Borreliella mayonii strain MN14-1539 plasmid cp32-1, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
Submitted (18-MAY-2016) Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, 3156 Rampart Rd., Fort Collins, CO 80521, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015798.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP, SMRTAnalysis v. 2.3.0\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,302\nCDSs (total) :: 1,262\nGenes (coding) :: 1,178\nCDSs (with protein) :: 1,178\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 51 of 84\nPseudo Genes (incomplete) :: 34 of 84\nPseudo Genes (internal stop) :: 29 of 84\nPseudo Genes (multiple problems) :: 24 of 84\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012621337.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014540092.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014540879.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540034.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658726.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017447.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540018.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540912.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017452.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257815.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257818.1
COORDINATES: similar to AA sequence:RefSeq:WP_012621256.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256325.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540064.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486178.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658697.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658481.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014486154.1
COORDINATES: similar to AA sequence:RefSeq:WP_010259076.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883878.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017689.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258286.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017560.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883735.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883736.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_014540044.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012621480.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883923.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017723.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010259002.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883835.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258949.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012599357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
PBSX family phage terminase large subunit