Chryseobacterium glaciei strain IHBB 10212 plasmid pMP02, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium.
Complete Genome Sequence of Chryseobacterium sp. IHBB 10212
Submitted (11-APR-2016) Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Post Box No.6, Palampur, HP 176061, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP015201.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nAssembly Name :: Chryseobacterium sp. IHBB 10212\nGenome Coverage :: 90\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 22:14:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,418\nCDSs (total) :: 4,314\nGenes (coding) :: 4,293\nCDSs (with protein) :: 4,293\nGenes (RNA) :: 104\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 3\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 11 of 21\nPseudo Genes (incomplete) :: 7 of 21\nPseudo Genes (internal stop) :: 9 of 21\nPseudo Genes (multiple problems) :: 5 of 21\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
India:Glacier at Lahual Spiti, Himachal Pradesh
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023179.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IX secretion system membrane protein PorP/SprF
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018675580.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002981559.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009086192.1