Paraburkholderia hospita strain DSM 17164 chromosome 4, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Species boundaries and ecological features among Paraburkholderia terrae DSMZ17804T, P. hospita DSMZ17164T and P. caribensis DSMZ13236T
Submitted (17-JAN-2018) Microbial Ecology group, University of Groningen, Nijenborgh 7, Groningen, Groningen 9747 AG, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP026108.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. .3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 51.59x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:26:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 10,523\nCDSs (total) :: 10,431\nGenes (coding) :: 10,088\nCDSs (with protein) :: 10,088\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 343\nCDSs (without protein) :: 343\nPseudo Genes (ambiguous residues) :: 0 of 343\nPseudo Genes (frameshifted) :: 154 of 343\nPseudo Genes (incomplete) :: 267 of 343\nPseudo Genes (internal stop) :: 46 of 343\nPseudo Genes (multiple problems) :: 109 of 343\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006749801.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013094414.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699976.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699978.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094410.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094409.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011875483.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011875484.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094406.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094405.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094404.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094402.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217959.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217963.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094397.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217965.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018432868.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432869.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432871.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432872.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432873.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094387.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094386.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432876.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432878.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700007.1
COORDINATES: similar to AA sequence:RefSeq:WP_019937328.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094774.1
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011794807.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432883.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094769.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094765.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094764.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094763.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875514.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217989.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094759.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432904.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094757.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700022.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094752.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432914.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094747.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094746.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875528.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700032.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432929.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875532.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218005.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432932.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432933.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094734.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071143.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094732.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757255.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_013094730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094728.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432943.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020071149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094723.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432946.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182575.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182571.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432952.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954380.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071160.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094714.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690631.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011486259.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700065.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020071169.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071170.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011490132.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014194251.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876266.1
COORDINATES: similar to AA sequence:RefSeq:WP_013541219.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02776.1
COORDINATES: similar to AA sequence:RefSeq:WP_009890522.1
COORDINATES: protein motif:HMM:NF014564.2
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008919415.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008919414.1
COORDINATES: similar to AA sequence:RefSeq:WP_007746724.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018925962.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013691508.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024959.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF025885.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF015734.2
COORDINATES: protein motif:HMM:NF024929.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611305.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011493138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012455660.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436310.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011548505.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012584370.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007589161.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737826.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008920670.1
benzoate 1,2-dioxygenase electron transfer component BenC
COORDINATES: similar to AA sequence:RefSeq:WP_017774496.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733930.1
COORDINATES: protein motif:HMM:NF017081.2
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007732527.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732524.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732523.1
COORDINATES: similar to AA sequence:RefSeq:WP_019575421.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591936.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011487725.1
COORDINATES: similar to AA sequence:RefSeq:WP_019577761.1
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011800660.1
COORDINATES: similar to AA sequence:RefSeq:WP_007828359.1
COORDINATES: similar to AA sequence:RefSeq:WP_004550955.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181564.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488663.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544395.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516321.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419030.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742391.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013089580.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732552.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769953.1
COORDINATES: similar to AA sequence:RefSeq:WP_013435729.1
Members of this family are phasins (small proteins associated with inclusions such as PHA granules). Note that several different families of phasins have been named PhaP despite very little sequence similarity to each other; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: similar to AA sequence:RefSeq:WP_020066484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007581078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008354254.1
COORDINATES: protein motif:HMM:NF025063.2
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007588410.1
COORDINATES: similar to AA sequence:RefSeq:WP_006576252.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007740706.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740710.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740712.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740713.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_013088430.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049476.1
COORDINATES: similar to AA sequence:RefSeq:WP_023098450.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007577597.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736971.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014973117.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742483.1
COORDINATES: protein motif:HMM:NF022603.2
COORDINATES: similar to AA sequence:RefSeq:WP_013091250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007730346.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611516.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735681.1
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: protein motif:HMM:NF013625.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021021.2
COORDINATES: similar to AA sequence:RefSeq:WP_014192792.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558362.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611437.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036442.2
COORDINATES: similar to AA sequence:RefSeq:WP_007579178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579179.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007739576.1
ISKra4-like element ISBusp5 family transposase
COORDINATES: protein motif:HMM:NF013722.2
COORDINATES: similar to AA sequence:RefSeq:WP_004532453.1
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_018420548.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_020066124.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011352111.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068429.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427369.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739412.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020068432.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007176377.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011490959.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049061.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_010094738.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013588257.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006049059.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014725157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490964.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176385.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203570.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012427965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002537.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427962.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339354.1
COORDINATES: protein motif:HMM:NF016777.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612082.1
COORDINATES: protein motif:HMM:NF024908.2
COORDINATES: similar to AA sequence:RefSeq:WP_012248393.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
DDE-type integrase/transposase/recombinase
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007176394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176395.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419825.1
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: similar to AA sequence:RefSeq:WP_019923586.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006464796.1
COORDINATES: similar to AA sequence:RefSeq:WP_013236399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488524.1
GO:0018193 - peptidyl-amino acid modification [Evidence IEA]
aspartyl/asparaginyl beta-hydroxylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012339308.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012405271.1
GH32 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_012339015.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014253245.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013343230.1
GO:0007165 - signal transduction [Evidence IEA]
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_011493845.1
COORDINATES: protein motif:HMM:NF023239.2
COORDINATES: similar to AA sequence:RefSeq:WP_006497952.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012464922.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577257.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403811.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403812.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725630.1
COORDINATES: similar to AA sequence:RefSeq:WP_012363591.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012405247.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006752565.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011882039.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012427374.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739610.1
COORDINATES: similar to AA sequence:RefSeq:WP_010094003.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739601.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007584091.1
COORDINATES: similar to AA sequence:RefSeq:WP_019140180.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007584088.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330817.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490588.1
COORDINATES: similar to AA sequence:RefSeq:WP_011492244.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03355.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: similar to AA sequence:RefSeq:WP_013093669.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007584281.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012206958.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008920297.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007577589.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771032.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771033.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406686.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406682.1
COORDINATES: similar to AA sequence:RefSeq:WP_011486371.1
COORDINATES: similar to AA sequence:RefSeq:WP_031692132.1
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_011489640.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798261.1
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773671.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584007.1
COORDINATES: similar to AA sequence:RefSeq:WP_017778187.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335269.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_007584001.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: protein motif:HMM:NF025025.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018438130.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_007737805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399037.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611088.1
COORDINATES: similar to AA sequence:RefSeq:WP_008331366.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
type ISP restriction/modification enzyme
COORDINATES: nucleotide motif:Rfam:14.4:RF01725
SAM-I-IV-variant riboswitch; SAM riboswitches modulate the expression of downstream genes in response to levels of S-adenosylmethionine; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007736462.1
COORDINATES: similar to AA sequence:RefSeq:WP_042551150.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024676.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194493.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194494.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585349.1
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018436154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406671.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585363.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585364.1
Sir2 family NAD-dependent protein deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_011880301.1
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880299.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584013.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436157.1
WYL domain-containing transcriptional regulator
COORDINATES: protein motif:HMM:NF019976.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF016907.2
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: protein motif:HMM:NF012570.2
COORDINATES: protein motif:HMM:NF025356.2
diguanylate cyclase regulator RdcB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011880961.1
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_007740196.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004286.1
COORDINATES: similar to AA sequence:RefSeq:WP_007586577.1
COORDINATES: similar to AA sequence:RefSeq:WP_018440349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235908.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749697.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: similar to AA sequence:RefSeq:WP_017773228.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010101108.1
bacteriohopanetetrol glucosamine biosynthesis glycosyltransferase HpnI
COORDINATES: similar to AA sequence:RefSeq:WP_007181785.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
hopanoid biosynthesis associated radical SAM protein HpnJ
COORDINATES: similar to AA sequence:RefSeq:WP_004557172.1
COORDINATES: similar to AA sequence:RefSeq:WP_018425079.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF020110.2
sensor histidine kinase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012405438.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769573.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009769574.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880345.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004278.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330416.1
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_007588957.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742350.1
COORDINATES: similar to AA sequence:RefSeq:WP_013088542.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339623.1
COORDINATES: similar to AA sequence:RefSeq:WP_006763800.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_007590315.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012336770.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0055130 - D-alanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008917068.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018436242.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007590327.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018422471.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007584503.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312853.1
FIST C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007590339.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739063.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590346.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0045227 - capsule polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007590348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002413.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007590352.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590354.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590356.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590357.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012734092.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007589549.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741253.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585022.1
COORDINATES: similar to AA sequence:RefSeq:WP_003265798.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053174.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011879712.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008924007.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344483.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF019149.2
recombinase zinc beta ribbon domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012402562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
IS110-like element ISBfun2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010099582.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012217378.1
COORDINATES: similar to AA sequence:RefSeq:WP_004627102.1
class I poly(R)-hydroxyalkanoic acid synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019936744.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438037.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579163.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013952654.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
isocitrate/isopropylmalate family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006047345.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406430.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015004174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406428.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406427.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406426.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582246.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405225.1
COORDINATES: similar to AA sequence:RefSeq:WP_008922175.1
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: similar to AA sequence:RefSeq:WP_020065693.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739344.1
COORDINATES: similar to AA sequence:RefSeq:WP_020065692.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588021.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018438482.1
COORDINATES: protein motif:HMM:NF013715.2
COORDINATES: similar to AA sequence:RefSeq:WP_007590192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406513.1
COORDINATES: similar to AA sequence:RefSeq:WP_006027968.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011493704.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420657.1
COORDINATES: similar to AA sequence:RefSeq:WP_010093029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488042.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094374.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310811.1
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611267.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002520.1
COORDINATES: protein motif:HMM:NF028400.2
COORDINATES: protein motif:HMM:NF037653.2
COORDINATES: similar to AA sequence:RefSeq:WP_012432702.1
glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009897180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402392.1
COORDINATES: similar to AA sequence:RefSeq:WP_007183004.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579263.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577963.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737797.1
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: similar to AA sequence:RefSeq:WP_011297921.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420717.1
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF020846.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612148.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611796.1
IS3-like element ISBxe2 family transposase
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_014028225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405008.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405007.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405006.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405005.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012405004.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007741995.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007732598.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018714753.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_008345390.1
COORDINATES: similar to AA sequence:RefSeq:WP_007580035.1
COORDINATES: similar to AA sequence:RefSeq:WP_008918876.1
COORDINATES: similar to AA sequence:RefSeq:WP_004544900.1
COORDINATES: similar to AA sequence:RefSeq:WP_014971997.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_006046639.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342927.1
3-(3-hydroxy-phenyl)propionate transporter MhpT
COORDINATES: similar to AA sequence:RefSeq:WP_006046637.1
COORDINATES: similar to AA sequence:RefSeq:WP_014724289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012425926.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733840.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312316.1
COORDINATES: similar to AA sequence:RefSeq:WP_007183007.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769537.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579185.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566497.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958816.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952659.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006051066.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006476481.1
COORDINATES: similar to AA sequence:RefSeq:WP_020202557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010101002.1
COORDINATES: similar to AA sequence:RefSeq:WP_008922067.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689228.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007589561.1
TraR/DksA family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008920284.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008920283.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406691.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433351.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093724.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008922575.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011616930.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330317.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956269.1
COORDINATES: similar to AA sequence:RefSeq:WP_012371965.1
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012406434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739571.1
COORDINATES: protein motif:HMM:NF028467.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536826.1
COORDINATES: similar to AA sequence:RefSeq:WP_012401560.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_009770071.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395927.1
COORDINATES: similar to AA sequence:RefSeq:WP_005669230.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770068.1
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739707.1
COORDINATES: similar to AA sequence:RefSeq:WP_013696240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739704.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739703.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009770063.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010395908.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
type II secretion system major pseudopilin GspG
COORDINATES: similar to AA sequence:RefSeq:WP_013696236.1
COORDINATES: similar to AA sequence:RefSeq:WP_012250822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589984.1
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: similar to AA sequence:RefSeq:WP_012431312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589985.1
COORDINATES: similar to AA sequence:RefSeq:WP_012250820.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430927.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420694.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004473.1
COORDINATES: similar to AA sequence:RefSeq:WP_013519596.1
COORDINATES: similar to AA sequence:RefSeq:WP_018914790.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335278.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615300.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006403190.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216788.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013953675.1
COORDINATES: similar to AA sequence:RefSeq:WP_015001916.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006389033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213332.1
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019142999.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742375.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738725.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433421.1
trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018004166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017329247.1
COORDINATES: similar to AA sequence:RefSeq:WP_004542988.1
b(o/a)3-type cytochrome-c oxidase subunit 1
COORDINATES: similar to AA sequence:RefSeq:WP_006048004.1
COORDINATES: similar to AA sequence:RefSeq:WP_013337981.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078815.1
COORDINATES: similar to AA sequence:RefSeq:WP_007730717.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178724.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
programmed frameshift; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: protein motif:HMM:NF014414.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004289.1
COORDINATES: similar to AA sequence:RefSeq:WP_014896028.1
COORDINATES: protein motif:HMM:TIGR03142.1
GO:0051082 - unfolded protein binding [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_012250961.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_012078804.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_009855718.1
COORDINATES: similar to AA sequence:RefSeq:WP_006394224.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012078807.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012078808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078809.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012078810.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
cytochrome c biogenesis heme-transporting ATPase CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_012248797.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_013094046.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013090743.1
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_007179637.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875621.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611695.1
COORDINATES: similar to AA sequence:RefSeq:WP_008352407.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008023527.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070849.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:TIGR01926.1
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020066383.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427006.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566397.1
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_006049580.1
COORDINATES: similar to AA sequence:RefSeq:WP_006478546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403178.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049576.1
COORDINATES: similar to AA sequence:RefSeq:WP_011617474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616455.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402867.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251466.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049577.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066025.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403183.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013587031.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740637.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736606.1
COORDINATES: similar to AA sequence:RefSeq:WP_012212800.1
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006398428.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012337167.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: similar to AA sequence:RefSeq:WP_012216773.1
COORDINATES: similar to AA sequence:RefSeq:WP_019939838.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578597.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013592159.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660578.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_006216725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735573.1
COORDINATES: similar to AA sequence:RefSeq:WP_019428491.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925833.1
COORDINATES: protein motif:HMM:NF020509.2
COORDINATES: similar to AA sequence:RefSeq:WP_013591838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016446159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405601.1
GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]
oxygen-dependent coproporphyrinogen oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_017234618.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336680.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347595.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748917.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695017.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012216240.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588014.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]
GO:0019615 - catechol catabolic process, ortho-cleavage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004552076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588011.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007581048.1
GO:0042925 - benzoate transmembrane transporter activity [Evidence IEA]
GO:0042919 - benzoate transport [Evidence IEA]
benzoate/H(+) symporter BenE family transporter
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011875594.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211075.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_007742394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742396.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004639.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009770544.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015002234.1
COORDINATES: similar to AA sequence:RefSeq:WP_013592377.1
COORDINATES: similar to AA sequence:RefSeq:WP_007587301.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339601.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006046665.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742484.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959656.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578722.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218138.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602293.1
COORDINATES: similar to AA sequence:RefSeq:WP_006491129.1
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_011875954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732705.1