Borreliella mayonii strain MN14-1539 plasmid lp25.
type: Entry
definition: Borreliella mayonii strain MN14-1539 plasmid lp25.
sequence version: NZ_CP015804.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP015804.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04979182
keyword: RefSeq
source: Borreliella mayonii (Borrelia mayonii)
organism: Borreliella mayonii
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 28030649
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015804.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP, SMRTAnalysis v. 2.3.0\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,302\nCDSs (total) :: 1,262\nGenes (coding) :: 1,178\nCDSs (with protein) :: 1,178\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 51 of 84\nPseudo Genes (incomplete) :: 34 of 84\nPseudo Genes (internal stop) :: 29 of 84\nPseudo Genes (multiple problems) :: 24 of 84\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 24696
topology: linear
so has quality: SO_0000987
location: 1..24696
location: region:1-24696:1
RO_0002162: 1674146

NZ_CP015804
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04979182
type: BioSample
SIO_000068: biosample

1
title: Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
author: Kingry, L.C.
author: Batra, D.
author: Replogle, A.
author: Rowe, L.A.
author: Pritt, B.S.
author: Petersen, J.M.
journal: PLoS One 11 (12), e0168994 (2016)
pubmed: 28030649
comments: Publication Status: Online-Only

28030649
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kingry, L.C.
author: Batra, D.
author: Rowe, L.
author: Petersen, J.
journal: Submitted (18-MAY-2016) Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, 3156 Rampart Rd., Fort Collins, CO 80521, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24696:1
position: 24696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24696:1:source
so part of: sequence
organism: Borreliella mayonii
mol type: genomic DNA
strain: MN14-1539
isolation source: Blood
host: Homo sapiens
plasmid: lp25

1674146
type: Taxonomy
SIO_000068: taxonomy

A7X70_RS05440
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05440
old locus tag: A7X70_05400
so part of: sequence
location: complement(415..4230)
location: region:415-4230:-1
so has part: feature:415-4230:-1:exon
subclass of: SO_0000010

position:415:-1
position: 415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4230:-1
position: 4230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415-4230:-1:exon

A7X70_RS05440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05440
old locus tag: A7X70_05400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703862.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MKTNDIVKTNNPNISLYKQLSKDFIRKENISKLKDFFILIKNKLFSIDDNSTEANIESLLKSIFEELNYSVEQQKAGQIEGVESRIDMLLFENDKDKVAFNNKVKEAKKNNEPIPVENILLIAEIKRPAFSFHTKDKVKEAEDQLYRYLNQYQKYYGILSNGKVWRLYDKSKVLYGEKRYIEFNFSKIEEKEEYKEQEWFVLFIYLIRKERFLKRSNIIEVEKEQIAKEKEIIQKTLREILYERPDDSIVFKIAKNIYDKEFKASDKEITGHILASILEESILFILRIFFIAYIEDNEIFKKILEENKLYRSSVSFRYFFYDENTKNKLGYKKIITIFNLLDKGSDAIKFPIFNGGLFAEDKVKYLNNESLLSISELEEILVKILFFEEKNIKDKKFVEYSKLDPKSFGELYETLLEYDLRIADTTVHRIIEDGVYLIRTEEELANKQVNKVATYYQGNIYLTSRSLDRKKSGAYYTPDDLTDFMVTSSIEEQLKTKSPLDIKIIDNSCGSGHFLISCLDYLTEKVWYDLDKFEDVKKELDKEYRAILKESEEYDVQDSISKELVLRRILLKKCIYGVDINPISIEITMLSLWINTFIFGTPLSFIEHHIKVGNALLGYTKDEFFDITKKKFESGFSLFKKRIKEITTILEDIYQKIKGINDTTKEDIEKSKKIYKEYEESEDIDNLKIIFSLIKLYSLSFDKSLNIEFSDITSVISLIENILGNKISIEDKEKIEKIKKLSSYYKFFHYGIEFPDIQEGFDIVIGNPPWEKTKFNEAEFFSKHIPGYRKLSIKEQNKIKQEILSKDNHPLNIEYNEEKNSISTINNIYKFDFKDFTSGGDPNLFRYFVAFNLKLIKRKGNLTYLVPSSLWSEFSSKTLRKHIFANYKLNYIYQFENKKRFKDVHSSFKFSIFQLSNAEESTSSFKAKFMIQNDDNIIKEITGDLKDNKYDPYRGIELSIDQIKELSPIQESIIEFKDNEEFSLINKIFSQFSTLSEEYVDFKQGLNLTNYKAFYKEYNNENFIFLYSGSNVHQFNSRFFEDKDAKESSKLLWIDKKDLEKALTKDNHFQTERVFYRGIARNTDERTMISTLCPRNCYCVHSIYVNYEKIPISIYKKLFIVSIFNTFVFDFMIRRFVNSNVLKPCLYQCSMPQPEEKEILSNSLYLNLVKNTSLMIAKNDSDNFKYLLYLEHFELSKEKVNKILKLDKEDEFFKEKENENNFIVASLYSLTKEDFIILLSDFKALKNKKGEDYISSLIKGYENYLLNNKIF
SIO_010081: A7X70_RS05440
subclass of: SO_0000673
so part of: A7X70_RS05440
location: complement(415..4230)
location: region:415-4230:-1
so has part: feature:415-4230:-1:exon

WP_075552676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:415-4230:-1:exon

A7X70_RS06635
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06635
pseudo: true
so part of: sequence
location: 4802..>4918
location: region:4802-4918:1
so has part: feature:4802-4918:1:exon
subclass of: SO_0000010

position:4802:1
position: 4802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4918:1
position: 4918
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4802-4918:1:exon

A7X70_RS06635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012784249.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
SIO_010081: A7X70_RS06635
subclass of: SO_0000673
so part of: A7X70_RS06635
location: 4802..>4918
location: region:4802-4918:1
so has part: feature:4802-4918:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4802-4918:1:exon

A7X70_RS07240
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07240
so part of: sequence
location: complement(5019..5141)
location: region:5019-5141:-1
so has part: feature:5019-5141:-1:exon
subclass of: SO_0000010

position:5019:-1
position: 5019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5141:-1
position: 5141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5019-5141:-1:exon

A7X70_RS07240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKINISKIFEEFENAIIIDMESASAAYIVYNFNIPFIIAI
SIO_010081: A7X70_RS07240
subclass of: SO_0000673
so part of: A7X70_RS07240
location: complement(5019..5141)
location: region:5019-5141:-1
so has part: feature:5019-5141:-1:exon

WP_010258766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5019-5141:-1:exon

A7X70_RS06990
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06990
so part of: sequence
location: complement(5961..6128)
location: region:5961-6128:-1
so has part: feature:5961-6128:-1:exon
subclass of: SO_0000010

position:5961:-1
position: 5961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6128:-1
position: 6128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5961-6128:-1:exon

A7X70_RS06990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: permease
translation: MIVSGDQFIDLKYMNKIIKNFKDVIVFEMEGVVIGHVAHTFNVHFIVIGPYGYFK
SIO_010081: A7X70_RS06990
subclass of: SO_0000673
so part of: A7X70_RS06990
location: complement(5961..6128)
location: region:5961-6128:-1
so has part: feature:5961-6128:-1:exon

WP_235633179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5961-6128:-1:exon

A7X70_RS05460
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05460
old locus tag: A7X70_05405
pseudo: true
so part of: sequence
location: 6662..7536
location: region:6662-7536:1
so has part: feature:6662-7536:1:exon
subclass of: SO_0000010

position:6662:1
position: 6662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7536:1
position: 7536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6662-7536:1:exon

A7X70_RS05460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05460
old locus tag: A7X70_05405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540421.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S2/P23 family protein
SIO_010081: A7X70_RS05460
subclass of: SO_0000673
so part of: A7X70_RS05460
location: 6662..7536
location: region:6662-7536:1
so has part: feature:6662-7536:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6662-7536:1:exon

A7X70_RS07245
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07245
so part of: sequence
location: complement(8086..8208)
location: region:8086-8208:-1
so has part: feature:8086-8208:-1:exon
subclass of: SO_0000010

position:8086:-1
position: 8086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8208:-1
position: 8208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8086-8208:-1:exon

A7X70_RS07245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCEFFKKEKDLIGKIIEKQKNLNVSRDNLKNMHKLVSKSL
SIO_010081: A7X70_RS07245
subclass of: SO_0000673
so part of: A7X70_RS07245
location: complement(8086..8208)
location: region:8086-8208:-1
so has part: feature:8086-8208:-1:exon

WP_012614991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8086-8208:-1:exon

A7X70_RS05465
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05465
old locus tag: A7X70_05410
so part of: sequence
location: 8638..8859
location: region:8638-8859:1
so has part: feature:8638-8859:1:exon
subclass of: SO_0000010

position:8638:1
position: 8638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8859:1
position: 8859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8638-8859:1:exon

A7X70_RS05465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05465
old locus tag: A7X70_05410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIIEGHSFYKVSEAQEILKNKFDYKITKSHLKYKLEVFECYIKIENIMMISEDSLKYLTLSLVLFKTTKNIK
SIO_010081: A7X70_RS05465
subclass of: SO_0000673
so part of: A7X70_RS05465
location: 8638..8859
location: region:8638-8859:1
so has part: feature:8638-8859:1:exon

WP_075552677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8638-8859:1:exon

A7X70_RS05470
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
gene: bptA
locus tag: A7X70_RS05470
old locus tag: A7X70_05415
so part of: sequence
location: complement(9342..9962)
location: region:9342-9962:-1
so has part: feature:9342-9962:-1:exon
subclass of: SO_0000010

position:9342:-1
position: 9342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9962:-1
position: 9962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9962:-1:exon

A7X70_RS05470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
gene: bptA
locus tag: A7X70_RS05470
old locus tag: A7X70_05415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890264.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence-associated protein BptA
translation: MREILFFGLLSICIFLVFFFYKQKENNIIYNRIVEKFEDNVVIDEIYTHLFKDSNLKELVFIKSQLIIPELEHKKMIKATGYRADAYKALSTVYRFDFKVHDNKILGFKSVIFEGFEDAKVSKHENNLPSEKWQQLKDFNIGDPNINEKFFHLEFPFVVKNTLCVTISKGFFKKIKKLKRLKIMLISNEDREYKIDIENFLPKYNL
SIO_010081: A7X70_RS05470
subclass of: SO_0000673
so part of: A7X70_RS05470
location: complement(9342..9962)
location: region:9342-9962:-1
so has part: feature:9342-9962:-1:exon

WP_010259717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9962:-1:exon

A7X70_RS05475
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05475
old locus tag: A7X70_05420
so part of: sequence
location: complement(9975..10481)
location: region:9975-10481:-1
so has part: feature:9975-10481:-1:exon
subclass of: SO_0000010

position:9975:-1
position: 9975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10481:-1
position: 10481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9975-10481:-1:exon

A7X70_RS05475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05475
old locus tag: A7X70_05420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVIILLFFLLISNSFIFSSETSEKVVILNDSNRYDFGLILKLKTQFGSFILRHYHEGYIDLDFEIQIKNSTEIVFKKVYINGVSVIDHPINARSRFIDEVNYFNFEMRFFEHSEKMNKIRKLAEESGIDVYVECFDEINNKKKKYSFKVSRKNSVHFYSAFDMIFHK
SIO_010081: A7X70_RS05475
subclass of: SO_0000673
so part of: A7X70_RS05475
location: complement(9975..10481)
location: region:9975-10481:-1
so has part: feature:9975-10481:-1:exon

WP_075552678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9975-10481:-1:exon

A7X70_RS05480
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05480
old locus tag: A7X70_05425
so part of: sequence
location: complement(11266..11847)
location: region:11266-11847:-1
so has part: feature:11266-11847:-1:exon
subclass of: SO_0000010

position:11266:-1
position: 11266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11847:-1
position: 11847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11266-11847:-1:exon

A7X70_RS05480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05480
old locus tag: A7X70_05425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MSVKLKHMNIKIKDRINTGKNQKQIEINCYEDKMERFLFLKERLIINFQKEIHNKIETMKILKEIKDKEYYKLDGYQNFEMFTRNYKIAKSQAYEYLRIANAIEEGLVQEKYIIENGIQNSLFFLKDKEGEKVKKSNRNFIRPLRFQLKTENAYIYYKSKARFTSFLLEKLLKDKEELLNEIMKEYKECKKYN
SIO_010081: A7X70_RS05480
subclass of: SO_0000673
so part of: A7X70_RS05480
location: complement(11266..11847)
location: region:11266-11847:-1
so has part: feature:11266-11847:-1:exon

WP_075552679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11266-11847:-1:exon

A7X70_RS05485
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05485
old locus tag: A7X70_05430
so part of: sequence
location: complement(11864..12622)
location: region:11864-12622:-1
so has part: feature:11864-12622:-1:exon
subclass of: SO_0000010

position:11864:-1
position: 11864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12622:-1
position: 12622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11864-12622:-1:exon

A7X70_RS05485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05485
old locus tag: A7X70_05430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRENTKIVAICSIKGGVGKSTSAIIFSTLLSKKYKVLLIDADPQASTTSYFSDLLEEQGVDVSKQSIYEVLADKKNINSSTFRLNNNLYILPSYIYLYLFYDDNIPFKETRLKDSLKLLKHKYDYIIIDTSPSLGIILTNVLVVSNYIIIPMTAQKWSVESMQLLEFALKRLKLKIPIFPMVTNFKKNNTYKHLLELISRDDNFLGVIHEREDLNKRIAENDTFDLNKDYIKEYEITLEKFFQLSKKFLIS
SIO_010081: A7X70_RS05485
subclass of: SO_0000673
so part of: A7X70_RS05485
location: complement(11864..12622)
location: region:11864-12622:-1
so has part: feature:11864-12622:-1:exon

WP_075552680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11864-12622:-1:exon

A7X70_RS05490
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05490
old locus tag: A7X70_05435
so part of: sequence
location: complement(12598..13161)
location: region:12598-13161:-1
so has part: feature:12598-13161:-1:exon
subclass of: SO_0000010

position:12598:-1
position: 12598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13161:-1
position: 13161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12598-13161:-1:exon

A7X70_RS05490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05490
old locus tag: A7X70_05435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012622410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKSVLEKLKNKKKEIIKKNRKPEIFIKKEILNERAIYHTKMLMDLYKFEINRYKKNKFLILFRKLFNQGKLEGLNLFSTKENDKFIGIFYGYRKPIKNIVIKYKINGTLKSYTFSKVYYIEFKFKKGSVFCYLRSLARLIKKEKINKKYFQTFIDMLNRLEKKVYEFYCKELPDGGIINKWIEKTLK
SIO_010081: A7X70_RS05490
subclass of: SO_0000673
so part of: A7X70_RS05490
location: complement(12598..13161)
location: region:12598-13161:-1
so has part: feature:12598-13161:-1:exon

WP_075552681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12598-13161:-1:exon

A7X70_RS05495
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05495
old locus tag: A7X70_05440
so part of: sequence
location: complement(13171..14244)
location: region:13171-14244:-1
so has part: feature:13171-14244:-1:exon
subclass of: SO_0000010

position:13171:-1
position: 13171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14244:-1
position: 14244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13171-14244:-1:exon

A7X70_RS05495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05495
old locus tag: A7X70_05440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024063.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKVNKSLQIQSKYQHKLIALIATLEYINKNKKKYNQSDVLYCFNSNLRRNGQKEVSIKTLRNYFYKLKKLNITINYYRHLGINMGTEIYYALRHSKKDCYNLLNQHFRNKKTERFQRRVNAYIKINYDKKDNVKNGECLNNKYKKEERETERKKRINKLKLKKYAKKCNFDNEISSFIINLNLKKETTIKLFKFIIKEKYYLKKENKFNLQKTLQNKKRDLISILRKTQKILIKEGCDKKKIKTQIQNTYQKYKNKPHFILESNKYKDFDQIIKKIKDDTNKTESQKHKDNIKTNIYNILLDQLHKKTNTINLRSKIKEYLNKQNKLEYKKVFNNQYYNEIIKLIESQNIYKNSYIN
SIO_010081: A7X70_RS05495
subclass of: SO_0000673
so part of: A7X70_RS05495
location: complement(13171..14244)
location: region:13171-14244:-1
so has part: feature:13171-14244:-1:exon

WP_075552682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13171-14244:-1:exon

A7X70_RS05500
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05500
old locus tag: A7X70_05445
so part of: sequence
location: complement(14810..15388)
location: region:14810-15388:-1
so has part: feature:14810-15388:-1:exon
subclass of: SO_0000010

position:14810:-1
position: 14810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15388:-1
position: 15388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14810-15388:-1:exon

A7X70_RS05500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05500
old locus tag: A7X70_05445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isochorismatase family protein
translation: MLIDIQNDFLESGALPVSNSNEIISLINQLQNYFKNIIATKDWHCKNHVSFSNNKNGGIWPEHCVKNTWGSEFPNDLNTKRIKKVFFKGTDQYYDSYSGFYDDCIKKKQTGLQLYLKNNSINTLFITGLALDFCVKETILDAINLGFRVYLITDATRSITSTPELIIQELKKLNVLTCFSKDIFDSQSKLNI
SIO_010081: A7X70_RS05500
subclass of: SO_0000673
so part of: A7X70_RS05500
location: complement(14810..15388)
location: region:14810-15388:-1
so has part: feature:14810-15388:-1:exon

WP_075552683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14810-15388:-1:exon

A7X70_RS06995
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06995
pseudo: true
so part of: sequence
location: <16306..16488
location: region:16306-16488:1
so has part: feature:16306-16488:1:exon
subclass of: SO_0000010

position:16306:1
position: 16306
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16488:1
position: 16488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16306-16488:1:exon

A7X70_RS06995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: A7X70_RS06995
subclass of: SO_0000673
so part of: A7X70_RS06995
location: <16306..16488
location: region:16306-16488:1
so has part: feature:16306-16488:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16306-16488:1:exon

A7X70_RS07000
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07000
so part of: sequence
location: 16680..17021
location: region:16680-17021:1
so has part: feature:16680-17021:1:exon
subclass of: SO_0000010

position:16680:1
position: 16680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17021:1
position: 17021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16680-17021:1:exon

A7X70_RS07000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07000
inference: COORDINATES: protein motif:HMM:NF033725.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKILKEIKDKEYYKLDGYQNFEMFTRNYKIAKSQTYEYLRIANAIEEGLAWEKDIIENSIQNSLFFLKDKEGVKIKKFNRNFIRPLRFQLKTENAYIYYKSKAIYYFFVRKIT
SIO_010081: A7X70_RS07000
subclass of: SO_0000673
so part of: A7X70_RS07000
location: 16680..17021
location: region:16680-17021:1
so has part: feature:16680-17021:1:exon

WP_235633180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16680-17021:1:exon

A7X70_RS07005
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07005
pseudo: true
so part of: sequence
location: <17313..17441
location: region:17313-17441:1
so has part: feature:17313-17441:1:exon
subclass of: SO_0000010

position:17313:1
position: 17313
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17441:1
position: 17441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17313-17441:1:exon

A7X70_RS07005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703849.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: A7X70_RS07005
subclass of: SO_0000673
so part of: A7X70_RS07005
location: <17313..17441
location: region:17313-17441:1
so has part: feature:17313-17441:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17313-17441:1:exon

A7X70_RS06835
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06835
so part of: sequence
location: 20287..20430
location: region:20287-20430:1
so has part: feature:20287-20430:1:exon
subclass of: SO_0000010

position:20287:1
position: 20287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20430:1
position: 20430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20287-20430:1:exon

A7X70_RS06835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFDFVIGIGTFLPEVIKIILNEIPIDSEKQEDYVNFHILKNVMVLNV
SIO_010081: A7X70_RS06835
subclass of: SO_0000673
so part of: A7X70_RS06835
location: 20287..20430
location: region:20287-20430:1
so has part: feature:20287-20430:1:exon

WP_012665721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20287-20430:1:exon

A7X70_RS06840
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS06840
so part of: sequence
location: 20706..20873
location: region:20706-20873:1
so has part: feature:20706-20873:1:exon
subclass of: SO_0000010

position:20706:1
position: 20706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20873:1
position: 20873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20706-20873:1:exon

A7X70_RS06840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS06840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLVNDYKKIENKFINEKNLRPLNDDRTKFIRFAEHRIKSSNEGLLGIITNKWIP
SIO_010081: A7X70_RS06840
subclass of: SO_0000673
so part of: A7X70_RS06840
location: 20706..20873
location: region:20706-20873:1
so has part: feature:20706-20873:1:exon

WP_158512879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20706-20873:1:exon

A7X70_RS07010
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS07010
so part of: sequence
location: 21914..22060
location: region:21914-22060:1
so has part: feature:21914-22060:1:exon
subclass of: SO_0000010

position:21914:1
position: 21914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22060:1
position: 22060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21914-22060:1:exon

A7X70_RS07010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS07010
inference: COORDINATES: protein motif:HMM:NF013808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition family protein
translation: MPELNNRKMSIGILMKNKGFYEFCKEDTKRAYFIFEILFFIKKRSLII
SIO_010081: A7X70_RS07010
subclass of: SO_0000673
so part of: A7X70_RS07010
location: 21914..22060
location: region:21914-22060:1
so has part: feature:21914-22060:1:exon

WP_235633181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21914-22060:1:exon

A7X70_RS05530
type: Gene
subclass of: SO_0000704
RO_0002162: 1674146
locus tag: A7X70_RS05530
old locus tag: A7X70_05455
so part of: sequence
location: complement(22302..23033)
location: region:22302-23033:-1
so has part: feature:22302-23033:-1:exon
subclass of: SO_0000010

position:22302:-1
position: 22302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23033:-1
position: 23033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22302-23033:-1:exon

A7X70_RS05530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1674146
locus tag: A7X70_RS05530
old locus tag: A7X70_05455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYHIIVSIFIFLFFNACNPDSNTNQNNSKKGLLKIEKIPNKQIKNKLLDDLKNLIETANEDRKKYEKKLEEEPSNQYGISIFKEIYWVASYETVADNTDRSKNYRKFTYATLNPINTNKLANLSKILIQSKQKTLLFGTFCNLGRTFDTAINHLYPKKDALDKLEISNLEKLKNSFEKLLSMKSIVSDMLNQLLLDYQDDKDSIKTDIAKLESHLTELYKQIEKKSSQSTKLKNNILSISNL
SIO_010081: A7X70_RS05530
subclass of: SO_0000673
so part of: A7X70_RS05530
location: complement(22302..23033)
location: region:22302-23033:-1
so has part: feature:22302-23033:-1:exon

WP_075552685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22302-23033:-1:exon