Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence.
type: Entry
definition: Corynebacterium crudilactis strain JZ16 plasmid pCRULAC2, complete sequence.
sequence version: NZ_CP015624.1
sequence date: 2023-05-03
sequence: sequence
division: CON
label: NZ_CP015624.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04990137
keyword: RefSeq
source: Corynebacterium crudilactis
organism: Corynebacterium crudilactis
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015624.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 143.9x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 04:25:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,965\nCDSs (total) :: 2,885\nGenes (coding) :: 2,849\nCDSs (with protein) :: 2,849\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 16 of 36\nPseudo Genes (incomplete) :: 19 of 36\nPseudo Genes (internal stop) :: 8 of 36\nPseudo Genes (multiple problems) :: 6 of 36\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 25275
topology: circular
so has quality: SO_0000988
location: 1..25275
location: region:1-25275:1
RO_0002162: 1652495

NZ_CP015624
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04990137
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Corynebacterium crudilactis, a new Corynebacterium species isolated from raw cow's milk
author: Christian, R.
author: Zimmermann, J.
author: Lipski, A.
author: Kalinowski, J.
journal: Unpublished

2
title: Direct Submission
author: Christian, R.
author: Zimmermann, J.
author: Lipski, A.
author: Kalinowski, J.
journal: Submitted (11-MAY-2016) CeBiTec, Bielefeld University, Sequenz 1, Bielefeld 33615, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:25275:1
position: 25275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25275:1:source
so part of: sequence
organism: Corynebacterium crudilactis
mol type: genomic DNA
strain: JZ16
isolation source: raw cow milk
culture collection: DSM:100882
type material: type strain of Corynebacterium crudilactis
plasmid: pCRULAC2
country: Germany
collection date: 2015
identified by: Julia Zimmermann

1652495
type: Taxonomy
SIO_000068: taxonomy

ccrud_RS14675
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14675
old locus tag: ccrud_14670
pseudo: true
so part of: sequence
location: join(<25272..25275,1..377)
location: region:1-25275:1
so has part: feature:25272-25275:1:exon
so has part: feature:1-377:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:25272-25275:1:exon

position:25272:1
position: 25272
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-377:1:exon

position:377:1
position: 377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccrud_RS14675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14675
old locus tag: ccrud_14670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013222281.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS630 family transposase
SIO_010081: ccrud_RS14675
subclass of: SO_0000673
so part of: ccrud_RS14675
location: join(<25272..25275,1..377)
location: region:1-25275:1
so has part: feature:25272-25275:1:exon
so has part: feature:1-377:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25272-25275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-377:1:exon

ccrud_RS14685
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14685
old locus tag: ccrud_14680
so part of: sequence
location: 910..1620
location: region:910-1620:1
so has part: feature:910-1620:1:exon
subclass of: SO_0000010

position:910:1
position: 910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1620:1
position: 1620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:910-1620:1:exon

ccrud_RS14685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14685
old locus tag: ccrud_14680
function: transposase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element ISCef5 family transposase
translation: MGIFSGRHFPREIILWAVRWYCRYGVSYRDLEEMMTERGVPVDHSTIYRWVQKYAPELDKQTRWYRQVPDWQARSWRVDETYIRVGGKWCYLYRAITAGGHTLDFYLSPKRNVAAAKRFLAKTLRSNTITGSPRVINTDKAPSLARAIAELKSEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGAFKNRTSAYRTLKGMEAMHSLRKGQGTMFAYGHPNPDAVIVSRVFEAA
SIO_010081: ccrud_RS14685
subclass of: SO_0000673
so part of: ccrud_RS14685
location: 910..1620
location: region:910-1620:1
so has part: feature:910-1620:1:exon

WP_010991832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:910-1620:1:exon

ccrud_RS15280
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS15280
old locus tag: ccrud_14685
so part of: sequence
location: complement(1749..2780)
location: region:1749-2780:-1
so has part: feature:1749-2780:-1:exon
subclass of: SO_0000010

position:1749:-1
position: 1749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2780:-1
position: 2780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1749-2780:-1:exon

ccrud_RS15280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS15280
old locus tag: ccrud_14685
function: resolvase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003854479.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRYGTLLGLHGKPKDRVIIVRRGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRMPNTATWRSFGGEPQGHLHVQRVYKNVIKASIYEGNGQWSRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPASEETTTPTPKTTDLGQRVGYVRVSSADQNLARQREAIGAVDREFVDELSARARAQRPGLEECIAYLRNHDELVVASIDRLARSLVDLRTIIDQITAKGASVRFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKYSGRKKALSPAQVKQARDRIDAGESKTAVAQDLGVGRATLYRYLMSDNKR
SIO_010081: ccrud_RS15280
subclass of: SO_0000673
so part of: ccrud_RS15280
location: complement(1749..2780)
location: region:1749-2780:-1
so has part: feature:1749-2780:-1:exon

WP_010991831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1749-2780:-1:exon

ccrud_RS14695
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14695
old locus tag: ccrud_14690
so part of: sequence
location: 3000..3653
location: region:3000-3653:1
so has part: feature:3000-3653:1:exon
subclass of: SO_0000010

position:3000:1
position: 3000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3653:1
position: 3653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3000-3653:1:exon

ccrud_RS14695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14695
old locus tag: ccrud_14690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015582334.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-layer homology domain-containing protein
translation: MNLHEMERLVKSKQRVADHGEVFTPSWMVEDMLNLLQNESQRIDSRVLEPACGSGNFLVPVLARKFSTVQDRHGKSDFEKRNFALFALMCTYGIELLADNTQECRSNLAELFNTFLDIDENDEWAKAARVVLAANIIQGDGLTMTEPNGLPITFAEWGYLGKGKFQRRDFQYNNLTARTTWEAEGSLFQDLAHDLFAPSRTYPTMTAQEIAKQVLSK
SIO_010081: ccrud_RS14695
subclass of: SO_0000673
so part of: ccrud_RS14695
location: 3000..3653
location: region:3000-3653:1
so has part: feature:3000-3653:1:exon

WP_099092720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3000-3653:1:exon

ccrud_RS14700
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14700
old locus tag: ccrud_14695
so part of: sequence
location: 3746..5278
location: region:3746-5278:1
so has part: feature:3746-5278:1:exon
subclass of: SO_0000010

position:3746:1
position: 3746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5278:1
position: 5278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3746-5278:1:exon

ccrud_RS14700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14700
old locus tag: ccrud_14695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013169749.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Eco57I restriction-modification methylase domain-containing protein
translation: MANAMLDLLAAAWADTHEGADIWANPNVSFLDPFTKSGVFLREITRRLTDGLALAIPDLTERVDHILTRQVYGIGITQLTALLARRSVYCSKYANGPHSIAQSFTTEDGNIWFERTEHTWAGGTREIHSNPRTGAKTVVYTRRKCRYCSANEDDYGRGDELETHAYAFIHTDDIKTRITELFGENMHFDVIIGNPPYQLSDGGHGSSAAPIYQMFVEKALSLDPRFAVFVTPSRWFAGGKGLDEYRKKMLSDHRMRNIVDYPKLYEAFPGVKIRGGVSYFLWDRDYNGPCTMQTMWDGEPVGEPVARYLDAYDVLVRRNEAVPILEKVRSKQEATLDGRVSSRKPFGLPTNFKGKTSPARIVDPVKLFANQRIDWIDRSELLANDAWVDDWKVLMTRVQGTSAAVETKFLSKPILAGPGTACTETYLVAGRFATEQEANRYAMYLRTRFVRFLVSLRKSTQDAPRHVYTFVPDVPLDRDWTDALLYERYGGRLREGAESYAKALASDILR
SIO_010081: ccrud_RS14700
subclass of: SO_0000673
so part of: ccrud_RS14700
location: 3746..5278
location: region:3746-5278:1
so has part: feature:3746-5278:1:exon

WP_245670424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3746-5278:1:exon

ccrud_RS14705
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14705
old locus tag: ccrud_14700
so part of: sequence
location: complement(5247..8132)
location: region:5247-8132:-1
so has part: feature:5247-8132:-1:exon
subclass of: SO_0000010

position:5247:-1
position: 5247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8132:-1
position: 8132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5247-8132:-1:exon

ccrud_RS14705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14705
old locus tag: ccrud_14700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001138082.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRVTLTDRQKDALLRLPTSQTDLLKHYTLSDEDLGHIRLRRRAHNRFGFALQLCVLRYPGRVLAPGELIPAEVIEFIGAQLGLGADDLVDYAAREETRHEHLAELRGLYGFRTFSGRGASELKEWLFREAEMAVSNEDIARRFVAECRRTRTVLPATSTIERLCAAALVDAERRIETRIASRLPMSIREQLLALLEETADDRVTRFVWLRQFEPGSNSSSANRLLDRLEYLQRIDLPEDLLAGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCVSEWQAMLADAVVETHDRIVGRLYRASERICHAKVADEAGVVRDTLKSFAEIGGALVDAQDDGQPLGDVIASGSGWDGLKTLVAMATRLTATMADDPLNHVLDGYHRFRRYAPRMLRLLDLRAAPVALPLLEAVTALRTGLNDAAMTSFLRPSSKWHRHLRAQRAGDARLWEIAVLFHLRDAFRSGDVWLTRSRRYGDLKHALVPAQSIAEGGRLAVPLRPEEWLADRQARLDMRLRELGRAARAGTIPGGSIENGVLHIEKLEAAAPTGAEDLVLDLYKQIPPTRITDLLLEVDAATGFTEAFTHLRTGAPCADRIGLMNVILAEGINLGLRKMADATNTHTFWELIRIGRWHVEGEAYDRALAMVVEAQAALPMARFWGMGTSASSDGQFFVATEQGEAMNLVNAKYGNTPGLKAYSHVSDQYAPFATQVIPATASEAPYILDGLLMNDAGRHIREQFTDTGGFTDHVFAACAILGYRFAPRIRDLPSKRLYAFNPSAAPAHLRALIGGKVNQAMIERNWPDILRIAATIAAGTVAPSQILRKLASYPRQNELATALREVGRVERTLFMIDWILDAELQRRAQIGLNKGEAHHALKRAISFHRRGEIRDRSAEGQHYRIAGMNLLAAIIIFWNTMKLGEVVANQKRDGKLLSPDLLAHVSPLGWEHINLTGEYRWPKP
SIO_010081: ccrud_RS14705
subclass of: SO_0000673
so part of: ccrud_RS14705
location: complement(5247..8132)
location: region:5247-8132:-1
so has part: feature:5247-8132:-1:exon

WP_001138082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5247-8132:-1:exon

ccrud_RS14710
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14710
old locus tag: ccrud_14705
so part of: sequence
location: 8258..8872
location: region:8258-8872:1
so has part: feature:8258-8872:1:exon
subclass of: SO_0000010

position:8258:1
position: 8258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8872:1
position: 8872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8258-8872:1:exon

ccrud_RS14710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14710
old locus tag: ccrud_14705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000904895.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYARVSKADGSQSLDLQHDALRAAGVERDNIYDDLASGGRDDRPGLTACLKSLRDGDVLVVWKLDRLGRSLAHLVNTVKELSDRKIGLRVLTGKGAQIDTTTASGRMVFGIFATLAEFERDLIRERTMAGLASARARGRKGGRKFALTKAQVRLAQAAMAQRDTSVSDLCKELGIERVTLYRYVGPKGELRDHGKHVLGLT
SIO_010081: ccrud_RS14710
subclass of: SO_0000673
so part of: ccrud_RS14710
location: 8258..8872
location: region:8258-8872:1
so has part: feature:8258-8872:1:exon

WP_000904906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8258-8872:1:exon

ccrud_RS14720
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14720
old locus tag: ccrud_14715
so part of: sequence
location: 8937..10066
location: region:8937-10066:1
so has part: feature:8937-10066:1:exon
subclass of: SO_0000010

position:8937:1
position: 8937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10066:1
position: 10066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8937-10066:1:exon

ccrud_RS14720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14720
old locus tag: ccrud_14715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3-like element IS1133 family transposase
translation: MSLKHSDEFKRDAVRIALTSGLTRRQVASDLSIGLSTLGKWIASISDETKIPTQDTDLLRENERLRKENRILREEREILKKAGNIFRSTKAVRFQFITDYRGSLSRSRICRLMGVTDRGLRAWKRRPPSLRQRRDLILLAHIREQHRLCLGSYGRPRMTEELKALGLQVGQRRVGRLMRQNNITVVRTRKFKRTTDSHHTFNIAPNLLKQDFSASAPNQKWAGDITYVWTREGWVYLAVILDLYSRRVIGWATGDRLKQDLALRALNMALALRKPPPGCIQHTDRGSQYCAHEYQKLLLKHQLLPSMSGKGNCFDNSAVESFFKSLKAELIWRRHWQTRRDIEIAIFEYINGFYNPRRRHSTLGWKSPVAFEKKAA
SIO_010081: ccrud_RS14720
subclass of: SO_0000673
so part of: ccrud_RS14720
location: join(8937..9183,9183..10066)
location: region:8937-10066:1
so has part: feature:8937-9183:1:exon
so has part: feature:9183-10066:1:exon

WP_085959879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8937-9183:1:exon

position:9183:1
position: 9183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9183-10066:1:exon

ccrud_RS14725
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
gene: aph(3'')-Ib
locus tag: ccrud_RS14725
old locus tag: ccrud_14720
so part of: sequence
location: 10173..10976
location: region:10173-10976:1
so has part: feature:10173-10976:1:exon
subclass of: SO_0000010

position:10173:1
position: 10173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10976:1
position: 10976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10173-10976:1:exon

ccrud_RS14725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
gene: aph(3'')-Ib
locus tag: ccrud_RS14725
old locus tag: ccrud_14720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(3'')-Ib
translation: MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
SIO_010081: ccrud_RS14725
subclass of: SO_0000673
so part of: ccrud_RS14725
location: 10173..10976
location: region:10173-10976:1
so has part: feature:10173-10976:1:exon

WP_001082319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10173-10976:1:exon

ccrud_RS14730
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14730
old locus tag: ccrud_14725
so part of: sequence
location: 10976..11812
location: region:10976-11812:1
so has part: feature:10976-11812:1:exon
subclass of: SO_0000010

position:11812:1
position: 11812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10976-11812:1:exon

ccrud_RS14730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14730
old locus tag: ccrud_14725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(6)-Id
translation: MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
SIO_010081: ccrud_RS14730
subclass of: SO_0000673
so part of: ccrud_RS14730
location: 10976..11812
location: region:10976-11812:1
so has part: feature:10976-11812:1:exon

WP_000480968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10976-11812:1:exon

ccrud_RS14735
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14735
old locus tag: ccrud_14730
so part of: sequence
location: 12011..14569
location: region:12011-14569:1
so has part: feature:12011-14569:1:exon
subclass of: SO_0000010

position:12011:1
position: 12011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14569:1
position: 14569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12011-14569:1:exon

ccrud_RS14735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14735
old locus tag: ccrud_14730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007321870.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MSKEIDELLPAKPSARLRIYAWTPNDPPVDYVGLIKIGQTTKSDVNERIRESQGQMQQTYTLHIDEPAERDDGTLFRDSDVRQRLIAKGFENPIFGSAREWMRCTPDDVRTAITELHTGTKLTGTHHETFTMRPEQAQAVEKTRQYYESIWAEDPQTVPRFLWNAKMRFGKTFASYQLAKRMNASRILVVTFKPAVEDAWQTDLESHSDFEGWQYISSSTGGDPDAADRSRPLVYFGSFQDLLGRNKKTGMIKPKNEWVHTTNWDLVIFDEYHFGAWRESAKELFEGEDEKVAKKEIAAEYHEDLAAFEEELDELGNSENDFLPITTRSYLYLSGTPFKALSTGEFIEEQIFNWTYTDEQRAKADYATTHPGKWNPYGALPEMRLFTYQMPDELIAVANQGEFDEFDLNAFFEATGTGKDATFKRKTDVQKWLDIIRGAYMPTQVDAMRMGTRPPFPYSDSRLLPYLQHSFWFLPTVASCEAMANLLAERQNIFWHDYQVLSVAGSHAGIGLEALPPVRAAIREGHDTKSITLSCGKLTTGVTVKQWSSILMLRNLNSPETYFQAAFRVQSPWSIKNPNGDNPNEEEVIKPACFVFDFAPTRALRQISDYGVGLSPEAQNPEHAVEELVKFLPVLAYDGSNMTQVNAGGILDIAMAGTSATLLARKWESAILVNVDNDTLRRIMGSQEAMDAVMNIEGFRALGSAVFETVINKSESVKATKKEKGESLTVKEKKELSTEEKEYKSKRKQIQEKLIKFATRIPAFMYLTDFREHTLQDVITKLEPDLFKAVTGLSVADFHLLVELGVFNATHMNQAVFAFRRYEDSSLSYTGIASHKGLRHYGLYDTVIAVEE
SIO_010081: ccrud_RS14735
subclass of: SO_0000673
so part of: ccrud_RS14735
location: 12011..14569
location: region:12011-14569:1
so has part: feature:12011-14569:1:exon

WP_066570511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12011-14569:1:exon

ccrud_RS14740
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14740
old locus tag: ccrud_14735
pseudo: true
so part of: sequence
location: complement(14817..15578)
location: region:14817-15578:-1
so has part: feature:14817-15578:-1:exon
subclass of: SO_0000010

position:14817:-1
position: 14817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15578:-1
position: 15578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14817-15578:-1:exon

ccrud_RS14740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14740
old locus tag: ccrud_14735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: ccrud_RS14740
subclass of: SO_0000673
so part of: ccrud_RS14740
location: complement(14817..15578)
location: region:14817-15578:-1
so has part: feature:14817-15578:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14817-15578:-1:exon

ccrud_RS14745
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14745
old locus tag: ccrud_14740
so part of: sequence
location: complement(15814..17262)
location: region:15814-17262:-1
so has part: feature:15814-17262:-1:exon
subclass of: SO_0000010

position:15814:-1
position: 15814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17262:-1
position: 17262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15814-17262:-1:exon

ccrud_RS14745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14745
old locus tag: ccrud_14740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSLPNDYAAGTTRHAEVPSFTGDLDDTPAGYTDRDALLSHLGRQVLHGSRGRDFASAYITTKDGTRAPRMYRVDSDALEKCEYVQLTNKQYASVLVVDIDLPGTAGGHPVNLNDEVKEKFSQLISRHLGPAWVGINPVNGKCQALWLIDPIYADVGGQSPHMALLAAATHTLGQWLGHDSHFAHRFSRSPFYTGDSPTAYRWYRQNHAVRRVGDLLKDLRTMTGQEQYSKPRQQFSSGRELINAVKSRREEAQRFKALSEGVEAELAGELDQYDPELTQGVRVLWIRAGRAARDETAFRHALKTGYRLRQSGQRLTDAAIIDAYERAYGVAQEVGADGRKAELPPMRDRQTMARRVRGYVTTSKSEVHGGSSVSGQVTSSERKALATMGRRGGKKAAERWKDPNSDYATELRTKLQGANERRALTGRVTARQIANFFDDTFIQTGEYPSIPQAMNELGVSRPTISRALKTAGIQLPRGRKKK
SIO_010081: ccrud_RS14745
subclass of: SO_0000673
so part of: ccrud_RS14745
location: complement(15814..17262)
location: region:15814-17262:-1
so has part: feature:15814-17262:-1:exon

WP_010889960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15814-17262:-1:exon

ccrud_RS14750
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14750
old locus tag: ccrud_14745
so part of: sequence
location: complement(17660..17881)
location: region:17660-17881:-1
so has part: feature:17660-17881:-1:exon
subclass of: SO_0000010

position:17660:-1
position: 17660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17881:-1
position: 17881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17660-17881:-1:exon

ccrud_RS14750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14750
old locus tag: ccrud_14745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIKKASDFLSTQKTSDSRSMKEAFVRGETKAFTLRMDSDLHYRLKLRALEEGRTMTDILDELARGYLDGKKS
SIO_010081: ccrud_RS14750
subclass of: SO_0000673
so part of: ccrud_RS14750
location: complement(17660..17881)
location: region:17660-17881:-1
so has part: feature:17660-17881:-1:exon

WP_010889974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17660-17881:-1:exon

ccrud_RS14755
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14755
old locus tag: ccrud_14750
so part of: sequence
location: complement(17881..18459)
location: region:17881-18459:-1
so has part: feature:17881-18459:-1:exon
subclass of: SO_0000010

position:18459:-1
position: 18459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17881-18459:-1:exon

ccrud_RS14755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14755
old locus tag: ccrud_14750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770465.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIIGIINSKGGVGKTTTTINLATVFANQGKDVAVLDLDPQGSASDWADRAADAGTPLPFLVEATNIKRLPRVAGIHEFTIIDTPPGDPAIMDATIAVSDFVIVPVQSSPIELVRVGETLPSLTNTPHGVLITSARFGTRQLEETVEGLEEQGISTFDTKIPIREGIRSAFGTVPTKFEGYDFLAQEIMEAMS
SIO_010081: ccrud_RS14755
subclass of: SO_0000673
so part of: ccrud_RS14755
location: complement(17881..18459)
location: region:17881-18459:-1
so has part: feature:17881-18459:-1:exon

WP_010889961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17881-18459:-1:exon

ccrud_RS14760
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
gene: mobF
locus tag: ccrud_RS14760
old locus tag: ccrud_14755
so part of: sequence
location: complement(18705..22199)
location: region:18705-22199:-1
so has part: feature:18705-22199:-1:exon
subclass of: SO_0000010

position:18705:-1
position: 18705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22199:-1
position: 22199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18705-22199:-1:exon

ccrud_RS14760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
gene: mobF
locus tag: ccrud_RS14760
old locus tag: ccrud_14755
inference: COORDINATES: protein motif:HMM:NF041492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MLTIAKMHGDSVAYYESTVATFDDRISSPDDYYSEDGTQPATAWIQARTEAQATTVATALGVKNGVQVDGADVGQWFNHALAPSGHKLGRAPKSSGVPGFDLTFCAPKSVSLIWGLTNDMDVRSTVDLAHHRAVTTALSYLSEHAGYTRRADDHDRSMMIIDRVEALSGVRYEHRTSRAGDPHLHAHVLLANKQLCRDGKWRTLDGVGLYHEARAAGTIYQAVLREELSRTLGVEWADTVHGCAEIIGLDDRGLIEDFSTRAREIDQWAADNGVGSDAAFERMGQKKTRQVKDLDTPLSELEQNWKARVAETSAPKFVEALSPHSHSPQPVALPTVDEVLEAVTRERSTFTRADVVEAATELLPVGAVTAKEIYDTVERLADQVCGGHVAWTVTPDKDRQVDRSAREGSQRFTSEAVVEEVNRGIDLATTVTGRGVSSSMITPVEGQLSADQAEAMRAVVSSRYLASVVIAPAGAGKTSSLKAARTAWEQAGKQVIGLAPTGKAADVMVGEDVAHSSSTLARVLRGVEDQEVEQAVATLGWTTDHVIVVDEAGMVSTPEMVRILELAQAADARVVLVGDPYQYGAVKARGGLLATLAHEMPDAVELREVFRQHDEKERVASKRLRTGVLPDVERAADFYAGAGRLHAGSVTAMLDDALAGWREDVAAGKDSLLVASTHDYVDALNRAAQQTMIAAGVVDAAEAIAVSSGQYAHVGDTILTRRNDYELTTSSGDVVRNGQRWQVETIDGDGFVLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATVDVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGDSETGHGVVTATQRRESAQYARDLLVQAATRSHSDHSPHEVHRQARLDWGLSRLSSNVPTSESPFRGTRMAQVADQRAAQRLERVQEFYATTNATVHAKQAAKEAAQQRRSRKCTDTSASTSGVDQPFSADYLSMSPEELSEVMQKQIHESAQRKKTPHEEERARLTAKIEHFEQEVSDLRAQVSELELARRDAERELSQANVRMNDLDNRIYAKEVEREQRGFLAKAFKPREGLEQIEQLMIERDQQQIYRDQCEHKVADVKADLDQARTAYQAAQDKHVDAVQELSSVNLNPLLLHDGELNLAESHHDDTAADDYDHTSGWEHSSRNDNGMDL
SIO_010081: ccrud_RS14760
subclass of: SO_0000673
so part of: ccrud_RS14760
location: complement(18705..22199)
location: region:18705-22199:-1
so has part: feature:18705-22199:-1:exon

WP_066570514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18705-22199:-1:exon

ccrud_RS14770
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14770
old locus tag: ccrud_14765
so part of: sequence
location: complement(22747..23022)
location: region:22747-23022:-1
so has part: feature:22747-23022:-1:exon
subclass of: SO_0000010

position:22747:-1
position: 22747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23022:-1
position: 23022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22747-23022:-1:exon

ccrud_RS14770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14770
old locus tag: ccrud_14765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPLDPTTNNRYIPRTPGPASDVAQSPSQEATHPTITPGQIAEWEPPAVVKLTTQITVEHRKLLHRLERQTGTSLWKLIGHAIEEMYGSKH
SIO_010081: ccrud_RS14770
subclass of: SO_0000673
so part of: ccrud_RS14770
location: complement(22747..23022)
location: region:22747-23022:-1
so has part: feature:22747-23022:-1:exon

WP_066570535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22747-23022:-1:exon

ccrud_RS14775
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14775
old locus tag: ccrud_14770
so part of: sequence
location: 23123..23368
location: region:23123-23368:1
so has part: feature:23123-23368:1:exon
subclass of: SO_0000010

position:23123:1
position: 23123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23368:1
position: 23368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23123-23368:1:exon

ccrud_RS14775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14775
old locus tag: ccrud_14770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770473.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTPDKKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLVTGLTRAPRIKP
SIO_010081: ccrud_RS14775
subclass of: SO_0000673
so part of: ccrud_RS14775
location: 23123..23368
location: region:23123-23368:1
so has part: feature:23123-23368:1:exon

WP_011091138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23123-23368:1:exon

ccrud_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 1652495
locus tag: ccrud_RS14780
old locus tag: ccrud_14775
so part of: sequence
location: complement(23754..25157)
location: region:23754-25157:-1
so has part: feature:23754-25157:-1:exon
subclass of: SO_0000010

position:23754:-1
position: 23754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25157:-1
position: 25157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23754-25157:-1:exon

ccrud_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1652495
locus tag: ccrud_RS14780
old locus tag: ccrud_14775
function: transposase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011015202.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380-like element IS1677 family transposase
translation: MQLLHNPTAMSASFDDPNLISLAGLVPTMHLADAASLSTLAQDRLSITGDKGANAGAKIASLVAGMVAGADSIDDMDVLRHGGMRRLFDRIYAPSTLGSFLRAFTFGHVRQLDAVASRFLVNLARQAPHLVPPPPAGSGGNGYVFVDVDDTIIEVHGHTKQGAGFGYSGIRGLNALLATVTTAQSAPIIVGQRLRKGSCGSPRGAHRLIADAMTTTRRLPGMEDKKILVRADSAYYGHPSVSVALRSGADVSVTVRMTPNVKKAIVAIPEDAWQTIQYTDAIFDEASQSWISLAQVAEVPFTAFTSRKKADHVPGRLVVRRIPELNKKDVYQPGLFDLHRFHAVFTTADPGVLDTVAADKTHRQHAIIEQVNADLKASALAHLPSGTFTANSAWLVCAVMAFNLTRATGVIAAGGMAKATTATIRRTLMAVPARVARRSRRLVLHLPEGWTWQPQWQKLFDHGHSPP
SIO_010081: ccrud_RS14780
subclass of: SO_0000673
so part of: ccrud_RS14780
location: complement(23754..25157)
location: region:23754-25157:-1
so has part: feature:23754-25157:-1:exon

WP_010991835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23754-25157:-1:exon