Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600 plasmid P, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Submitted (17-OCT-2017) University of Brest, UMR 6539 LEMAR CNRS/UBO/IRD/Ifremer, Technopole Brest Iroise, 29280 PLOUZANE, France
REFSEQ INFORMATION: The reference sequence is identical to\nLT960613.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:51:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,145\nCDSs (total) :: 5,045\nGenes (coding) :: 4,876\nCDSs (with protein) :: 4,876\nGenes (RNA) :: 100\nrRNAs :: 7, 5, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 5, 6 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 169\nCDSs (without protein) :: 169\nPseudo Genes (ambiguous residues) :: 0 of 169\nPseudo Genes (frameshifted) :: 80 of 169\nPseudo Genes (incomplete) :: 73 of 169\nPseudo Genes (internal stop) :: 38 of 169\nPseudo Genes (multiple problems) :: 20 of 169\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005592837.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000465031.1
GO:0006260 - DNA replication [Evidence IEA]
phage/plasmid replication protein, II/X family
COORDINATES: similar to AA sequence:RefSeq:WP_000590113.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005592841.1
COORDINATES: similar to AA sequence:RefSeq:WP_017789131.1
COORDINATES: similar to AA sequence:RefSeq:WP_017188064.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800088.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_017817632.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_016800090.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_017106247.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_017191043.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787044.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_017096872.1
COORDINATES: similar to AA sequence:RefSeq:WP_017053049.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011148986.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_017103572.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_017053041.1
COORDINATES: similar to AA sequence:RefSeq:WP_017087946.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004744665.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_008219445.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_017188049.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800101.1
COORDINATES: similar to AA sequence:RefSeq:WP_017053063.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_008219452.1
COORDINATES: similar to AA sequence:RefSeq:WP_017791690.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191384.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191383.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191382.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_017818161.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191095.1
COORDINATES: similar to AA sequence:RefSeq:WP_017096751.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085511.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_005593006.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017085512.1
COORDINATES: similar to AA sequence:RefSeq:WP_017060513.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017191370.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098486.1
COORDINATES: similar to AA sequence:RefSeq:WP_017060516.1
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012600340.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000071008.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005377021.1
COORDINATES: similar to AA sequence:RefSeq:WP_001907982.1
COORDINATES: similar to AA sequence:RefSeq:WP_016797328.1
COORDINATES: similar to AA sequence:RefSeq:WP_019281827.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008218079.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840016.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017005155.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011711501.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_000465704.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191113.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191081.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744720.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191252.1
COORDINATES: similar to AA sequence:RefSeq:WP_020195171.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191282.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011176793.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020196148.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020196147.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011840015.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016800242.1
COORDINATES: similar to AA sequence:RefSeq:WP_008216480.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098124.1
COORDINATES: similar to AA sequence:RefSeq:WP_019826174.1
COORDINATES: similar to AA sequence:RefSeq:WP_017104692.1
COORDINATES: similar to AA sequence:RefSeq:WP_011787804.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006714556.1