Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium crudilactis, a new Corynebacterium species isolated from raw cow's milk
Submitted (11-MAY-2016) CeBiTec, Bielefeld University, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP015624.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 143.9x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 04:25:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,965\nCDSs (total) :: 2,885\nGenes (coding) :: 2,849\nCDSs (with protein) :: 2,849\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 16 of 36\nPseudo Genes (incomplete) :: 19 of 36\nPseudo Genes (internal stop) :: 8 of 36\nPseudo Genes (multiple problems) :: 6 of 36\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium crudilactis
COORDINATES: similar to AA sequence:RefSeq:WP_013222281.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS6-like element ISCef5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003854479.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015582334.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013169749.1
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001138082.1
COORDINATES: similar to AA sequence:RefSeq:WP_000904895.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element IS1133 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: similar to AA sequence:RefSeq:WP_007321870.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770466.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770465.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006770473.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011015202.1
IS1380-like element IS1677 family transposase