Planktothrix tepida strain PCC9214 plasmid p2.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix.
Submitted (29-SEP-2020) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLR882972.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/22/2023 02:30:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,873\nCDSs (total) :: 5,809\nGenes (coding) :: 5,674\nCDSs (with protein) :: 5,674\nGenes (RNA) :: 64\nrRNAs :: 3, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 135\nCDSs (without protein) :: 135\nPseudo Genes (ambiguous residues) :: 0 of 135\nPseudo Genes (frameshifted) :: 63 of 135\nPseudo Genes (incomplete) :: 79 of 135\nPseudo Genes (internal stop) :: 12 of 135\nPseudo Genes (multiple problems) :: 17 of 135\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017889591.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
3-phosphoserine/phosphohydroxythreonine transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_018400496.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017721954.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012409991.1
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015131585.1
COORDINATES: similar to AA sequence:RefSeq:WP_016951226.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017312230.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: similar to AA sequence:RefSeq:WP_017312231.1
GO:0016020 - membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016876117.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769169.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016873239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599101.1
COORDINATES: similar to AA sequence:RefSeq:WP_007356278.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211892.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217825.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015213403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412871.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015163256.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024547.2
COORDINATES: protein motif:HMM:NF016330.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599568.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016878811.1
COORDINATES: similar to AA sequence:RefSeq:WP_016861375.1
COORDINATES: similar to AA sequence:RefSeq:WP_007356279.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015148235.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016873240.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012596300.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]