Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
Genome sequence of Bacillus glycinifermentans SRCM103574
Submitted (16-JAN-2019) Research Institute, ChunLab, 6F, JW TOWER, 2477, Nambusunhwan-ro, Seocho-gu, Seoul 06725, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP035233.1.\nBacteria and source DNA available from Microbial Institute for\nFermentation Industry, 61-27 Minsongmaeul-gil, Sunchang-eup,\nSunchang-gun, Jeollabuk-do, Republic of Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2018\nAssembly Method :: HGAP v. 2.3.0; PILON v. 1.22\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 109.93x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/04/2023 03:06:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,050\nCDSs (total) :: 4,938\nGenes (coding) :: 4,761\nCDSs (with protein) :: 4,761\nGenes (RNA) :: 112\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 5\nPseudo Genes (total) :: 177\nCDSs (without protein) :: 177\nPseudo Genes (ambiguous residues) :: 0 of 177\nPseudo Genes (frameshifted) :: 107 of 177\nPseudo Genes (incomplete) :: 64 of 177\nPseudo Genes (internal stop) :: 31 of 177\nPseudo Genes (multiple problems) :: 21 of 177\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012291708.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF022432.2
COORDINATES: similar to AA sequence:RefSeq:WP_017695575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014471336.1
COORDINATES: protein motif:HMM:NF024554.2
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017358766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017358761.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_002350163.1
COORDINATES: protein motif:HMM:NF036438.2
COORDINATES: similar to AA sequence:RefSeq:WP_017359020.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014125412.1
COORDINATES: similar to AA sequence:RefSeq:WP_010760153.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_017358473.1
COORDINATES: protein motif:HMM:NF037351.2
toxin Cry1Ac domain D-VI-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_017358897.1
COORDINATES: similar to AA sequence:RefSeq:WP_003179978.1
COORDINATES: similar to AA sequence:RefSeq:WP_017474126.1
COORDINATES: similar to AA sequence:RefSeq:WP_000595464.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009328354.1