Planktothrix tepida strain PCC9214 plasmid p1.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Planktothrix.
Submitted (29-SEP-2020) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLR882971.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/22/2023 02:30:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,873\nCDSs (total) :: 5,809\nGenes (coding) :: 5,674\nCDSs (with protein) :: 5,674\nGenes (RNA) :: 64\nrRNAs :: 3, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 135\nCDSs (without protein) :: 135\nPseudo Genes (ambiguous residues) :: 0 of 135\nPseudo Genes (frameshifted) :: 63 of 135\nPseudo Genes (incomplete) :: 79 of 135\nPseudo Genes (internal stop) :: 12 of 135\nPseudo Genes (multiple problems) :: 17 of 135\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017655427.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547725.1
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015081290.1
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: similar to AA sequence:RefSeq:WP_015197906.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155389.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010994692.1
ssl1498 family light-harvesting-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201573.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010999554.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009547854.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009786295.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786293.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786294.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF039475.1
COORDINATES: protein motif:HMM:NF025033.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009786266.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412871.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015213403.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217825.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006632264.1
COORDINATES: similar to AA sequence:RefSeq:WP_015148804.1
COORDINATES: protein motif:HMM:NF013122.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009786285.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
nuclease-related domain-containing DEAD/DEAH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_006618685.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: similar to AA sequence:RefSeq:WP_015217681.1
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017317331.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: similar to AA sequence:RefSeq:WP_017317332.1
COORDINATES: protein motif:HMM:NF015728.2
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116143.1
GO:0004521 - RNA endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016874573.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015125469.1
COORDINATES: similar to AA sequence:RefSeq:WP_006668783.1
COORDINATES: protein motif:HMM:NF013209.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009788051.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786228.1
COORDINATES: protein motif:HMM:NF026093.2
COORDINATES: similar to AA sequence:RefSeq:WP_009786226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009788056.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786220.1
COORDINATES: similar to AA sequence:RefSeq:WP_002732376.1
COORDINATES: protein motif:HMM:NF025577.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009788061.1
COORDINATES: similar to AA sequence:RefSeq:WP_009786212.1
COORDINATES: similar to AA sequence:RefSeq:WP_009788064.1
COORDINATES: similar to AA sequence:RefSeq:WP_009788065.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036478.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF019537.2