Borreliella mayonii strain MN14-1539 plasmid lp28-10.
type: Entry
definition: Borreliella mayonii strain MN14-1539 plasmid lp28-10.
sequence version: NZ_CP015805.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP015805.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04979182
keyword: RefSeq
source: Borreliella mayonii (Borrelia mayonii)
organism: Borreliella mayonii
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 28030649
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015805.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP, SMRTAnalysis v. 2.3.0\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,302\nCDSs (total) :: 1,262\nGenes (coding) :: 1,178\nCDSs (with protein) :: 1,178\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 51 of 84\nPseudo Genes (incomplete) :: 34 of 84\nPseudo Genes (internal stop) :: 29 of 84\nPseudo Genes (multiple problems) :: 24 of 84\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 19566
topology: linear
so has quality: SO_0000987
location: 1..19566
location: region:1-19566:1
RO_0002162: 1674146

NZ_CP015805
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04979182
type: BioSample
SIO_000068: biosample

1
title: Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
author: Kingry, L.C.
author: Batra, D.
author: Replogle, A.
author: Rowe, L.A.
author: Pritt, B.S.
author: Petersen, J.M.
journal: PLoS One 11 (12), e0168994 (2016)
pubmed: 28030649
comments: Publication Status: Online-Only

28030649
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kingry, L.C.
author: Batra, D.
author: Rowe, L.
author: Petersen, J.
journal: Submitted (18-MAY-2016) Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, 3156 Rampart Rd., Fort Collins, CO 80521, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19566:1
position: 19566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19566:1:source
so part of: sequence
organism: Borreliella mayonii
mol type: genomic DNA
strain: MN14-1539
isolation source: Blood
host: Homo sapiens
plasmid: lp28-10

1674146
type: Taxonomy
SIO_000068: taxonomy

A7X70_RS07015
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07015
so part of: sequence
location: 362..556
location: region:362-556:1
so has part: feature:362-556:1:exon
subclass of: SO_0000010

position:362:1
position: 362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:556:1
position: 556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362-556:1:exon

A7X70_RS07015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKYLNQLEKGINVIVKFYFNDNQSIIYYKLNYTLEKVCLNLQEYYKLFYKELEQFLKENTTTT
SIO_010081: A7X70_RS07015
subclass of: SO_0000673
so part of: A7X70_RS07015
location: 362..556
location: region:362-556:1
so has part: feature:362-556:1:exon

WP_235633182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:362-556:1:exon

A7X70_RS05550
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05550
so part of: sequence
location: 690..968
location: region:690-968:1
so has part: feature:690-968:1:exon
subclass of: SO_0000010

position:690:1
position: 690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:968:1
position: 968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690-968:1:exon

A7X70_RS05550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNCKNKLSSHLIILVYTLCDTELNSNIGYYSMSFIYRVFNSNIHKYCNTIENIKIDLLEKNLDTLENTPKIITNKFNVEKIYSNFTTQSIIL
SIO_010081: A7X70_RS05550
subclass of: SO_0000673
so part of: A7X70_RS05550
location: 690..968
location: region:690-968:1
so has part: feature:690-968:1:exon

WP_235633183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:690-968:1:exon

A7X70_RS05555
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05555
pseudo: true
so part of: sequence
location: 1411..>1598
location: region:1411-1598:1
so has part: feature:1411-1598:1:exon
subclass of: SO_0000010

position:1411:1
position: 1411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1598:1
position: 1598
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1411-1598:1:exon

A7X70_RS05555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257996.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: A7X70_RS05555
subclass of: SO_0000673
so part of: A7X70_RS05555
location: 1411..>1598
location: region:1411-1598:1
so has part: feature:1411-1598:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1411-1598:1:exon

A7X70_RS07020
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07020
so part of: sequence
location: complement(1820..2191)
location: region:1820-2191:-1
so has part: feature:1820-2191:-1:exon
subclass of: SO_0000010

position:1820:-1
position: 1820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2191:-1
position: 2191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1820-2191:-1:exon

A7X70_RS07020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLSILRYTGGIKLVKVSNESKNALIRSLEIDNENIFVNIYLAMWYLYFPRIAGGSSEKAIKFLQKALKYSKRNLEKYLTDIWLSQGYFLLNKRENEYKKYLNEAENIFPNGFFHKIVIEKVI
SIO_010081: A7X70_RS07020
subclass of: SO_0000673
so part of: A7X70_RS07020
location: complement(1820..2191)
location: region:1820-2191:-1
so has part: feature:1820-2191:-1:exon

WP_235633184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1820-2191:-1:exon

A7X70_RS07025
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07025
so part of: sequence
location: complement(2224..2406)
location: region:2224-2406:-1
so has part: feature:2224-2406:-1:exon
subclass of: SO_0000010

position:2224:-1
position: 2224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2406:-1
position: 2406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2224-2406:-1:exon

A7X70_RS07025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESFKDTRKNYLANIVNFQIVSLSQSLNVKNFSDSYSIFFSAKNDLLDFIPSKFFKDCKN
SIO_010081: A7X70_RS07025
subclass of: SO_0000673
so part of: A7X70_RS07025
location: complement(2224..2406)
location: region:2224-2406:-1
so has part: feature:2224-2406:-1:exon

WP_235633185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2224-2406:-1:exon

A7X70_RS07250
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07250
so part of: sequence
location: complement(2464..2598)
location: region:2464-2598:-1
so has part: feature:2464-2598:-1:exon
subclass of: SO_0000010

position:2464:-1
position: 2464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2598:-1
position: 2598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2464-2598:-1:exon

A7X70_RS07250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYFYYFFFNFNFLYSNSFETLNVEYDNILENYYSGDIDSRLF
SIO_010081: A7X70_RS07250
subclass of: SO_0000673
so part of: A7X70_RS07250
location: complement(2464..2598)
location: region:2464-2598:-1
so has part: feature:2464-2598:-1:exon

WP_256381233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2464-2598:-1:exon

A7X70_RS05565
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05565
old locus tag: A7X70_05465
so part of: sequence
location: complement(2875..3672)
location: region:2875-3672:-1
so has part: feature:2875-3672:-1:exon
subclass of: SO_0000010

position:2875:-1
position: 2875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3672:-1
position: 3672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3672:-1:exon

A7X70_RS05565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05565
old locus tag: A7X70_05465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882863.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKKNNLIIIICFLGLSSCNSENLVLENKDFEFNQREKIIGGNLKLKENGSKSKVTQDDLIIEITKIAKFVKAQTILDRAKIEPLDQFGMKDSLFNNLILSSNREKYSHSENNDIRRKFYSSLNYNEELIRAFGKILNKISSLADNQNLDSLIVRAGQYYSQYELEFSAEKINNQMDKLISLNKEELSIILSKLKELLIFKKRWIDIVTQIINYCRNDTDLNSIKDSLEETTGFIEYIKLMYEYFLKYEILRTETLSSEITKILNK
SIO_010081: A7X70_RS05565
subclass of: SO_0000673
so part of: A7X70_RS05565
location: complement(2875..3672)
location: region:2875-3672:-1
so has part: feature:2875-3672:-1:exon

WP_075552687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3672:-1:exon

A7X70_RS05570
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05570
old locus tag: A7X70_05470
so part of: sequence
location: complement(3995..4573)
location: region:3995-4573:-1
so has part: feature:3995-4573:-1:exon
subclass of: SO_0000010

position:3995:-1
position: 3995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4573:-1
position: 4573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3995-4573:-1:exon

A7X70_RS05570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05570
old locus tag: A7X70_05470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MSKKSANEIAINPRNLNNEKNSIIDANNNHLFNDRERFEFLKNKLKDNVKEDIYNKIEAMYILMEIKNKAYYKLDGYKSFEKFIKDYKLARSQAYTYLRIGGAIQEGAIKQEYLVENGFRQAILFLTNSKNAMEKKLNQNSSRVLRFQFKNQESYLFYKKNHRFTEFFLDKVFSDRKNWIEQVMKEFKEKIY
SIO_010081: A7X70_RS05570
subclass of: SO_0000673
so part of: A7X70_RS05570
location: complement(3995..4573)
location: region:3995-4573:-1
so has part: feature:3995-4573:-1:exon

WP_075552688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3995-4573:-1:exon

A7X70_RS05575
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05575
old locus tag: A7X70_05475
so part of: sequence
location: complement(4604..5419)
location: region:4604-5419:-1
so has part: feature:4604-5419:-1:exon
subclass of: SO_0000010

position:4604:-1
position: 4604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5419:-1
position: 5419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4604-5419:-1:exon

A7X70_RS05575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05575
old locus tag: A7X70_05475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257373.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKRTKIITITSIKGGVGKSTSAIIFATLLSKEYKVLLIDIDTQASTTSYFYEKIKENNIDLKKTNICEVLKDNLDINNCIINIEKNLNLIPSYLTLHSLNGDFYCLNKHKAIDLKLKIEIKRLKINYDYILIDTNPSLDLTLRCALNATHYIVIPMTAEKWTFESYELLEFFIKNLEKLVPIFFIITRFKKNNTHKELLKIMQKKNNFLGIVCEREGLNKKIATNSEFDLKSNYILEYSCILKNLISHIKIYSEKIEISKINCPALDNL
SIO_010081: A7X70_RS05575
subclass of: SO_0000673
so part of: A7X70_RS05575
location: complement(4604..5419)
location: region:4604-5419:-1
so has part: feature:4604-5419:-1:exon

WP_075552689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4604-5419:-1:exon

A7X70_RS05580
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05580
old locus tag: A7X70_05480
so part of: sequence
location: complement(5395..5952)
location: region:5395-5952:-1
so has part: feature:5395-5952:-1:exon
subclass of: SO_0000010

position:5395:-1
position: 5395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5952:-1
position: 5952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5395-5952:-1:exon

A7X70_RS05580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05580
old locus tag: A7X70_05480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MENLMKKLKEKKTQIKIENKNIFVKIEKRDNKNIYHTKIFLDFYAFGNKKNKNYRFFISFRNLLDRKKTETFSLFSLKDEDKFLGISYGCRKPIKNVLRIYEENNKLKTATFSKIHYIQFKFKTGSIFCYVVGISYLLRKDKTKKKYYKSLIKILLTLEKEIYQFYDKKLSNGGLITKWIEKEQK
SIO_010081: A7X70_RS05580
subclass of: SO_0000673
so part of: A7X70_RS05580
location: complement(5395..5952)
location: region:5395-5952:-1
so has part: feature:5395-5952:-1:exon

WP_075552690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5395-5952:-1:exon

A7X70_RS05585
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05585
old locus tag: A7X70_05485
so part of: sequence
location: complement(5962..7041)
location: region:5962-7041:-1
so has part: feature:5962-7041:-1:exon
subclass of: SO_0000010

position:5962:-1
position: 5962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7041:-1
position: 7041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5962-7041:-1:exon

A7X70_RS05585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05585
old locus tag: A7X70_05485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MEKAKKFKNKVQHKLIVLISTLDYINNKYKQYTQSNILYYFNENLKRNGQEPIKIKTLQNYLYKLEKEFEVTTNYYKHLGVNCGTEIYYKLKYQKQKCYHKINKYFKEKKEIRFNLRINTFFKKEFSKKGSVELKECNNNINNKEKETIKRIENLQIKNYAKKCKFITKSFSKILDFDIKKNMKIEIMKELKKIEYFFSKKFKKDNKKKKTIKIKRKELRTILEKTKRTLEKEGLNKKELNIHFKNVYLKYKNKPHFILDQNRYDDLKQIINKTKRSIDKPNTKATQENIKNNILNILFEQLKIKSEIENEVLIKIIKNYLNQIEQPKYSDSFNNKYYYDLLKLIKNKNKSYINRKLII
SIO_010081: A7X70_RS05585
subclass of: SO_0000673
so part of: A7X70_RS05585
location: complement(5962..7041)
location: region:5962-7041:-1
so has part: feature:5962-7041:-1:exon

WP_075552691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5962-7041:-1:exon

A7X70_RS05590
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05590
old locus tag: A7X70_05490
pseudo: true
so part of: sequence
location: complement(<7154..>7720)
location: region:7154-7720:-1
so has part: feature:7154-7720:-1:exon
subclass of: SO_0000010

position:7154:-1
position: 7154
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:7720:-1
position: 7720
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7154-7720:-1:exon

A7X70_RS05590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05590
old locus tag: A7X70_05490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05590
subclass of: SO_0000673
so part of: A7X70_RS05590
location: complement(<7154..>7720)
location: region:7154-7720:-1
so has part: feature:7154-7720:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7154-7720:-1:exon

A7X70_RS06645
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06645
old locus tag: A7X70_05495
pseudo: true
so part of: sequence
location: complement(<7728..8966)
location: region:7728-8966:-1
so has part: feature:7728-8966:-1:exon
subclass of: SO_0000010

position:7728:-1
position: 7728
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:8966:-1
position: 8966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7728-8966:-1:exon

A7X70_RS06645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06645
old locus tag: A7X70_05495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486319.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS06645
subclass of: SO_0000673
so part of: A7X70_RS06645
location: complement(<7728..8966)
location: region:7728-8966:-1
so has part: feature:7728-8966:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7728-8966:-1:exon

A7X70_RS07030
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07030
pseudo: true
so part of: sequence
location: complement(<8956..9585)
location: region:8956-9585:-1
so has part: feature:8956-9585:-1:exon
subclass of: SO_0000010

position:8956:-1
position: 8956
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9585:-1
position: 9585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8956-9585:-1:exon

A7X70_RS07030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486319.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07030
subclass of: SO_0000673
so part of: A7X70_RS07030
location: complement(<8956..9585)
location: region:8956-9585:-1
so has part: feature:8956-9585:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8956-9585:-1:exon

A7X70_RS07035
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07035
pseudo: true
so part of: sequence
location: complement(<9568..10260)
location: region:9568-10260:-1
so has part: feature:9568-10260:-1:exon
subclass of: SO_0000010

position:9568:-1
position: 9568
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10260:-1
position: 10260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9568-10260:-1:exon

A7X70_RS07035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07035
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07035
subclass of: SO_0000673
so part of: A7X70_RS07035
location: complement(<9568..10260)
location: region:9568-10260:-1
so has part: feature:9568-10260:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9568-10260:-1:exon

A7X70_RS07040
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07040
pseudo: true
so part of: sequence
location: complement(<10240..10800)
location: region:10240-10800:-1
so has part: feature:10240-10800:-1:exon
subclass of: SO_0000010

position:10240:-1
position: 10240
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10800:-1
position: 10800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10240-10800:-1:exon

A7X70_RS07040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07040
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07040
subclass of: SO_0000673
so part of: A7X70_RS07040
location: complement(<10240..10800)
location: region:10240-10800:-1
so has part: feature:10240-10800:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10240-10800:-1:exon

A7X70_RS05605
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05605
old locus tag: A7X70_05505
pseudo: true
so part of: sequence
location: complement(<10790..11356)
location: region:10790-11356:-1
so has part: feature:10790-11356:-1:exon
subclass of: SO_0000010

position:10790:-1
position: 10790
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11356:-1
position: 11356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10790-11356:-1:exon

A7X70_RS05605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05605
old locus tag: A7X70_05505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05605
subclass of: SO_0000673
so part of: A7X70_RS05605
location: complement(<10790..11356)
location: region:10790-11356:-1
so has part: feature:10790-11356:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10790-11356:-1:exon

A7X70_RS06655
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06655
old locus tag: A7X70_05510
pseudo: true
so part of: sequence
location: complement(<11371..>11966)
location: region:11371-11966:-1
so has part: feature:11371-11966:-1:exon
subclass of: SO_0000010

position:11371:-1
position: 11371
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11966:-1
position: 11966
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11371-11966:-1:exon

A7X70_RS06655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06655
old locus tag: A7X70_05510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS06655
subclass of: SO_0000673
so part of: A7X70_RS06655
location: complement(<11371..>11966)
location: region:11371-11966:-1
so has part: feature:11371-11966:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11371-11966:-1:exon

A7X70_RS07045
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07045
pseudo: true
so part of: sequence
location: complement(<12022..12711)
location: region:12022-12711:-1
so has part: feature:12022-12711:-1:exon
subclass of: SO_0000010

position:12022:-1
position: 12022
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12711:-1
position: 12711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12022-12711:-1:exon

A7X70_RS07045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07045
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07045
subclass of: SO_0000673
so part of: A7X70_RS07045
location: complement(<12022..12711)
location: region:12022-12711:-1
so has part: feature:12022-12711:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12022-12711:-1:exon

A7X70_RS07050
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07050
pseudo: true
so part of: sequence
location: complement(<12694..13326)
location: region:12694-13326:-1
so has part: feature:12694-13326:-1:exon
subclass of: SO_0000010

position:12694:-1
position: 12694
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13326:-1
position: 13326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12694-13326:-1:exon

A7X70_RS07050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07050
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07050
subclass of: SO_0000673
so part of: A7X70_RS07050
location: complement(<12694..13326)
location: region:12694-13326:-1
so has part: feature:12694-13326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12694-13326:-1:exon

A7X70_RS07055
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07055
pseudo: true
so part of: sequence
location: complement(<13306..>13860)
location: region:13306-13860:-1
so has part: feature:13306-13860:-1:exon
subclass of: SO_0000010

position:13306:-1
position: 13306
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13860:-1
position: 13860
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13306-13860:-1:exon

A7X70_RS07055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07055
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07055
subclass of: SO_0000673
so part of: A7X70_RS07055
location: complement(<13306..>13860)
location: region:13306-13860:-1
so has part: feature:13306-13860:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13306-13860:-1:exon

A7X70_RS07060
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07060
so part of: sequence
location: complement(13844..14485)
location: region:13844-14485:-1
so has part: feature:13844-14485:-1:exon
subclass of: SO_0000010

position:13844:-1
position: 13844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14485:-1
position: 14485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13844-14485:-1:exon

A7X70_RS07060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07060
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKSAVETITETANKAAKAASGGDTSIGNVVNANAAGAGAGAADASSVQGIAKGMKAIVDAAEATAGKAAGKEKKELLKAASDGNATGTGNADAGHLFSGAADQGASDAHAQKAAGAINAVSGEQILKEIVDAAEKSGAAGAGAAADQANNPISAAIGADQGNGAFGNGGMNQNSKVAAAIVLRGMAKNGKFAVANAAHANHKDGVKSAVEGDC
SIO_010081: A7X70_RS07060
subclass of: SO_0000673
so part of: A7X70_RS07060
location: complement(13844..14485)
location: region:13844-14485:-1
so has part: feature:13844-14485:-1:exon

WP_235633186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13844-14485:-1:exon

A7X70_RS07065
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07065
pseudo: true
so part of: sequence
location: complement(<14465..>15046)
location: region:14465-15046:-1
so has part: feature:14465-15046:-1:exon
subclass of: SO_0000010

position:14465:-1
position: 14465
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15046:-1
position: 15046
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14465-15046:-1:exon

A7X70_RS07065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS07065
subclass of: SO_0000673
so part of: A7X70_RS07065
location: complement(<14465..>15046)
location: region:14465-15046:-1
so has part: feature:14465-15046:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14465-15046:-1:exon

A7X70_RS05625
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05625
old locus tag: A7X70_05525
pseudo: true
so part of: sequence
location: complement(<15075..15686)
location: region:15075-15686:-1
so has part: feature:15075-15686:-1:exon
subclass of: SO_0000010

position:15075:-1
position: 15075
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15686:-1
position: 15686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15075-15686:-1:exon

A7X70_RS05625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05625
old locus tag: A7X70_05525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05625
subclass of: SO_0000673
so part of: A7X70_RS05625
location: complement(<15075..15686)
location: region:15075-15686:-1
so has part: feature:15075-15686:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15075-15686:-1:exon

A7X70_RS05630
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05630
old locus tag: A7X70_05530
pseudo: true
so part of: sequence
location: complement(<15647..16311)
location: region:15647-16311:-1
so has part: feature:15647-16311:-1:exon
subclass of: SO_0000010

position:15647:-1
position: 15647
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:16311:-1
position: 16311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15647-16311:-1:exon

A7X70_RS05630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05630
old locus tag: A7X70_05530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05630
subclass of: SO_0000673
so part of: A7X70_RS05630
location: complement(<15647..16311)
location: region:15647-16311:-1
so has part: feature:15647-16311:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15647-16311:-1:exon

A7X70_RS05635
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05635
old locus tag: A7X70_05535
pseudo: true
so part of: sequence
location: complement(<16301..16924)
location: region:16301-16924:-1
so has part: feature:16301-16924:-1:exon
subclass of: SO_0000010

position:16301:-1
position: 16301
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:16924:-1
position: 16924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16301-16924:-1:exon

A7X70_RS05635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05635
old locus tag: A7X70_05535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05635
subclass of: SO_0000673
so part of: A7X70_RS05635
location: complement(<16301..16924)
location: region:16301-16924:-1
so has part: feature:16301-16924:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16301-16924:-1:exon

A7X70_RS05640
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05640
old locus tag: A7X70_05540
pseudo: true
so part of: sequence
location: complement(<16914..17906)
location: region:16914-17906:-1
so has part: feature:16914-17906:-1:exon
subclass of: SO_0000010

position:16914:-1
position: 16914
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17906:-1
position: 17906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16914-17906:-1:exon

A7X70_RS05640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05640
old locus tag: A7X70_05540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: A7X70_RS05640
subclass of: SO_0000673
so part of: A7X70_RS05640
location: complement(<16914..17906)
location: region:16914-17906:-1
so has part: feature:16914-17906:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16914-17906:-1:exon

A7X70_RS05645
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05645
old locus tag: A7X70_05545
so part of: sequence
location: 18343..19473
location: region:18343-19473:1
so has part: feature:18343-19473:1:exon
subclass of: SO_0000010

position:18343:1
position: 18343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19473:1
position: 19473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18343-19473:1:exon

A7X70_RS05645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05645
old locus tag: A7X70_05545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008882912.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKKISSVILLTAFIVFINCKSNAGEVSNTNDPEKEFYQSIIKLGNGFLDVFTSFGGLVADAFGLKADPKKSEVQKYFTSIATKLETTISSLASLPKGNGEGTTGKTGNDTANDAGNAVDSAIKEISEMLKAIADAAKEAAKAASGGDTSIGNVVNANAGAGAAAGAADASSVKGIAKGMKAIVDAAEATAGKAAGSKEEKKELLKAASATGTGNEDAGHLFSGAANQGASNAQAQKAAGAINAVSGEQILKEIVDAAEKSGDGAGQQADQANNPISAAIGAAQAGAAFTAGNGNMNQNSKVAAAIVLRGMAKDGKFAVADAAHANHKDGVKSAVESGVNKTILALTGIVKEAVDAGLKTIVTAVKSAGGDNTKAKN
SIO_010081: A7X70_RS05645
subclass of: SO_0000673
so part of: A7X70_RS05645
location: 18343..19473
location: region:18343-19473:1
so has part: feature:18343-19473:1:exon

WP_075552700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18343-19473:1:exon