Acidithiobacillus ferriphilus strain GT2 plasmid pGT2, complete sequence.
Bacteria; Pseudomonadota; Acidithiobacillia; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.
Whole genome sequence analysis of the Fe(II)-oxidizing acidophile Acidithiobacillus ferriphilus GT2
Submitted (03-AUG-2021) Systems and Synthetic Biology, Lawrence Livermore National Laboratory, 7000 East Ave, Livermore, CA 94550, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP080537.1.\nBacteria and source DNA available from Dan M. Park, Lawrence\nLivermore National Laboratory.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Improved Phase Assembler (IPA) via SMRT\n Link v. 10.1.0\nAssembly Name :: ctg.000000F\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:12:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,548\nCDSs (total) :: 2,491\nGenes (coding) :: 2,445\nCDSs (with protein) :: 2,445\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 15 of 46\nPseudo Genes (incomplete) :: 34 of 46\nPseudo Genes (internal stop) :: 4 of 46\nPseudo Genes (multiple problems) :: 6 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014293672.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019199486.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013294.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF036730.2
COORDINATES: protein motif:HMM:NF025056.2
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010643049.1
COORDINATES: similar to AA sequence:RefSeq:WP_010643051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010638652.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002395099.1
COORDINATES: similar to AA sequence:RefSeq:WP_002943889.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008786764.1
COORDINATES: similar to AA sequence:RefSeq:WP_014314889.1
HNH endonuclease signature motif containing protein