Acidithiobacillus ferriphilus strain GT2 plasmid pGT2, complete sequence.
type: Entry
definition: Acidithiobacillus ferriphilus strain GT2 plasmid pGT2, complete sequence.
sequence version: NZ_CP080537.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP080537.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN20559762
keyword: RefSeq
source: Acidithiobacillus ferriphilus
organism: Acidithiobacillus ferriphilus
taxonomy: Bacteria; Pseudomonadota; Acidithiobacillia; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP080537.1.\nBacteria and source DNA available from Dan M. Park, Lawrence\nLivermore National Laboratory.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Improved Phase Assembler (IPA) via SMRT\n Link v. 10.1.0\nAssembly Name :: ctg.000000F\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:12:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,548\nCDSs (total) :: 2,491\nGenes (coding) :: 2,445\nCDSs (with protein) :: 2,445\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 15 of 46\nPseudo Genes (incomplete) :: 34 of 46\nPseudo Genes (internal stop) :: 4 of 46\nPseudo Genes (multiple problems) :: 6 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14357
topology: circular
so has quality: SO_0000988
location: 1..14357
location: region:1-14357:1
RO_0002162: 1689834

NZ_CP080537
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN20559762
type: BioSample
SIO_000068: biosample

1
title: Whole genome sequence analysis of the Fe(II)-oxidizing acidophile Acidithiobacillus ferriphilus GT2
author: Guzman, M.
author: Park, D.
author: Jiao, Y.
author: Reed, D.
author: Fujita, Y.
journal: Unpublished

2
title: Direct Submission
author: Guzman, M.
author: Park, D.
author: Jiao, Y.
author: Reed, D.
author: Fujita, Y.
journal: Submitted (03-AUG-2021) Systems and Synthetic Biology, Lawrence Livermore National Laboratory, 7000 East Ave, Livermore, CA 94550, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14357:1
position: 14357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14357:1:source
so part of: sequence
organism: Acidithiobacillus ferriphilus
mol type: genomic DNA
strain: GT2
isolation source: Tailings mud
plasmid: pGT2
country: USA: Colorado
lat lon: 39.5501 N 105.7821 W
collection date: 2021-03

1689834
type: Taxonomy
SIO_000068: taxonomy

K1Y48_RS12610
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12610
old locus tag: K1Y48_12645
so part of: sequence
location: 165..380
location: region:165-380:1
so has part: feature:165-380:1:exon
subclass of: SO_0000010

78190022
type: Gene
SIO_000068: ncbigene

position:165:1
position: 165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:380:1
position: 380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165-380:1:exon

K1Y48_RS12610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12610
old locus tag: K1Y48_12645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGVVWFVVAACGAGIGLGVLVQLADFIHRKALEEAQKEALLLQRDPARPLRSDHIDLSALPAWRRGSADD
SIO_010081: K1Y48_RS12610
subclass of: SO_0000673
so part of: K1Y48_RS12610
location: 165..380
location: region:165-380:1
so has part: feature:165-380:1:exon

WP_229066524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165-380:1:exon

K1Y48_RS12615
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12615
old locus tag: K1Y48_12650
so part of: sequence
location: complement(391..693)
location: region:391-693:-1
so has part: feature:391-693:-1:exon
subclass of: SO_0000010

78190023
type: Gene
SIO_000068: ncbigene

position:391:-1
position: 391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:693:-1
position: 693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391-693:-1:exon

K1Y48_RS12615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12615
old locus tag: K1Y48_12650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSHPLVLEVAKLSQGYIRRGGKRNRRQQQHRMLTFADYAAANGAKTLAEIGGKQVINYWKAHEHLAEKTLYNHWCALCALWDLSGKAGKPPKPTKWTEAG
SIO_010081: K1Y48_RS12615
subclass of: SO_0000673
so part of: K1Y48_RS12615
location: complement(391..693)
location: region:391-693:-1
so has part: feature:391-693:-1:exon

WP_229066526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:391-693:-1:exon

K1Y48_RS12620
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12620
old locus tag: K1Y48_12655
so part of: sequence
location: complement(690..1634)
location: region:690-1634:-1
so has part: feature:690-1634:-1:exon
subclass of: SO_0000010

78190024
type: Gene
SIO_000068: ncbigene

position:690:-1
position: 690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1634:-1
position: 1634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690-1634:-1:exon

K1Y48_RS12620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12620
old locus tag: K1Y48_12655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014293672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase domain-containing protein
translation: MSRNYGIGHRDIYVAGKAFLKQSLHRKEISGASFGTLAQRWSKFARYIKYNTANGVGRLERITRESVIEYGKHLADKVDAEEITAGYAQNLVSAVNSVMKNTPTDWKPVGPVKDCHLPKRSNVRTTVPGGMDRPAYENARTALRESGNTAGEAVAGLARELGLRSEEASLLDARKSLAEADRAGKVTVTLGTKGGCLREVPITTTKQVDALRGAAAAQGQRRSLMPTDATWKTWREGGLRKIRETVQQHTGGGLHDLRAAYACDRYKALTGHDAPVIAGRIVDRAADLAARQQIARELGHGRIDVVSSYVGGRS
SIO_010081: K1Y48_RS12620
subclass of: SO_0000673
so part of: K1Y48_RS12620
location: complement(690..1634)
location: region:690-1634:-1
so has part: feature:690-1634:-1:exon

WP_229066528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:690-1634:-1:exon

K1Y48_RS12625
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12625
old locus tag: K1Y48_12660
so part of: sequence
location: 2802..3248
location: region:2802-3248:1
so has part: feature:2802-3248:1:exon
subclass of: SO_0000010

78190025
type: Gene
SIO_000068: ncbigene

position:2802:1
position: 2802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3248:1
position: 3248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2802-3248:1:exon

K1Y48_RS12625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12625
old locus tag: K1Y48_12660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019199486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MARRVFFSFHYQRDIWRINQIRNIPNVTGCAAAGFQDGSLWEKTKKEGDTAIKKLIDDGLNNTSVTVVFIGEKTAGRKYINYEIEQSIKRGNGIIGVMINHLKDQDGNINTEGAVPAKLTAHGAIIYKYVNHEKLSEWIEAAAKAAGK
SIO_010081: K1Y48_RS12625
subclass of: SO_0000673
so part of: K1Y48_RS12625
location: 2802..3248
location: region:2802-3248:1
so has part: feature:2802-3248:1:exon

WP_229066533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2802-3248:1:exon

K1Y48_RS12630
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12630
old locus tag: K1Y48_12665
so part of: sequence
location: 3379..4536
location: region:3379-4536:1
so has part: feature:3379-4536:1:exon
subclass of: SO_0000010

78190026
type: Gene
SIO_000068: ncbigene

position:3379:1
position: 3379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4536:1
position: 4536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3379-4536:1:exon

K1Y48_RS12630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12630
old locus tag: K1Y48_12665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007013294.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toll/interleukin-1 receptor domain-containing protein
translation: MSVYEIGILGDVTGAERQTLTNTIGALIAEFGLVVGNEVVFNGASLPGRDRHAACAITYFCGQQQEDQEAAQQAIASSVPVIPTVGPMGDFGRYIPKFMQAANGLRRRADDPDMKELAVALLECVGLLRRQRRVFVSYRRVESRSAAVQLHDLLSGRGFDVFLDTHDIRPGEPFQDVLWHRLCDSDVMVMLDTPTYFESKWTRQELGRARAKEIHVLRVVWPEHTPNKQTDFSETIYLDAKQLSGKDGPITDSMVDVIILAVEYLRSRSIASRYMSITGKFRAEVEKIGGTIEGVGAHRAISFRLPDNRKIWAYPVVGVPTAELLNDVADKAVRAEQHEIPILVYDGMGIRGQWIAHLKWLDDNIRTVRAIPVSDAGWTLAGWED
SIO_010081: K1Y48_RS12630
subclass of: SO_0000673
so part of: K1Y48_RS12630
location: 3379..4536
location: region:3379-4536:1
so has part: feature:3379-4536:1:exon

WP_229066535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3379-4536:1:exon

K1Y48_RS12635
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12635
old locus tag: K1Y48_12670
so part of: sequence
location: 4539..5405
location: region:4539-5405:1
so has part: feature:4539-5405:1:exon
subclass of: SO_0000010

78190027
type: Gene
SIO_000068: ncbigene

position:4539:1
position: 4539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5405:1
position: 5405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4539-5405:1:exon

K1Y48_RS12635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12635
old locus tag: K1Y48_12670
inference: COORDINATES: protein motif:HMM:NF036730.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGAIFLSAGVPDPKRGPQYAKTADTVAITAAVSALLHVTLGRRLIVWGGQPAITPMIWVISEGLGLDYAGWVKLYQSRHFKDEFPEDNQRFGNVTYTDDIDRDREKSLRSMRERMFTEHIFSTAVFIGGMGGIIDEFDLMQQLQPQASVLPIISTGGAVLDIAKRTATSMPDLTDDLDYVALFHRHLGISVKEQRYRHPDDQPARLEDRLWRPTAYIKKGTQMKEPGLDDRHRDKDGRIQQKRSDTKNGNLPQPIPGFASKTTLKTMREKTCKTSEGEVRKAAKKRR
SIO_010081: K1Y48_RS12635
subclass of: SO_0000673
so part of: K1Y48_RS12635
location: 4539..5405
location: region:4539-5405:1
so has part: feature:4539-5405:1:exon

WP_229066539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4539-5405:1:exon

K1Y48_RS12640
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12640
old locus tag: K1Y48_12675
so part of: sequence
location: complement(5970..6803)
location: region:5970-6803:-1
so has part: feature:5970-6803:-1:exon
subclass of: SO_0000010

78190028
type: Gene
SIO_000068: ncbigene

position:5970:-1
position: 5970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6803:-1
position: 6803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6803:-1:exon

K1Y48_RS12640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12640
old locus tag: K1Y48_12675
inference: COORDINATES: protein motif:HMM:NF025056.2
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MKIFISWSGELSKQLGEAIKDWIPSVIQSVDPYFTPSDIDKGSRWSVDIANELESSKVGIICLTKDNLESGWVLFEAGALSRQLEKSYVCPILFGITNTDVSGPLKQFQTTEFEKHDMLKLLNTINQLTDAKLPQKNLETTFEKWWPDLNTRIESILSQEDKPQKPIRNDRDILEEILTLNRSMISRMTRPSQASPDTIKELIIGYINIHDEQSDETGGYQETLDSLKILKNPINNILSRYAGTSPDIDKLIDKFNNLTYKISKGKASIEDEDDLPF
SIO_010081: K1Y48_RS12640
subclass of: SO_0000673
so part of: K1Y48_RS12640
location: complement(5970..6803)
location: region:5970-6803:-1
so has part: feature:5970-6803:-1:exon

WP_229066541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6803:-1:exon

K1Y48_RS12645
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12645
old locus tag: K1Y48_12680
so part of: sequence
location: complement(6837..7352)
location: region:6837-7352:-1
so has part: feature:6837-7352:-1:exon
subclass of: SO_0000010

78190029
type: Gene
SIO_000068: ncbigene

position:6837:-1
position: 6837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7352:-1
position: 7352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6837-7352:-1:exon

K1Y48_RS12645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12645
old locus tag: K1Y48_12680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGFDKANQVGGEPCSIPPPALARSHGTRQNDTQGLTTAANKLFMQLSLYIIYMENTMAIHFITSDAKHLLSRFDAHIVQDSQTGKITTWIKSNDGVYYTHKSSDWTKKAWFKPTIESDRLTFNIIKPKDKKVTPLVYAYYHGHIMETFLNHFDNLFSTAVTSSLAERDDNC
SIO_010081: K1Y48_RS12645
subclass of: SO_0000673
so part of: K1Y48_RS12645
location: complement(6837..7352)
location: region:6837-7352:-1
so has part: feature:6837-7352:-1:exon

WP_229066545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6837-7352:-1:exon

K1Y48_RS12650
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12650
old locus tag: K1Y48_12685
so part of: sequence
location: complement(7365..7703)
location: region:7365-7703:-1
so has part: feature:7365-7703:-1:exon
subclass of: SO_0000010

78190030
type: Gene
SIO_000068: ncbigene

position:7365:-1
position: 7365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7703:-1
position: 7703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7365-7703:-1:exon

K1Y48_RS12650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12650
old locus tag: K1Y48_12685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFEDLLNLATRLPWWMDLMMAVFAYIGFHLWHVHFLHKMNPMNEPVPVPVAANPAAAIPNAVNAGLARGGIVVGNIATEVFQYAVPGLFVMGSISSAIREQKMKRRKWDRMP
SIO_010081: K1Y48_RS12650
subclass of: SO_0000673
so part of: K1Y48_RS12650
location: complement(7365..7703)
location: region:7365-7703:-1
so has part: feature:7365-7703:-1:exon

WP_229066516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7365-7703:-1:exon

K1Y48_RS12655
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12655
old locus tag: K1Y48_12690
so part of: sequence
location: complement(7866..8084)
location: region:7866-8084:-1
so has part: feature:7866-8084:-1:exon
subclass of: SO_0000010

78190031
type: Gene
SIO_000068: ncbigene

position:7866:-1
position: 7866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8084:-1
position: 8084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7866-8084:-1:exon

K1Y48_RS12655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12655
old locus tag: K1Y48_12690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010643049.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATTSAERMRWKRARDRGMVWGEGDESQLSDTALIEQLAIACQKTREGQGNAIALGLLREIAARIGLSGKSL
SIO_010081: K1Y48_RS12655
subclass of: SO_0000673
so part of: K1Y48_RS12655
location: complement(7866..8084)
location: region:7866-8084:-1
so has part: feature:7866-8084:-1:exon

WP_229066518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7866-8084:-1:exon

K1Y48_RS12660
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12660
old locus tag: K1Y48_12695
so part of: sequence
location: complement(8691..9548)
location: region:8691-9548:-1
so has part: feature:8691-9548:-1:exon
subclass of: SO_0000010

78190032
type: Gene
SIO_000068: ncbigene

position:8691:-1
position: 8691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9548:-1
position: 9548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8691-9548:-1:exon

K1Y48_RS12660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12660
old locus tag: K1Y48_12695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010643051.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MTGHLHFDRHAQRDFFVADILDAAPKDDLASMEHPIFALKSGDRRVRVYERKGVTVTIKPGHDGCATIHDKDIWIYCISQLVEAINRGREDVGRVVRFTAYDFLVTTNRQTSGEGYRLMGEALARLSGTRIETNIETAGKRERAGFGLIDSWRVIERDKDDKMVAVEISLPDWLCRSVKAMHVLTLNRDYFRIRKPIDRRLYELARKHCGTQSKWCVTTKVLHEKSGSRDAIRNFRMAVKMLAESDELPDYRITFNQEDDAVTFYAKAPKGAIAQIRDVLRSSQK
SIO_010081: K1Y48_RS12660
subclass of: SO_0000673
so part of: K1Y48_RS12660
location: complement(8691..9548)
location: region:8691-9548:-1
so has part: feature:8691-9548:-1:exon

WP_229066519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8691-9548:-1:exon

K1Y48_RS12665
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12665
old locus tag: K1Y48_12700
so part of: sequence
location: complement(9545..9910)
location: region:9545-9910:-1
so has part: feature:9545-9910:-1:exon
subclass of: SO_0000010

78190033
type: Gene
SIO_000068: ncbigene

position:9545:-1
position: 9545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9910:-1
position: 9910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9545-9910:-1:exon

K1Y48_RS12665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12665
old locus tag: K1Y48_12700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010638652.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MLLHVSDEKIFFKSGKRIARLADAGKLVTEEKTISFEDPADLLQVLTTARLAIMRVVLEKPRSITEVAECLGRDRSAVKRDVALLAEAGLVVVEDKPLPGHGRKKEVRSAAGTLRLEAVLA
SIO_010081: K1Y48_RS12665
subclass of: SO_0000673
so part of: K1Y48_RS12665
location: complement(9545..9910)
location: region:9545-9910:-1
so has part: feature:9545-9910:-1:exon

WP_229066546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9545-9910:-1:exon

K1Y48_RS12670
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12670
old locus tag: K1Y48_12705
so part of: sequence
location: complement(9916..10206)
location: region:9916-10206:-1
so has part: feature:9916-10206:-1:exon
subclass of: SO_0000010

78190034
type: Gene
SIO_000068: ncbigene

position:9916:-1
position: 9916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10206:-1
position: 10206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9916-10206:-1:exon

K1Y48_RS12670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12670
old locus tag: K1Y48_12705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002395099.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6516 family protein
translation: MSDRKLVDEVHHISKRRGNGQLRREVWIDDDGKVSRYNLAYINHELCAVDNGRVVGYDNQHGYHHRHYFGDMHPVDFVSFEETEADFEADWMALRR
SIO_010081: K1Y48_RS12670
subclass of: SO_0000673
so part of: K1Y48_RS12670
location: complement(9916..10206)
location: region:9916-10206:-1
so has part: feature:9916-10206:-1:exon

WP_113527672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9916-10206:-1:exon

K1Y48_RS12675
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12675
old locus tag: K1Y48_12710
so part of: sequence
location: complement(10242..10685)
location: region:10242-10685:-1
so has part: feature:10242-10685:-1:exon
subclass of: SO_0000010

78190035
type: Gene
SIO_000068: ncbigene

position:10242:-1
position: 10242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10685:-1
position: 10685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10242-10685:-1:exon

K1Y48_RS12675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12675
old locus tag: K1Y48_12710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKVTVSEAARLVGLARQNLYKNYINEGKISVDRDHLGNPKIDTSELIRVFGEIRMTQNVSSEEQIETGKNAIGDSELSVASQAKDQVIAALRLQVEVAMEREKKAEERELWLRQQLEDAQRQVKLLTHDGGGDSVAKRNPWWRLWK
SIO_010081: K1Y48_RS12675
subclass of: SO_0000673
so part of: K1Y48_RS12675
location: complement(10242..10685)
location: region:10242-10685:-1
so has part: feature:10242-10685:-1:exon

WP_229066520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10242-10685:-1:exon

K1Y48_RS12680
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12680
old locus tag: K1Y48_12715
so part of: sequence
location: complement(10741..11376)
location: region:10741-11376:-1
so has part: feature:10741-11376:-1:exon
subclass of: SO_0000010

78190036
type: Gene
SIO_000068: ncbigene

position:10741:-1
position: 10741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11376:-1
position: 11376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10741-11376:-1:exon

K1Y48_RS12680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12680
old locus tag: K1Y48_12715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943889.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MPVAVATPKKRQRAPEGERKHLTLLEVDRLLAATKDNPRTGLRDRCLILLMFRHGLRVTEACAMRMDQVDLESKILQVQRLKGGLSTTQPLRTEEIRLLKGWMAERERWLRQWRRKEGGTAAALDRHALFLSARGTALSRKTFWALLRRYGELAGLALPPHPHMLRHACGFALADQGADTRLIQDYLGHRNIQHTVRYTATNPVRFEKLWR
SIO_010081: K1Y48_RS12680
subclass of: SO_0000673
so part of: K1Y48_RS12680
location: complement(10741..11376)
location: region:10741-11376:-1
so has part: feature:10741-11376:-1:exon

WP_229066547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10741-11376:-1:exon

K1Y48_RS12685
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12685
old locus tag: K1Y48_12720
so part of: sequence
location: 11766..12722
location: region:11766-12722:1
so has part: feature:11766-12722:1:exon
subclass of: SO_0000010

78190037
type: Gene
SIO_000068: ncbigene

position:11766:1
position: 11766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12722:1
position: 12722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11766-12722:1:exon

K1Y48_RS12685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12685
old locus tag: K1Y48_12720
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008786764.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MGGFTSLELCAGAGGQAIGLEMAGFDHSALVEIEPAACATLRLNRPSWNTVEGDLCHFDGTPYKNIELLAGGVPCPPFSRAGKQLGASDERDLFPEAIRLVDECRPQAVMLENVRGLLDAVFDDYRNKVEKQLKKMGYTPGWKLLNASDFGVSQLRPRVVFVGIRKELSDKFSWPEAMNIEPPTVGELLHDLMKANGWRGADRWRAQANCIAPTLVGGSKKHGGPDLGPTRAKRAWAALGVDGMGLWDEAPSREFVGMPRLTTRMTARVQGFPDDWQFHGRKTAAYRQIGNAFPPPVAAAVAGRILEALTAKRIYRVR
SIO_010081: K1Y48_RS12685
subclass of: SO_0000673
so part of: K1Y48_RS12685
location: 11766..12722
location: region:11766-12722:1
so has part: feature:11766-12722:1:exon

WP_219616923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11766-12722:1:exon

K1Y48_RS12690
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12690
old locus tag: K1Y48_12725
so part of: sequence
location: 12724..13329
location: region:12724-13329:1
so has part: feature:12724-13329:1:exon
subclass of: SO_0000010

78190038
type: Gene
SIO_000068: ncbigene

position:12724:1
position: 12724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13329:1
position: 13329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12724-13329:1:exon

K1Y48_RS12690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12690
old locus tag: K1Y48_12725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014314889.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MTKEKTGGARAKLRAHFLKNIGRVMDSHELRDISGGISEWARRVRELRTEEGYLILTHNDRSDLKPGEYLLENPKPQPAFERAISKETRAFVLDRNGFTCQMCGAVAGEPHPYDPSRKTRLHIGHIIDKSMGGTDDATNLRAICSVCNEGASNSTLTRPDLLKLITQVRRSTSIDQVEILKWLIKKYPTQARNEVNNKNNG
SIO_010081: K1Y48_RS12690
subclass of: SO_0000673
so part of: K1Y48_RS12690
location: 12724..13329
location: region:12724-13329:1
so has part: feature:12724-13329:1:exon

WP_219616922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12724-13329:1:exon

K1Y48_RS12695
type: Gene
subclass of: SO_0000704
RO_0002162: 1689834
locus tag: K1Y48_RS12695
old locus tag: K1Y48_12730
so part of: sequence
location: 13463..13699
location: region:13463-13699:1
so has part: feature:13463-13699:1:exon
subclass of: SO_0000010

78190039
type: Gene
SIO_000068: ncbigene

position:13463:1
position: 13463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13699:1
position: 13699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13463-13699:1:exon

K1Y48_RS12695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1689834
locus tag: K1Y48_RS12695
old locus tag: K1Y48_12730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFVLIGAWFVAYEVVCKFRGETHGATTSFGGVGKVHKLGTFKAWEKKRNAAMWFGLGCITIGSLLQLAGLFIKNLVTF
SIO_010081: K1Y48_RS12695
subclass of: SO_0000673
so part of: K1Y48_RS12695
location: 13463..13699
location: region:13463-13699:1
so has part: feature:13463-13699:1:exon

WP_229066522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13463-13699:1:exon