Borreliella mayonii strain MN14-1539 plasmid lp28-3.
type: Entry
definition: Borreliella mayonii strain MN14-1539 plasmid lp28-3.
sequence version: NZ_CP015806.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP015806.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04979182
keyword: RefSeq
source: Borreliella mayonii (Borrelia mayonii)
organism: Borreliella mayonii
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 28030649
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015806.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP, SMRTAnalysis v. 2.3.0\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,302\nCDSs (total) :: 1,262\nGenes (coding) :: 1,178\nCDSs (with protein) :: 1,178\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 51 of 84\nPseudo Genes (incomplete) :: 34 of 84\nPseudo Genes (internal stop) :: 29 of 84\nPseudo Genes (multiple problems) :: 24 of 84\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 27809
topology: linear
so has quality: SO_0000987
location: 1..27809
location: region:1-27809:1
RO_0002162: 1674146

NZ_CP015806
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04979182
type: BioSample
SIO_000068: biosample

1
title: Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
author: Kingry, L.C.
author: Batra, D.
author: Replogle, A.
author: Rowe, L.A.
author: Pritt, B.S.
author: Petersen, J.M.
journal: PLoS One 11 (12), e0168994 (2016)
pubmed: 28030649
comments: Publication Status: Online-Only

28030649
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kingry, L.C.
author: Batra, D.
author: Rowe, L.
author: Petersen, J.
journal: Submitted (18-MAY-2016) Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, 3156 Rampart Rd., Fort Collins, CO 80521, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27809:1
position: 27809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27809:1:source
so part of: sequence
organism: Borreliella mayonii
mol type: genomic DNA
strain: MN14-1539
isolation source: Blood
host: Homo sapiens
plasmid: lp28-3

1674146
type: Taxonomy
SIO_000068: taxonomy

A7X70_RS05655
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05655
old locus tag: A7X70_05550
so part of: sequence
location: 1559..1762
location: region:1559-1762:1
so has part: feature:1559-1762:1:exon
subclass of: SO_0000010

position:1559:1
position: 1559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1762:1
position: 1762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1559-1762:1:exon

A7X70_RS05655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05655
old locus tag: A7X70_05550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSLQAKLKQALANNKYFVNNNKDINNNKSINSTNKLDNNSLDSVEDNNRSDRKARSISNGEANNQE
SIO_010081: A7X70_RS05655
subclass of: SO_0000673
so part of: A7X70_RS05655
location: 1559..1762
location: region:1559-1762:1
so has part: feature:1559-1762:1:exon

WP_075552701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1559-1762:1:exon

A7X70_RS06925
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06925
so part of: sequence
location: 1737..1910
location: region:1737-1910:1
so has part: feature:1737-1910:1:exon
subclass of: SO_0000010

position:1737:1
position: 1737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1910:1
position: 1910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1737-1910:1:exon

A7X70_RS06925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKQIIKNKSKEKENIIKKSKESNNLGTQINNNLNTKHSNTSKVNNNNVDKKSQQVK
SIO_010081: A7X70_RS06925
subclass of: SO_0000673
so part of: A7X70_RS06925
location: 1737..1910
location: region:1737-1910:1
so has part: feature:1737-1910:1:exon

WP_193402203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1737-1910:1:exon

A7X70_RS05660
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05660
old locus tag: A7X70_05555
so part of: sequence
location: 1879..2313
location: region:1879-2313:1
so has part: feature:1879-2313:1:exon
subclass of: SO_0000010

position:1879:1
position: 1879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2313:1
position: 2313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1879-2313:1:exon

A7X70_RS05660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05660
old locus tag: A7X70_05555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLIKNLNKLNKESNEAITAREIMYEAETFLEKTEKKTADLETTKSKLDKIKSAIEGARSYLNTARKSKYNTNNNTLLLHNLNQEINKVNSSHASVKSHCNDAIGALARSKDDFENTKRKAEGALEEAIKDIPSLGYNYLYYLDS
SIO_010081: A7X70_RS05660
subclass of: SO_0000673
so part of: A7X70_RS05660
location: 1879..2313
location: region:1879-2313:1
so has part: feature:1879-2313:1:exon

WP_235633187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1879-2313:1:exon

A7X70_RS06670
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06670
pseudo: true
so part of: sequence
location: complement(<2542..2619)
location: region:2542-2619:-1
so has part: feature:2542-2619:-1:exon
subclass of: SO_0000010

position:2542:-1
position: 2542
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2619:-1
position: 2619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2542-2619:-1:exon

A7X70_RS06670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: A7X70_RS06670
subclass of: SO_0000673
so part of: A7X70_RS06670
location: complement(<2542..2619)
location: region:2542-2619:-1
so has part: feature:2542-2619:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2542-2619:-1:exon

A7X70_RS05665
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05665
old locus tag: A7X70_05560
so part of: sequence
location: complement(2836..3675)
location: region:2836-3675:-1
so has part: feature:2836-3675:-1:exon
subclass of: SO_0000010

position:2836:-1
position: 2836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3675:-1
position: 3675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2836-3675:-1:exon

A7X70_RS05665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05665
old locus tag: A7X70_05560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNSKLNIIKLNFITAILTSICISCSPFGKVNPNKLKNPTTSKTLKKVKRSNNSRNLKNLNSHTNSENSSENNKNLENESQNSKSSNQNSQEETTISKLENIGKGLEAQKKEEDTQIAKIAKSDSVQYDFLETFKLQRDDYFMFHAKMKLKRIIYPSLNYDTKKILALKEILEKLDTDKNRRVAGKFFETSRDIQLKLEDVHLKKIQDTLRTLSKKEAETLLQDVKRDLKIKQNFAKTLNATIDAYNKNVGGIRTNDEALANHIKNKYSHPLYLLNQAD
SIO_010081: A7X70_RS05665
subclass of: SO_0000673
so part of: A7X70_RS05665
location: complement(2836..3675)
location: region:2836-3675:-1
so has part: feature:2836-3675:-1:exon

WP_075552702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2836-3675:-1:exon

A7X70_RS06675
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06675
old locus tag: A7X70_05565
pseudo: true
so part of: sequence
location: complement(<4070..>5050)
location: region:4070-5050:-1
so has part: feature:4070-5050:-1:exon
subclass of: SO_0000010

position:4070:-1
position: 4070
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5050:-1
position: 5050
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4070-5050:-1:exon

A7X70_RS06675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06675
old locus tag: A7X70_05565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540849.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: A7X70_RS06675
subclass of: SO_0000673
so part of: A7X70_RS06675
location: complement(<4070..>5050)
location: region:4070-5050:-1
so has part: feature:4070-5050:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4070-5050:-1:exon

A7X70_RS07070
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07070
so part of: sequence
location: 7190..7399
location: region:7190-7399:1
so has part: feature:7190-7399:1:exon
subclass of: SO_0000010

position:7190:1
position: 7190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7399:1
position: 7399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7190-7399:1:exon

A7X70_RS07070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07070
inference: COORDINATES: protein motif:HMM:NF033725.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MVYKDLKEQLKLNLENEIDTKIQRMRILCEIKTKKLYKYDSFKSFSQYLKTFVVAKTQAFFYLKLYSKF
SIO_010081: A7X70_RS07070
subclass of: SO_0000673
so part of: A7X70_RS07070
location: 7190..7399
location: region:7190-7399:1
so has part: feature:7190-7399:1:exon

WP_235633188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7190-7399:1:exon

A7X70_RS07075
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07075
so part of: sequence
location: 7423..7533
location: region:7423-7533:1
so has part: feature:7423-7533:1:exon
subclass of: SO_0000010

position:7423:1
position: 7423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7533:1
position: 7533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7423-7533:1:exon

A7X70_RS07075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07075
inference: COORDINATES: protein motif:HMM:NF013808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKELGFENIKKYILKKSFDSNNNISKLDNKNILLRN
SIO_010081: A7X70_RS07075
subclass of: SO_0000673
so part of: A7X70_RS07075
location: 7423..7533
location: region:7423-7533:1
so has part: feature:7423-7533:1:exon

WP_235633196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7423-7533:1:exon

A7X70_RS07080
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07080
so part of: sequence
location: complement(7933..8364)
location: region:7933-8364:-1
so has part: feature:7933-8364:-1:exon
subclass of: SO_0000010

position:7933:-1
position: 7933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8364:-1
position: 8364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7933-8364:-1:exon

A7X70_RS07080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07080
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNTINKYKEVIKKAKEAENKIEKENDYTETKKADAEKKKRNLDNLKTVKDVLTVSRKTIESASVAYANTFAVMASRLSSAEFKKAVNEFKDTAVEKYANGDRETTLLMLLWASITGMAFDNENGFKRAKMFANKATDEVGNK
SIO_010081: A7X70_RS07080
subclass of: SO_0000673
so part of: A7X70_RS07080
location: complement(7933..8364)
location: region:7933-8364:-1
so has part: feature:7933-8364:-1:exon

WP_235633189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7933-8364:-1:exon

A7X70_RS07085
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07085
so part of: sequence
location: complement(8445..8630)
location: region:8445-8630:-1
so has part: feature:8445-8630:-1:exon
subclass of: SO_0000010

position:8445:-1
position: 8445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8630:-1
position: 8630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8445-8630:-1:exon

A7X70_RS07085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKLKAFFYKTITYQGRLNSIYNKYTGSYNTIATYSGCTDYSILDVLATGLMQDVAKPLST
SIO_010081: A7X70_RS07085
subclass of: SO_0000673
so part of: A7X70_RS07085
location: complement(8445..8630)
location: region:8445-8630:-1
so has part: feature:8445-8630:-1:exon

WP_235633190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8445-8630:-1:exon

A7X70_RS07090
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07090
so part of: sequence
location: complement(8752..8928)
location: region:8752-8928:-1
so has part: feature:8752-8928:-1:exon
subclass of: SO_0000010

position:8752:-1
position: 8752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8928:-1
position: 8928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8752-8928:-1:exon

A7X70_RS07090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKGNTFILILATTMFVSCKFYRNGDANKQNTSLSDATGNIGNIGLGILQDGNRKGNY
SIO_010081: A7X70_RS07090
subclass of: SO_0000673
so part of: A7X70_RS07090
location: complement(8752..8928)
location: region:8752-8928:-1
so has part: feature:8752-8928:-1:exon

WP_235633191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8752-8928:-1:exon

A7X70_RS05690
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05690
old locus tag: A7X70_05580
so part of: sequence
location: 9355..10062
location: region:9355-10062:1
so has part: feature:9355-10062:1:exon
subclass of: SO_0000010

position:9355:1
position: 9355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10062:1
position: 10062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9355-10062:1:exon

A7X70_RS05690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05690
old locus tag: A7X70_05580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OspD family protein
translation: MKKLIKILLSSLFLLLLISCSLDNEGVNSKDYESKKQSILGELNQLLEQTTNSLKEAKNTTDNLNASNEANKVVEAVINAVNLISSAADQVKGATKNMHDLVQMAEIDLEKIKESNDKAIVAANVAKEAYNLTKAAEQNMKKLYKEQEEQIKTLSDSDEIEQAKEAAEIAWKAIVKAKDELIDVENAVKEALDKIKAETANSTKLADIEEVAELVLQIAKNVKEIAQEVVTLLNT
SIO_010081: A7X70_RS05690
subclass of: SO_0000673
so part of: A7X70_RS05690
location: 9355..10062
location: region:9355-10062:1
so has part: feature:9355-10062:1:exon

WP_075552703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9355-10062:1:exon

A7X70_RS05695
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05695
old locus tag: A7X70_05585
so part of: sequence
location: complement(10310..10615)
location: region:10310-10615:-1
so has part: feature:10310-10615:-1:exon
subclass of: SO_0000010

position:10310:-1
position: 10310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10615:-1
position: 10615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10310-10615:-1:exon

A7X70_RS05695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05695
old locus tag: A7X70_05585
inference: COORDINATES: protein motif:HMM:NF033721.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MGYIDIAKQNIRSAALFLCKVNESLKEGIIKRLESENRLESENRLESENRPVSQLSRQALNKIENTLKSLESSYFKKGLTMRRKRIIKELIENAKNVLSKS
SIO_010081: A7X70_RS05695
subclass of: SO_0000673
so part of: A7X70_RS05695
location: complement(10310..10615)
location: region:10310-10615:-1
so has part: feature:10310-10615:-1:exon

WP_145924640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10310-10615:-1:exon

A7X70_RS06930
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06930
old locus tag: A7X70_05590
so part of: sequence
location: 11313..11492
location: region:11313-11492:1
so has part: feature:11313-11492:1:exon
subclass of: SO_0000010

position:11313:1
position: 11313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11492:1
position: 11492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11313-11492:1:exon

A7X70_RS06930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06930
old locus tag: A7X70_05590
inference: COORDINATES: protein motif:HMM:NF033729.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MNRIIYLFLNYEIQKIEILKEMFEKLNKNSLKKFSTQSFLHQMALYSISTRQAFKKNIR
SIO_010081: A7X70_RS06930
subclass of: SO_0000673
so part of: A7X70_RS06930
location: 11313..11492
location: region:11313-11492:1
so has part: feature:11313-11492:1:exon

WP_075552704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11313-11492:1:exon

A7X70_RS05710
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05710
old locus tag: A7X70_05600
pseudo: true
so part of: sequence
location: <11532..12714
location: region:11532-12714:1
so has part: feature:11532-12714:1:exon
subclass of: SO_0000010

position:11532:1
position: 11532
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12714:1
position: 12714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11532-12714:1:exon

A7X70_RS05710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05710
old locus tag: A7X70_05600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023104.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: A7X70_RS05710
subclass of: SO_0000673
so part of: A7X70_RS05710
location: <11532..12714
location: region:11532-12714:1
so has part: feature:11532-12714:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11532-12714:1:exon

A7X70_RS05715
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05715
old locus tag: A7X70_05605
so part of: sequence
location: complement(13390..14292)
location: region:13390-14292:-1
so has part: feature:13390-14292:-1:exon
subclass of: SO_0000010

position:13390:-1
position: 13390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14292:-1
position: 14292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13390-14292:-1:exon

A7X70_RS05715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05715
old locus tag: A7X70_05605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703842.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S2/P23 family protein
translation: MKKSISILNIFFFISFFYSCVVGSNYLKNIKTEGLDFELSEENNEKDNKEDNKEDIKEDIKEDIKEDIKNISCINEEFGSSEIKEGEVWSGLFAGSVTWIKPNNLRAIKDRYNNLIEDLKGLKYSYIFSPIRLKTFSWSLFSGDTYHINDDNYKIMGIKVPIAKIIAFESTEEFEKRYEVKNLKLIFEGVNFDFEKYRTDGFAKITLKEVSREAGYINSYNFGVFNDALTDFFTLFYKKSKCSYMLAYLTIEDRQTSKDKTHEIVLDLKLFNDVVKLIFAKYPDLSKEKLKSPIDLMNNK
SIO_010081: A7X70_RS05715
subclass of: SO_0000673
so part of: A7X70_RS05715
location: complement(13390..14292)
location: region:13390-14292:-1
so has part: feature:13390-14292:-1:exon

WP_075552706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13390-14292:-1:exon

A7X70_RS07095
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
gene: eppA
locus tag: A7X70_RS07095
pseudo: true
so part of: sequence
location: complement(16209..>16424)
location: region:16209-16424:-1
so has part: feature:16209-16424:-1:exon
subclass of: SO_0000010

position:16209:-1
position: 16209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16424:-1
position: 16424
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16209-16424:-1:exon

A7X70_RS07095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
gene: eppA
locus tag: A7X70_RS07095
inference: COORDINATES: protein motif:HMM:NF018920.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: exported protein A EppA
SIO_010081: A7X70_RS07095
subclass of: SO_0000673
so part of: A7X70_RS07095
location: complement(16209..>16424)
location: region:16209-16424:-1
so has part: feature:16209-16424:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16209-16424:-1:exon

A7X70_RS06885
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06885
old locus tag: A7X70_05620
so part of: sequence
location: complement(16452..16643)
location: region:16452-16643:-1
so has part: feature:16452-16643:-1:exon
subclass of: SO_0000010

position:16452:-1
position: 16452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16643:-1
position: 16643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16452-16643:-1:exon

A7X70_RS06885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06885
old locus tag: A7X70_05620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703845.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFIIYVVFVLINYCKNFLHLYYLHNSEQDVSKELINKRLDNYDFENENDRNLFLPMLHKLEGV
SIO_010081: A7X70_RS06885
subclass of: SO_0000673
so part of: A7X70_RS06885
location: complement(16452..16643)
location: region:16452-16643:-1
so has part: feature:16452-16643:-1:exon

WP_075552714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16452-16643:-1:exon

A7X70_RS05735
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05735
old locus tag: A7X70_05625
so part of: sequence
location: 17372..18289
location: region:17372-18289:1
so has part: feature:17372-18289:1:exon
subclass of: SO_0000010

position:17372:1
position: 17372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18289:1
position: 18289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17372-18289:1:exon

A7X70_RS05735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05735
old locus tag: A7X70_05625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890347.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKSVISNHKHQTYKNKLLSKICRLKKIISVIIYLNKEFEKKYNTPINKEHFTSKKVKELGVHHQGDILRVLNSNICKENKKKTTINTLRPDLRFLVKLKALEKRILTFSNNFGEFKGKLCIYKVSPIAHKLIDAYFSSTKADLIKKVKDEKDVFKKEKGYFEPQNITENITVYNKNYINIYNKNSIENPFFKRIKSITSNTKKPTVTLKNALLNYKDFKNYLKYDYVVEDIKEFFLSKLNLYKDKIHFMRKTAPYKTDFYILAGEFKDVYTAKWKKNKTTGFSGHAGIIANNVLANILTKGLKFE
SIO_010081: A7X70_RS05735
subclass of: SO_0000673
so part of: A7X70_RS05735
location: 17372..18289
location: region:17372-18289:1
so has part: feature:17372-18289:1:exon

WP_075552708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17372-18289:1:exon

A7X70_RS05740
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05740
old locus tag: A7X70_05630
so part of: sequence
location: 18282..18842
location: region:18282-18842:1
so has part: feature:18282-18842:1:exon
subclass of: SO_0000010

position:18282:1
position: 18282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18842:1
position: 18842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18282-18842:1:exon

A7X70_RS05740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05740
old locus tag: A7X70_05630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MSRLLEKLKQKKASIKISDILIKKDAFSRIEEIDGKKTYYTKIFKHLIDFRVTNKEQRFRLVFQEFNNKDYYFFNLFSLEKNDKFLGIKYGWDRLEKPLFLKKEDNKIYAIKKLYHIEFRFKKGSIKSYILSLRTLLRKKEKETTEYYQFTLNHLEKMESKVYKFYNKKLPDGGILKKWILKNQIL
SIO_010081: A7X70_RS05740
subclass of: SO_0000673
so part of: A7X70_RS05740
location: 18282..18842
location: region:18282-18842:1
so has part: feature:18282-18842:1:exon

WP_075552709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18282-18842:1:exon

A7X70_RS05745
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05745
old locus tag: A7X70_05635
so part of: sequence
location: 18815..19570
location: region:18815-19570:1
so has part: feature:18815-19570:1:exon
subclass of: SO_0000010

position:18815:1
position: 18815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19570:1
position: 19570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18815-19570:1:exon

A7X70_RS05745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05745
old locus tag: A7X70_05635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703849.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDIKKSDIITMASIKGGVGKSALSILFSYVLKELGKKVLLIDLDPQNSLTSYFNRYISNIEKYNAYSMLKGDFHFNECIYKINDYISIIPSHPILGKFNSEAIDYKEIILEHHLNENIQNYNFDYVLLDTPPGLDFLLKNALNVANYIVIPVQVEIWSIESFTILINAVNDITKFRKKIYNISIVENQFIKNRNTIKEVEDLLYKEYREYIKGKVHFSNSIKVLINGRLEPSKKEMYHKEIKDTLKNIFSL
SIO_010081: A7X70_RS05745
subclass of: SO_0000673
so part of: A7X70_RS05745
location: 18815..19570
location: region:18815-19570:1
so has part: feature:18815-19570:1:exon

WP_075552710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18815-19570:1:exon

A7X70_RS05750
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05750
old locus tag: A7X70_05640
so part of: sequence
location: 19666..20286
location: region:19666-20286:1
so has part: feature:19666-20286:1:exon
subclass of: SO_0000010

position:19666:1
position: 19666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20286:1
position: 20286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19666-20286:1:exon

A7X70_RS05750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05750
old locus tag: A7X70_05640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703850.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MGKKENKKQVTLYKRVEISTGEELNLNNNQDEELRNYNELKEQLKLNLKSDINNKIQRMKILYEIKQKELYKYDGFKSFKQFIKSYVIARSQAYMYLKIYEKVLEGAISIEKVKEMGFVATYKDILKNSSSYVYKGDMIEENVEEEDDNLNIPIRILVKDKEVYDFCKKDTKRIYFILERLIKDKKNILSDLMIDYENHRKDKIKK
SIO_010081: A7X70_RS05750
subclass of: SO_0000673
so part of: A7X70_RS05750
location: 19666..20286
location: region:19666-20286:1
so has part: feature:19666-20286:1:exon

WP_075552711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19666-20286:1:exon

A7X70_RS05755
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
gene: bdr
locus tag: A7X70_RS05755
old locus tag: A7X70_05645
so part of: sequence
location: 20467..20805
location: region:20467-20805:1
so has part: feature:20467-20805:1:exon
subclass of: SO_0000010

position:20467:1
position: 20467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20805:1
position: 20805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20467-20805:1:exon

A7X70_RS05755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
gene: bdr
locus tag: A7X70_RS05755
old locus tag: A7X70_05645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023111.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MNENDLYNELVRLGMNKILASDLATRFYHNEITIKDLEIVKPELQGFVRDEISIVKDEINIVKGGIKSLKTEFDSKLKFHNWMIGIVLAFQGAIVDISGSLFFYVLNNKFVK
SIO_010081: A7X70_RS05755
subclass of: SO_0000673
so part of: A7X70_RS05755
location: 20467..20805
location: region:20467-20805:1
so has part: feature:20467-20805:1:exon

WP_235633193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20467-20805:1:exon

A7X70_RS07100
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07100
so part of: sequence
location: complement(21435..21569)
location: region:21435-21569:-1
so has part: feature:21435-21569:-1:exon
subclass of: SO_0000010

position:21435:-1
position: 21435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21569:-1
position: 21569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21435-21569:-1:exon

A7X70_RS07100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07100
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNQLLLDYQDDKDSIIKTDVTKLESHVTTLQNQILEKIKREPS
SIO_010081: A7X70_RS07100
subclass of: SO_0000673
so part of: A7X70_RS07100
location: complement(21435..21569)
location: region:21435-21569:-1
so has part: feature:21435-21569:-1:exon

WP_235633197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21435-21569:-1:exon

A7X70_RS07105
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07105
so part of: sequence
location: complement(21610..21792)
location: region:21610-21792:-1
so has part: feature:21610-21792:-1:exon
subclass of: SO_0000010

position:21610:-1
position: 21610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21792:-1
position: 21792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21610-21792:-1:exon

A7X70_RS07105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07105
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDITKLKKLSKVIILSKRSVGLFNAIREFGRIIDIVILSLHPKKNALDKLEISNLEKLKN
SIO_010081: A7X70_RS07105
subclass of: SO_0000673
so part of: A7X70_RS07105
location: complement(21610..21792)
location: region:21610-21792:-1
so has part: feature:21610-21792:-1:exon

WP_235633198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21610-21792:-1:exon

A7X70_RS07110
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07110
so part of: sequence
location: complement(22083..22220)
location: region:22083-22220:-1
so has part: feature:22083-22220:-1:exon
subclass of: SO_0000010

position:22083:-1
position: 22083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22220:-1
position: 22220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22083-22220:-1:exon

A7X70_RS07110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYNIIVGIFVFLFLTACNPDFNTNQKDVKYHTLVKRDQNPIKRD
SIO_010081: A7X70_RS07110
subclass of: SO_0000673
so part of: A7X70_RS07110
location: complement(22083..22220)
location: region:22083-22220:-1
so has part: feature:22083-22220:-1:exon

WP_235633194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22083-22220:-1:exon

A7X70_RS05765
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05765
old locus tag: A7X70_05655
so part of: sequence
location: 22692..23243
location: region:22692-23243:1
so has part: feature:22692-23243:1:exon
subclass of: SO_0000010

position:22692:1
position: 22692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23243:1
position: 23243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22692-23243:1:exon

A7X70_RS05765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05765
old locus tag: A7X70_05655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883904.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P52 family lipoprotein
translation: MRILVGVCIIALALLGCYLFDKKGQAAQTFFENSESSDMGSDEIVTEGIFSSLKLYASEHRLLVEIKKTLYTLQGLESREFPPLPDYNEEYFNKFFLDLGSERSKDLIKLFGRVKNEQNNKFKSEVYWLYLCIRDLYSPDIKYSGEKGSPEYDRFMPRPTAYQQYLKVKREIERNTFNMVVLY
SIO_010081: A7X70_RS05765
subclass of: SO_0000673
so part of: A7X70_RS05765
location: 22692..23243
location: region:22692-23243:1
so has part: feature:22692-23243:1:exon

WP_075552713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22692-23243:1:exon

A7X70_RS05770
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05770
old locus tag: A7X70_05660
pseudo: true
so part of: sequence
location: complement(23924..24780)
location: region:23924-24780:-1
so has part: feature:23924-24780:-1:exon
subclass of: SO_0000010

position:23924:-1
position: 23924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24780:-1
position: 24780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23924-24780:-1:exon

A7X70_RS05770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05770
old locus tag: A7X70_05660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540500.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S2/P23 family protein
SIO_010081: A7X70_RS05770
subclass of: SO_0000673
so part of: A7X70_RS05770
location: complement(23924..24780)
location: region:23924-24780:-1
so has part: feature:23924-24780:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23924-24780:-1:exon

A7X70_RS07115
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07115
pseudo: true
so part of: sequence
location: <24907..>25457
location: region:24907-25457:1
so has part: feature:24907-25457:1:exon
subclass of: SO_0000010

position:24907:1
position: 24907
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:25457:1
position: 25457
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24907-25457:1:exon

A7X70_RS07115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540434.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: A7X70_RS07115
subclass of: SO_0000673
so part of: A7X70_RS07115
location: <24907..>25457
location: region:24907-25457:1
so has part: feature:24907-25457:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24907-25457:1:exon

A7X70_RS05780
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
gene: tnpA
locus tag: A7X70_RS05780
so part of: sequence
location: complement(25868..26236)
location: region:25868-26236:-1
so has part: feature:25868-26236:-1:exon
subclass of: SO_0000010

position:25868:-1
position: 25868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26236:-1
position: 26236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25868-26236:-1:exon

A7X70_RS05780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
gene: tnpA
locus tag: A7X70_RS05780
inference: COORDINATES: protein motif:HMM:NF033573.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MSQKLNFNNHCVYSINYHLILVTKYRHKCINAKLSSYLCQIIINICYLWKVTLNEFNHDKDNIHLLLEFTPNIQPSKFINNLKTVSSRLIRKKYSTYLDKYYWKPYFWSRSYCLISTGGSFY
SIO_010081: A7X70_RS05780
subclass of: SO_0000673
so part of: A7X70_RS05780
location: complement(25868..26236)
location: region:25868-26236:-1
so has part: feature:25868-26236:-1:exon

WP_145924641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25868-26236:-1:exon

A7X70_RS07120
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07120
old locus tag: A7X70_05675
so part of: sequence
location: 26275..26661
location: region:26275-26661:1
so has part: feature:26275-26661:1:exon
subclass of: SO_0000010

position:26275:1
position: 26275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26661:1
position: 26661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26275-26661:1:exon

A7X70_RS07120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07120
old locus tag: A7X70_05675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614975.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MGINKAYKHRIYPNNNQKKYFSKVFGCVRFLYNKMLSDKKDYYKNNRQNLITYPSKYKEEFPFLKEIDSLALCNVQLNLNSAYNNFFREIKKGNRTQGFPKYKSKKNRQTFRTNILKITMKLKVIKKK
SIO_010081: A7X70_RS07120
subclass of: SO_0000673
so part of: A7X70_RS07120
location: 26275..26661
location: region:26275-26661:1
so has part: feature:26275-26661:1:exon

WP_235633195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26275-26661:1:exon

A7X70_RS07125
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07125
pseudo: true
so part of: sequence
location: 26679..27209
location: region:26679-27209:1
so has part: feature:26679-27209:1:exon
subclass of: SO_0000010

position:26679:1
position: 26679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27209:1
position: 27209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26679-27209:1:exon

A7X70_RS07125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07125
inference: COORDINATES: protein motif:HMM:NF013544.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
SIO_010081: A7X70_RS07125
subclass of: SO_0000673
so part of: A7X70_RS07125
location: 26679..27209
location: region:26679-27209:1
so has part: feature:26679-27209:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26679-27209:1:exon

A7X70_RS07255
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07255
so part of: sequence
location: 27259..27384
location: region:27259-27384:1
so has part: feature:27259-27384:1:exon
subclass of: SO_0000010

position:27259:1
position: 27259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27384:1
position: 27384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27259-27384:1:exon

A7X70_RS07255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDRSFKSLKSYHGMKQEAISIIFDLEIAVHNKGILIIISE
SIO_010081: A7X70_RS07255
subclass of: SO_0000673
so part of: A7X70_RS07255
location: 27259..27384
location: region:27259-27384:1
so has part: feature:27259-27384:1:exon

WP_256381234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27259-27384:1:exon