES: similar to AA sequence:RefSeq:WP_013592159.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002247.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017774065.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007178336.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007246480.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178338.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_006399272.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178341.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178342.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014725906.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007178344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590311.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050444.1
COORDINATES: similar to AA sequence:RefSeq:WP_006999311.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014250404.1
COORDINATES: similar to AA sequence:RefSeq:WP_014631201.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014631200.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014250406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250407.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007588938.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015016318.1
COORDINATES: similar to AA sequence:RefSeq:WP_007581098.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007581097.1
COORDINATES: similar to AA sequence:RefSeq:WP_007581096.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012433212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736207.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736208.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736209.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004185661.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_007736214.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007736215.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007736216.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736220.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736222.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF025878.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007736226.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736230.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007736231.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736232.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736233.1
COORDINATES: protein motif:HMM:NF025045.2
COORDINATES: protein motif:HMM:NF018777.2
COORDINATES: similar to AA sequence:RefSeq:WP_007736236.1
COORDINATES: similar to AA sequence:RefSeq:WP_017776043.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736238.1
COORDINATES: protein motif:HMM:NF014349.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612266.1
COORDINATES: protein motif:HMM:NF015325.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO:0008752 - FMN reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017524102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011489362.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582750.1
COORDINATES: similar to AA sequence:RefSeq:WP_011255155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582753.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007734304.1
COORDINATES: similar to AA sequence:RefSeq:WP_017524107.1
COORDINATES: protein motif:HMM:NF024772.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017451372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011255164.1
COORDINATES: similar to AA sequence:RefSeq:WP_017451370.1
COORDINATES: similar to AA sequence:RefSeq:WP_019700982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738075.1
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF024140.2
COORDINATES: similar to AA sequence:RefSeq:WP_008346113.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018506 - maleylacetate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007855041.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050461.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159838.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017524117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012202807.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016248.2
GO:0008813 - chorismate lyase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193290.1
COORDINATES: protein motif:HMM:NF012506.2
COORDINATES: similar to AA sequence:RefSeq:WP_017525607.1
COORDINATES: similar to AA sequence:RefSeq:WP_019719297.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_012427703.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007582849.1
GO:0042597 - periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338062.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426342.1
COORDINATES: similar to AA sequence:RefSeq:WP_018439410.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017231444.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020068144.1
COORDINATES: similar to AA sequence:RefSeq:WP_017231443.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_011881600.1
COORDINATES: similar to AA sequence:RefSeq:WP_012467836.1
COORDINATES: similar to AA sequence:RefSeq:WP_017231441.1
COORDINATES: similar to AA sequence:RefSeq:WP_011881629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011881597.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019874.2
COORDINATES: similar to AA sequence:RefSeq:WP_007832510.1
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_020202510.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006159966.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566128.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_020702507.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253357.1
COORDINATES: similar to AA sequence:RefSeq:WP_015003048.1
COORDINATES: similar to AA sequence:RefSeq:WP_020069664.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_007588624.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053065.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_017335128.1
COORDINATES: similar to AA sequence:RefSeq:WP_020069046.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_007577924.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007732469.1
COORDINATES: similar to AA sequence:RefSeq:WP_020423950.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426111.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216840.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753895.1
GO:0008465 - glycerate dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007742668.1
COORDINATES: protein motif:HMM:NF033572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193907.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406798.1
COORDINATES: similar to AA sequence:RefSeq:WP_014899862.1
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014193909.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014193633.1
COORDINATES: similar to AA sequence:RefSeq:WP_014899867.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193632.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406804.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0004657 - proline dehydrogenase activity [Evidence IEA]
GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
COORDINATES: similar to AA sequence:RefSeq:WP_007584665.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406806.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006225134.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006218219.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006406809.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406810.1
COORDINATES: similar to AA sequence:RefSeq:WP_015003297.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007745012.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012433006.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012366439.1
COORDINATES: protein motif:HMM:NF036639.2
molybdenum cofactor biosynthesis F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007732964.1
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018418417.1
COORDINATES: similar to AA sequence:RefSeq:WP_017451302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740894.1
COORDINATES: similar to AA sequence:RefSeq:WP_020065692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739344.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338950.1
COORDINATES: similar to AA sequence:RefSeq:WP_010101002.1
COORDINATES: similar to AA sequence:RefSeq:WP_009902255.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016833153.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
alpha,alpha-trehalose-phosphate synthase (UDP-forming)
COORDINATES: similar to AA sequence:RefSeq:WP_009770544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578055.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612103.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007741253.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013124.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012733358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404951.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007743211.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481370.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743213.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007743214.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404957.1
COORDINATES: similar to AA sequence:RefSeq:WP_003112390.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: protein motif:HMM:NF012392.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_009923512.1
COORDINATES: similar to AA sequence:RefSeq:WP_004542836.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493374.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203570.1
COORDINATES: similar to AA sequence:RefSeq:WP_009939444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579186.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579185.1
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013956605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615192.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007739063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920283.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007737820.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007589561.1
TraR/DksA family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012405310.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920670.1
benzoate 1,2-dioxygenase electron transfer component BenC
COORDINATES: similar to AA sequence:RefSeq:WP_007735461.1
COORDINATES: protein motif:HMM:NF037384.2
COORDINATES: similar to AA sequence:RefSeq:WP_013093669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049832.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007577590.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182568.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_009770989.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006397821.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403854.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611295.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Members of this family are phasins (small proteins associated with inclusions such as PHA granules). Note that several different families of phasins have been named PhaP despite very little sequence similarity to each other; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_007177378.1
COORDINATES: protein motif:HMM:NF041602.1
COORDINATES: protein motif:HMM:NF013331.2
COORDINATES: similar to AA sequence:RefSeq:WP_007577963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004453.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585103.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749697.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739536.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589686.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739531.1
COORDINATES: protein motif:HMM:TIGR01840.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016346964.1
COORDINATES: similar to AA sequence:RefSeq:WP_004200815.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_013588020.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253300.1
COORDINATES: similar to AA sequence:RefSeq:WP_004632348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579953.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007579951.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493354.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579946.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093282.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579944.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579943.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579941.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006398911.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012404074.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007589605.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588773.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049382.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012403897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589592.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178425.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341541.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020068335.1
COORDINATES: similar to AA sequence:RefSeq:WP_019700008.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583278.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583279.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748191.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583282.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588747.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068334.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345682.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584109.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423007.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007583297.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584111.1
COORDINATES: similar to AA sequence:RefSeq:WP_015866106.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585007.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588861.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585013.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769812.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769811.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769810.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_007737716.1
COORDINATES: similar to AA sequence:RefSeq:WP_012327935.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017333246.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007741385.1
COORDINATES: similar to AA sequence:RefSeq:WP_020069920.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007741381.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018912192.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004259.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094370.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741372.1
PAS domain-containing hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018435039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435038.1
COORDINATES: protein motif:HMM:NF028458.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741354.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583220.1
COORDINATES: similar to AA sequence:RefSeq:WP_017772331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741343.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741338.1
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007590352.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590350.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008920288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590346.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0045227 - capsule polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007590344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590339.1
COORDINATES: protein motif:HMM:NF014839.2
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_007739070.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735342.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739081.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012371965.1
COORDINATES: protein motif:HMM:NF014898.2
COORDINATES: similar to AA sequence:RefSeq:WP_009914978.1
COORDINATES: similar to AA sequence:RefSeq:WP_009239173.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013210473.1
COORDINATES: protein motif:HMM:NF013853.2
COORDINATES: similar to AA sequence:RefSeq:WP_007734845.1
FIST C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008920893.1
COORDINATES: similar to AA sequence:RefSeq:WP_007580041.1
COORDINATES: protein motif:HMM:NF021517.2
COORDINATES: similar to AA sequence:RefSeq:WP_008921637.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590262.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067945.1
COORDINATES: similar to AA sequence:RefSeq:WP_006756511.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003261352.1
heme-copper oxidase subunit III family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017334946.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432345.1
COORDINATES: similar to AA sequence:RefSeq:WP_003261357.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003274273.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611495.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741216.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956269.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741222.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741225.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011881632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338582.1
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018424861.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013091727.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_007577957.1
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558259.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590348.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920289.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419062.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007745075.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741110.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741109.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007581078.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740703.1
COORDINATES: similar to AA sequence:RefSeq:WP_007730718.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_009770370.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009688003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406520.1
COORDINATES: similar to AA sequence:RefSeq:WP_009890984.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740688.1
COORDINATES: similar to AA sequence:RefSeq:WP_013743582.1
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_009770558.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007739225.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SUF system Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_009770556.1
GO:0005198 - structural molecule activity [Evidence IEA]
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_007739221.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0006534 - cysteine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739216.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770552.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435882.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
SUF system Fe-S cluster assembly regulator
COORDINATES: protein motif:HMM:NF025063.2
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF024823.2
COORDINATES: similar to AA sequence:RefSeq:WP_018419047.1
COORDINATES: similar to AA sequence:RefSeq:WP_010099318.1
COORDINATES: similar to AA sequence:RefSeq:WP_010952952.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422563.1
COORDINATES: protein motif:HMM:NF025303.2
COORDINATES: similar to AA sequence:RefSeq:WP_014006237.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017329335.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590192.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432882.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558138.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049563.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770595.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590129.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771067.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739243.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739238.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737965.1
COORDINATES: similar to AA sequence:RefSeq:WP_014028225.1
COORDINATES: similar to AA sequence:RefSeq:WP_011482984.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018419025.1
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015004217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741418.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004218.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011297799.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012339467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011617622.1
COORDINATES: similar to AA sequence:RefSeq:WP_007747321.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584499.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900659.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011617766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735484.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:NF014825.2
SEC-C metal-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02292.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004639.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741045.1
SurA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007741044.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009770356.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770361.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093724.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770359.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770616.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213850.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_007741030.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007587220.1
COORDINATES: similar to AA sequence:RefSeq:WP_007587292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590137.1
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741152.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741154.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958642.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_013590539.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011871745.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952938.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422771.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611749.1
programmed frameshift; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007740589.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920908.1
COORDINATES: protein motif:HMM:TIGR04416.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_012355561.1
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_007580037.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406434.1
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013204767.1
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: similar to AA sequence:RefSeq:WP_007586642.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438770.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438768.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020565982.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015002915.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438765.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426075.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006050952.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011544710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339485.1
COORDINATES: protein motif:HMM:NF013052.2
GO:0005515 - protein binding [Evidence IEA]; GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015004290.1
COORDINATES: similar to AA sequence:RefSeq:WP_015600445.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406682.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406686.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736808.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441831.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771032.1
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: similar to AA sequence:RefSeq:WP_012213897.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590772.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012352756.1
COORDINATES: similar to AA sequence:RefSeq:WP_019255245.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252247.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770998.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
YbaL family putative K(+) efflux transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009770997.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770995.1
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007579159.1
COORDINATES: similar to AA sequence:RefSeq:WP_000971921.1
COORDINATES: protein motif:HMM:NF022562.2
COORDINATES: similar to AA sequence:RefSeq:WP_007175789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008922969.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771022.1
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: protein motif:HMM:NF025304.2
COORDINATES: similar to AA sequence:RefSeq:WP_013700100.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007181470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181469.1
COORDINATES: similar to AA sequence:RefSeq:WP_008167478.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181467.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017232433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176289.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739538.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067850.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335722.1
D-alanyl-lipoteichoic acid biosynthesis protein DltD
COORDINATES: similar to AA sequence:RefSeq:WP_014973124.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588749.1
COORDINATES: protein motif:HMM:NF013867.2
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007579928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738366.1
GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405272.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007577483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007730202.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748159.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404430.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014252027.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021425.2
COORDINATES: similar to AA sequence:RefSeq:WP_012405087.1
COORDINATES: similar to AA sequence:RefSeq:WP_018442000.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583782.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735464.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417943.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094067.1
COORDINATES: similar to AA sequence:RefSeq:WP_006751529.1
COORDINATES: similar to AA sequence:RefSeq:WP_010099494.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008918637.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335050.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482290.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335048.1
COORDINATES: similar to AA sequence:RefSeq:WP_009239800.1
3-(3-hydroxyphenyl)propionate hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_018417935.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417930.1
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013094059.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402856.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007739735.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739736.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_013209204.1
COORDINATES: similar to AA sequence:RefSeq:WP_006491127.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577589.1
COORDINATES: similar to AA sequence:RefSeq:WP_014896304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006224580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602398.1
COORDINATES: similar to AA sequence:RefSeq:WP_009908260.1
COORDINATES: similar to AA sequence:RefSeq:WP_015601219.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018423695.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018440280.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014895426.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585009.1
COORDINATES: similar to AA sequence:RefSeq:WP_018418577.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433713.1
COORDINATES: similar to AA sequence:RefSeq:WP_004185183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012207420.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014338368.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007742171.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007590309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660001.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660003.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006756270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900618.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_007590301.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770831.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770832.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771253.1
cystathionine gamma-synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015875667.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738656.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771255.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441949.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738663.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771258.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771259.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738668.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771261.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007738672.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771265.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771266.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738677.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738679.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771270.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771271.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771272.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738685.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007731404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738687.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007738688.1
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF015437.2
COORDINATES: similar to AA sequence:RefSeq:WP_007738691.1
COORDINATES: protein motif:HMM:NF023898.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_018433658.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013958495.1