Campylobacter vulpis strain 251/13 plasmid pVULP, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Campylobacter vulpis sp. nov. isolated from wild red foxes
Submitted (08-JUL-2019) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP041618.1.\nBacteria and source DNA available from Bacteria available from the\nLMG culture collection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 774x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/16/2022 02:36:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,750\nCDSs (total) :: 1,694\nGenes (coding) :: 1,668\nCDSs (with protein) :: 1,668\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 11 of 26\nPseudo Genes (incomplete) :: 15 of 26\nPseudo Genes (internal stop) :: 3 of 26\nPseudo Genes (multiple problems) :: 3 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006803286.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002839417.1
COORDINATES: similar to AA sequence:RefSeq:WP_002864936.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002839419.1
COORDINATES: similar to AA sequence:RefSeq:WP_002864057.1
COORDINATES: similar to AA sequence:RefSeq:WP_002826066.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823310.1
COORDINATES: similar to AA sequence:RefSeq:WP_006803293.1
COORDINATES: similar to AA sequence:RefSeq:WP_002818418.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002779783.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002835057.1
COORDINATES: similar to AA sequence:RefSeq:WP_004276291.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002828964.1
COORDINATES: similar to AA sequence:RefSeq:WP_002788503.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_006803301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014517320.1
COORDINATES: similar to AA sequence:RefSeq:WP_002801292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006803304.1
COORDINATES: similar to AA sequence:RefSeq:WP_002864048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006803307.1
COORDINATES: similar to AA sequence:RefSeq:WP_002779633.1
COORDINATES: similar to AA sequence:RefSeq:WP_002809287.1
COORDINATES: similar to AA sequence:RefSeq:WP_002834097.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_002826433.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804391.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002957409.1
COORDINATES: similar to AA sequence:RefSeq:WP_002822838.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002809113.1
cag pathogenicity island Cag12 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002809111.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_002779641.1
COORDINATES: similar to AA sequence:RefSeq:WP_002801287.1
COORDINATES: similar to AA sequence:RefSeq:WP_006803319.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF021182.2
COORDINATES: similar to AA sequence:RefSeq:WP_002782407.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804244.1