Borreliella mayonii strain MN14-1539 plasmid lp54.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
Submitted (18-MAY-2016) Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, 3156 Rampart Rd., Fort Collins, CO 80521, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015809.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP, SMRTAnalysis v. 2.3.0\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,302\nCDSs (total) :: 1,262\nGenes (coding) :: 1,178\nCDSs (with protein) :: 1,178\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 51 of 84\nPseudo Genes (incomplete) :: 34 of 84\nPseudo Genes (internal stop) :: 29 of 84\nPseudo Genes (multiple problems) :: 24 of 84\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_011187144.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010258570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703769.1
COORDINATES: protein motif:HMM:NF015399.2
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017093.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: similar to AA sequence:RefSeq:WP_011187153.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258115.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695384.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890378.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890379.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695375.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258133.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_010258341.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187165.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010258365.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012784243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703794.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011703795.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257705.1
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703800.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023224.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257720.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695351.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784232.1
COORDINATES: protein motif:HMM:NF017435.2
COORDINATES: protein motif:HMM:NF018966.2
COORDINATES: protein motif:HMM:NF018989.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257105.1
COORDINATES: protein motif:HMM:NF017448.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703811.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703812.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257121.1
COORDINATES: protein motif:HMM:NF016969.2
COORDINATES: similar to AA sequence:RefSeq:WP_011187199.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890392.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703817.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784236.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257157.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023245.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614999.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784240.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]